Home The crystal structure of tris((Z)-2-hydroxy-N-((E)-pyridin-2-ylmethylene)benzohydrazonato-k2O,N)europium(III), C39H30N9O6Eu
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The crystal structure of tris((Z)-2-hydroxy-N-((E)-pyridin-2-ylmethylene)benzohydrazonato-k2O,N)europium(III), C39H30N9O6Eu

  • Zhongyuan Zhou , Yong Liu EMAIL logo , Yongsheng Niu and Liguo Yang ORCID logo
Published/Copyright: February 29, 2024

Abstract

C39H30N9O6Eu, monoclinic, C2/c (no. 15), a = 31.579(6) Å, b = 10.0462(19) Å, c = 27.325(5) Å, β = 121.891(2)°, V = 7360(2) Å3, Z = 8, R gt (F) = 0.0295, wR ref (F 2) = 0.0835, T = 298 K [13].

CCDC no.: 2331016

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Yellow block
Size: 0.08 × 0.06 × 0.03 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 1.77 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 25.0°, >99 %
N(hkl)measured, N(hkl)unique, R int: 32,240, 6492, 0.026
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 5580
N(param)refined: 499
Programs: Bruker [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
Eu1 0.39327 (2) 0.49033 (2) 0.56163 (2) 0.03497 (8)
N1 0.40014 (12) 0.3681 (3) 0.65119 (13) 0.0438 (7)
O1 0.54269 (11) 0.8732 (3) 0.72758 (13) 0.0610 (8)
H1 0.5136 0.8483 0.7110 0.091*
C1 0.56956 (15) 0.7872 (4) 0.71603 (16) 0.0467 (9)
O2 0.47938 (9) 0.5301 (2) 0.62564 (11) 0.0458 (6)
N2 0.33380 (11) 0.2954 (3) 0.54144 (12) 0.0418 (7)
C2 0.54881 (13) 0.6724 (4) 0.68225 (15) 0.0416 (8)
O3 0.39227 (14) 0.7236 (3) 0.36494 (13) 0.0697 (9)
H3 0.4024 0.6612 0.3877 0.105*
N3 0.29991 (12) 0.2558 (3) 0.48504 (13) 0.0476 (8)
C3 0.57982 (15) 0.5901 (4) 0.67362 (18) 0.0519 (10)
H3A 0.5663 0.5147 0.6507 0.062*
C4 0.62984 (17) 0.6170 (5) 0.6980 (2) 0.0652 (12)
H4 0.6500 0.5600 0.6921 0.078*
O4 0.38754 (9) 0.6914 (2) 0.51460 (10) 0.0433 (6)
N4 0.42659 (11) 0.4901 (3) 0.49536 (13) 0.0387 (7)
C5 0.62006 (17) 0.8138 (5) 0.73999 (18) 0.0625 (12)
H5 0.6340 0.8898 0.7623 0.075*
N5 0.41722 (11) 0.6002 (3) 0.46069 (13) 0.0424 (7)
O5 0.2888 (2) 0.5126 (4) 0.3591 (2) 0.1155 (16)
H5A 0.3113 0.5116 0.3932 0.173*
O6 0.32584 (10) 0.4514 (3) 0.46456 (11) 0.0480 (6)
N6 0.44156 (12) 0.2743 (3) 0.56139 (14) 0.0454 (7)
C6 0.49540 (13) 0.6375 (4) 0.65492 (15) 0.0412 (8)
N7 0.46700 (11) 0.7221 (3) 0.66306 (13) 0.0427 (7)
C7 0.38576 (15) 0.7530 (4) 0.63551 (16) 0.0487 (9)
H7 0.3956 0.8298 0.6578 0.058*
C8 0.33333 (15) 0.7128 (4) 0.60249 (16) 0.0473 (9)
N8 0.41772 (11) 0.6805 (3) 0.63308 (12) 0.0398 (7)
C9 0.29697 (17) 0.7828 (5) 0.6058 (2) 0.0654 (12)
