Home The crystal structure of 1-(1-adamantan-1-yl)ethyl-3-(3-methoxyphenyl)thiourea, C20H28N2OS
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The crystal structure of 1-(1-adamantan-1-yl)ethyl-3-(3-methoxyphenyl)thiourea, C20H28N2OS

  • Shahnez Chaouch , Mohamed El-Naggar , Ihsan A. Shehadi , Monther A. Khanfar ORCID logo and Raed A. Al-Qawasmeh EMAIL logo
Published/Copyright: April 15, 2024

Abstract

C20H28N2OS, triclinic, P1̄ (no. 2), a = 6.7356(10) Å, b = 10.8739(15) Å, c = 13.245(2) Å, α = 75.580(7)°, β = 78.612(7)°, γ = 87.564(7)°, V = 921.0(2) Å3, Z = 2, R gt(F) = 0.0796, wR ref(F 2) = 0.2666, T = 100(2) K.

CCDC no.: 2343337

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless needle
Size: 0.51 × 0.08 × 0.05 mm
Wavelength: MoKα radiation (0.71073 Å)
μ: 0.19 mm−1
Diffractometer, scan mode: Bruker Apex-II, φ and ω
θ max, completeness: 25.7°, >99 %
N(hkl)measured, N(hkl)unique, R int: 24,903, 3501, 0.088
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 2568
N(param)refined: 225
Programs: Bruker [1], Olex2 [2], Shelx [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
C1 0.6504 (6) 0.7110 (3) 0.1087 (3) 0.0295 (8)
C2 0.4749 (6) 0.7794 (3) 0.1273 (3) 0.0300 (8)
H2A 0.3475 0.7427 0.1308 0.036*
C3 0.4841 (6) 0.9018 (3) 0.1409 (3) 0.0313 (8)
C4 0.6702 (6) 0.9549 (4) 0.1376 (3) 0.0375 (9)
H4 0.6780 1.0384 0.1466 0.045*
C5 0.8436 (6) 0.8840 (4) 0.1209 (4) 0.0416 (10)
H5 0.9705 0.9190 0.1209 0.050*
C6 0.8373 (6) 0.7637 (4) 0.1044 (3) 0.0372 (9)
H6 0.9586 0.7179 0.0904 0.045*
C7 0.3023 (7) 1.0913 (4) 0.1615 (3) 0.0404 (9)
H7A 0.1639 1.1241 0.1664 0.061*
H7B 0.3888 1.1413 0.0972 0.061*
H7C 0.3545 1.0977 0.2241 0.061*
C8 0.7251 (5) 0.4808 (3) 0.1234 (3) 0.0277 (8)
C9 0.9518 (6) 0.3741 (3) 0.2479 (3) 0.0308 (8)
H9 0.9503 0.3052 0.2103 0.037*
C10 0.8594 (5) 0.3181 (3) 0.3673 (3) 0.0278 (8)
C11 0.6540 (6) 0.2550 (4) 0.3782 (3) 0.0349 (9)
H11A 0.5608 0.3187 0.3457 0.042*
H11B 0.6725 0.1870 0.3395 0.042*
C12 0.5605 (6) 0.1984 (4) 0.4948 (3) 0.0370 (9)
H12 0.4267 0.1586 0.4996 0.044*
C13 0.7016 (6) 0.0976 (4) 0.5441 (3) 0.0388 (9)
H13A 0.7193 0.0286 0.5065 0.047*
H13B 0.6417 0.0605 0.6196 0.047*
C14 0.9068 (6) 0.1580 (4) 0.5356 (3) 0.0357 (9)
H14 0.9996 0.0918 0.5672 0.043*
C15 0.8783 (6) 0.2623 (4) 0.5960 (3) 0.0366 (9)
H15A 1.0109 0.3014 0.5915 0.044*
H15B 0.8202 0.2256 0.6719 0.044*
C16 0.7355 (6) 0.3634 (3) 0.5472 (3) 0.0351 (9)
H16 0.7163 0.4318 0.5866 0.042*
C17 0.8269 (6) 0.4210 (3) 0.4302 (3) 0.0317 (8)
H17A 0.9582 0.4622 0.4249 0.038*
H17B 0.7351 0.4869 0.3992 0.038*
C18 1.0001 (6) 0.2162 (4) 0.4180 (3) 0.0335 (8)
H18A 1.1333 0.2548 0.4130 0.040*
H18B 1.0217 0.1486 0.3790 0.040*
C19 0.5301 (6) 0.3027 (4) 0.5552 (3) 0.0364 (9)
H19A 0.4691 0.2660 0.6307 0.044*
H19B 0.4371 0.3679 0.5245 0.044*
C20 1.1679 (6) 0.4231 (4) 0.2244 (3) 0.0416 (10)
H20A 1.2577 0.3529 0.2475 0.062*
H20B 1.1754 0.4887 0.2626 0.062*
H20C 1.2099 0.4594 0.1479 0.062*
N1 0.6358 (5) 0.5907 (3) 0.0843 (2) 0.0308 (7)
H1 0.543 (7) 0.591 (4) 0.048 (4) 0.046*
N2 0.8261 (5) 0.4770 (3) 0.2016 (2) 0.0310 (7)
H2 0.829 (7) 0.550 (5) 0.218 (4) 0.046*
O1 0.3020 (4) 0.9610 (2) 0.1570 (2) 0.0385 (7)
S1 0.70211 (15) 0.35278 (9) 0.07474 (7) 0.0347 (4)