H9 0.3056 0.8578 0.6291 0.079*
N9 0.32233 (11) 0.6044 (3) 0.56873 (13) 0.0434 (7)
C11 0.23663 (17) 0.6304 (5) 0.5400 (2) 0.0678 (13)
H11 0.2040 0.5997 0.5181 0.081*
C10 0.24820 (18) 0.7406 (6) 0.5745 (2) 0.0732 (14)
H10 0.2235 0.7859 0.5766 0.088*
C13 0.26941 (14) 0.3123 (4) 0.38617 (16) 0.0521 (9)
C12 0.27470 (15) 0.5661 (5) 0.53864 (19) 0.0566 (10)
H12 0.2666 0.4914 0.5152 0.068*
C14 0.24483 (18) 0.1868 (5) 0.3677 (2) 0.0688 (11)
H14 0.2458 0.1259 0.3939 0.083*
C15 0.2191 (2) 0.1585 (7) 0.3085 (2) 0.0942 (19)
H15 0.2037 0.0761 0.2956 0.113*
C16 0.2161 (2) 0.2475 (8) 0.2696 (2) 0.099 (2)
H16 0.1981 0.2258 0.2306 0.119*
C17 0.2391 (2) 0.3691 (7) 0.2867 (2) 0.0909 (18)
H17 0.2367 0.4299 0.2597 0.109*
C019 0.64944 (17) 0.7297 (6) 0.7311 (2) 0.0692 (13)
H019 0.6831 0.7489 0.7477 0.083*
C19 0.30027 (13) 0.3436 (4) 0.44867 (16) 0.0443 (9)
C18 0.26616 (16) 0.3998 (5) 0.34543 (18) 0.0632 (10)
C20 0.33473 (15) 0.2267 (4) 0.58118 (17) 0.0521 (10)
H20 0.3130 0.1555 0.5720 0.063*
C21 0.37053 (15) 0.2614 (4) 0.64150 (16) 0.0477 (9)
C22 0.37451 (19) 0.1859 (5) 0.68650 (19) 0.0715 (14)
H22 0.3540 0.1123 0.6789 0.086*
C23 0.4094 (2) 0.2220 (5) 0.7428 (2) 0.0745 (14)
H23 0.4127 0.1727 0.7735 0.089*
C24 0.43875 (18) 0.3299 (5) 0.75280 (18) 0.0614 (11)
H24 0.4624 0.3559 0.7903 0.074*
C25 0.43276 (15) 0.4011 (4) 0.70584 (16) 0.0512 (10)
H25 0.4526 0.4758 0.7130 0.061*
C26 0.45262 (18) 0.1691 (4) 0.59619 (19) 0.0632 (12)
H26 0.4394 0.1655 0.6195 0.076*
C27 0.4826 (2) 0.0658 (5) 0.5993 (2) 0.0730 (14)
H27 0.4891 −0.0057 0.6239 0.088*
C28 0.50265 (18) 0.0702 (4) 0.5653 (2) 0.0706 (14)
H28 0.5234 0.0023 0.5669 0.085*
C29 0.49164 (16) 0.1764 (4) 0.5290 (2) 0.0608 (12)
H29 0.5045 0.1806 0.5053 0.073*
C30 0.46135 (14) 0.2770 (4) 0.52788 (17) 0.0453 (9)
C31 0.45017 (14) 0.3929 (4) 0.49110 (18) 0.0467 (9)
H31 0.4602 0.3957 0.4647 0.056*
C32 0.39692 (13) 0.6972 (3) 0.47470 (15) 0.0376 (8)
C33 0.38516 (13) 0.8221 (4) 0.44100 (15) 0.0390 (8)
C34 0.37659 (14) 0.9375 (4) 0.46278 (17) 0.0450 (9)
H34 0.3787 0.9343 0.4980 0.054*
C35 0.36507 (16) 1.0558 (4) 0.4332 (2) 0.0580 (11)
H35 0.3599 1.1322 0.4486 0.070*
C36 0.36125 (18) 1.0608 (5) 0.3807 (2) 0.0674 (13)
H36 0.3530 1.1406 0.3605 0.081*
C37 0.36943 (19) 0.9489 (5) 0.3580 (2) 0.0662 (12)
H37 0.3662 0.9532 0.3222 0.079*
C38 0.38254 (16) 0.8288 (4) 0.38828 (17) 0.0511 (10)

1 Source of material

The ligand was synthesized from the reaction of benzoyl hydrazine (100 mg, 0.60 mmol) and benzoate (50 mg, 0.60 mmol) according to the procedure reported earlier [4]. Yield (0.008 g, 60 %).

2 Experimental details

The C-bound H atoms were geometrically placed (C–H = 0.95–0.98 Å) and refined as riding with U iso(H) = 1.2–1.5 U eq(C). The N-bound H atoms were located in a difference Fourier map but were refined with a distance restraint of N–H = 0.88 ± 0.01 Å, and with U iso(H) set to 1.2 U equiv(N) [13].

3 Comment

Over the years, extensive research has been conducted on Schiff base metal complexes due to the synthetic flexibility of these Schiff base ligands and their selectivity and sensitivity towards transition metal ions. The beautiful structures of these coordination compounds stem from the intriguing ligand systems with different donor sites, such as the heterocyclic rings in NNO or NNS. Within these ligand systems, hydrazones and thiosemicarbazones occupy a special position because the transition metal complexes of these ligands have been developed for their chelating ability, structural flexibility, interesting electronic and magnetic properties, as well as pharmacological activities. They have also been proposed as excellent acid–base indicators and storage sensors due to their color-enhancing properties upon deprotonating. Some thiosemicarbazone complexes exhibit significant activity against Gram-positive bacteria in vitro. These thiosemicarbanone chelating derivatives hold great potential as oral drugs for treating genetic diseases such as thalassemia and are more effective than metal-free chelators, leading to the conclusion that metal complexes are biologically active species [47].

The title compound 1 crystallizes in the monoclinic space group C2/c with eight formula units in the unit cell. Complex 1 is composed of one Eu atom, three Schiff base ligands. It is the first mononuclear Eu complex with N′-[(2-pyridyl)methylene]salicyloylhydrazone Schiff base ligand. N′-[(2-pyridyl)methylene]salicyloylhydrazone is a tridentate ligand with enolic–O, azo–N and pyridine–N donor sites. The nine-coordinated Eu bind to three O atoms and six N atoms. The average bond length for the three Eu–O bonds is 2.371 Å, the average bond length for the six Eu–N bonds is 2.591 Å, which are similar to the corresponding values of the references [810].


Corresponding author: Yong Liu, School of Energy Science and Technology, Henan University, Zhengzhou 450000, P.R. China, E-mail:

Funding source: Postdoctoral Research Funding Project of Henan Province

Award Identifier / Grant number: (HN2022160)

Funding source: Postdoctoral Research Starting Foundation of Anyang Institute of Technology

Award Identifier / Grant number: (BHJ2022006)

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Postdoctoral Research Funding Project of Henan Province (HN2022160), and the Postdoctoral Research Starting Foundation of Anyang Institute of Technology (BHJ2022006).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2023-11-22
Accepted: 2024-02-05
Published Online: 2024-02-29
Published in Print: 2024-06-25

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  68. Crystal structure of dimethyl (R)-2-(3-(1-phenylethyl)thioureido)-[1,1′-biphenyl]-4,4′-dicarboxylate, C25H24N2O4S
  69. The crystal structure of 1-(3-carboxypropyl)-1H-imidazole-3-oxide, C7H10N2O3
  70. Synthesis and crystal structure of dimethyl 4,4′-(propane-1,3-diylbis(oxy))dibenzoate, C19H20O6
  71. Crystal structure of methyl-1-(p-tolyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxylate, C20H20N2O2
  72. The crystal structure of 1-(1-adamantan-1-yl)ethyl-3-(3-methoxyphenyl)thiourea, C20H28N2OS
  73. The crystal structure of N,N′-carbonylbis(2,6-difluorobenzamide), C15H8F4N2O3
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