1 Source of materials

All chemicals and solvents were used as purchased without further purifications. The uncorrected melting point was determined using an electrothermal digital melting-point apparatus. The NMR spectra were recorded at room temperature in DMSO-d6 solution on a Bruker Avance 500 MHz NMR spectrometer. The title compound was prepared as follows: while stirring a solution of 1-(adamantan-1-yl)ethanamine hydrochloride (0.1 g, 0.55 mmol, 1.0 eq) in dichloromethane (DCM) (1.5 mL), Et3N (0.23 mL, 1.65 mmol, 3.0 eq) was added and followed with phenyl isothiocyanate (0.070 mL, 0.58 mmol, 1.05 eq) in DCM (1.0 mL) at 0 °C. After 14 h at room temperature, the reaction solution was diluted with H2O (3 mL) and DCM (5 mL). The organic layer was separated and concentrated to give crude residue which was then triturated with DCM/Pentane mixture (1:10, 20 mL) to afford the title compound, 1-(1-(adamantan-1-yl)ethyl)-3-(3-methoxyphenyl)thiourea as white color solid with 83 % yield (143 mg, 0.45 mmol). The obtained compound was recrystallized from methanol. Melting point: 152–154 °C. 1 H-NMR (500 MHz, DMSO-d6): δ 1.00 (d, 3H, J = 7.0 Hz), 1.50–1.53 (6H, m, adamantane-H), 1.60–1.69 (6H, m, adamantane-H), 1.97 (3H, bs, adamantane-H), 3.73 (3H, s, OCH3), 4.19 (1H, bt, J = 7.0 Hz), 6.64 (1H, dd, J = 2.0, 8.0 Hz), 7.01 (1H, dd, J = 1.0, 8.0 Hz), 7.19 (1H, bdd, J = 8.0, 8.5 Hz), 7.34 (1H, bs, NH), 7.42 (1H, bd, J = 9.5 Hz), 9.442 (1H, s, NH). 13 C-NMR (125 MHz, DMSO-d6); δ 13.8, 27.82, 36.66, 38.23, 55.09, 57.31, 107.87, 109.17, 114.36, 129.26, 140.98, 153.1, 180.02.

2 Experimental details

Single crystal of C20H28N2OS was obtained through crystallization of the pure compound from slow evaporation of methanol. The collected frames were integrated with the Bruker SAINT software package using a narrow-frame algorithm. Data correction was performed for absorption effects using the multi-scan method (SADABS). The structure was solved and refined using the Bruker Shelx [3] software package. Using Olex2 [2], the structure was further refined with the ShelXL [4] refinement package. All H atoms bonded to C atoms were refined as riding, with C–H distances of 0.93 Å (for aromatic ring).

3 Comment

The discovery of the adamantine and rimantadine (the superior one) as the first adamantane-based antiviral drugs [5, 6], has sparked the research and development of diverse entities that contain adamantane moiety. The adamantane nucleus has been proven to be lipophilic bullet in many approved drugs [7]. Adamantane containing compounds are still rising in the medicinal chemistry area with wide biological indications [8], [9], [10], [11], [12]. Thiourea derivatives, on the other hand, are well known for their biological activities in different areas of medicinal chemistry. The thiourea derivative sorafenib and regorafenib are marketed as anticancer drugs [13], anti-ad activity [14], and antibiotic [15]. As an ongoing program to investigate new hybrid systems with potential bioactivity [16, 17] we are focusing on the hybridization of rimantadine with the thiourea moiety via the reaction of the commercially available rimantadine hydrochloride to generate the new hybrid system.

The crystallographic measurement shows that the crystal structure consists of the C20H28N2OS monomeric molecules. The asymmetric unit shows one molecular unit, in which all bond lengths and angles are in normal ranges [18]. The molecules maintain the trans-cis configuration [19] with respect to the position of the phenyl group relative to the thiono S1 atom across N1–C1 and N2–C9 bonds, respectively. The thiourea moiety (S1/N1/N2/C8) is essentially planar with a maximum deviation of 0.007(3) Å for atom C8 from the least square plane. It makes dihedral angle with phenyl ring of 51.762(15)°.

The molecular packing of the title compound is affected by N1–H1⋯S1 intermolecular hydrogen bond, with distance equal to 2.495 Å, to form centrosymmetric dimers along c axis. An additional C5–H5⋯O1 (−1 + x, +y, +z) intermolecular hydrogen bond is observed with distance equal to 2.457 Å.


Corresponding author: Raed A. Al-Qawasmeh, Department of Chemistry, Pure and Applied Chemistry Group, College of Sciences, University of Sharjah, Sharjah, 27272, UAE; and Department of Chemistry, The University of Jordan, Amman, 11942, Jordan, E-mail:

Funding source: University of Sharjah

Award Identifier / Grant number: 23021440137

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This research work was funded by University of Sharjah, for financial support (grant No. 23021440137). Part of this work has been carried out during sabbatical leave granted to MAK from the University of Jordan during the academic year 2021–2022.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2024-03-04
Accepted: 2024-03-27
Published Online: 2024-04-15
Published in Print: 2024-06-25

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  50. The crystal structure of (2-diphenylphosphanylphenyl) 2-[7-(dimethylamino)-2-oxochromen-4-yl]acetate, C31H26NO4P
  51. Crystal structure of (E)-6-(4-ethylpiperazin-1-yl)-2-(3-fluorobenzylidene)-3,4-dihydronaphthalen-1(2H)-one, C23H25FN2O
  52. The structure of RUB-56, (C6H16N)8 [Si32O64(OH)8]·32 H2O, a hydrous layer silicate (2D-zeolite) that contains microporous levyne-type silicate layers
  53. Crystal structure of 4-amino-3,5-dibromobenzonitrile, C7H4Br2N2
  54. Crystal structure of 2-(naphthalen-1-yl)ethyl 2-acetoxybenzoate, C21H18O4
  55. Single-crystal structure determination of Tm3B12O19(OH)7
  56. Crystal structure determination of NdB3.6O7
  57. The crystal structure of NdB6O8(OH)5·H3BO3
  58. Crystal structure of 2-(5-ethylpyridin-2-yl)ethyl 2-(6-methoxynaphthalen-2-yl)propanoate, C23H25NO3
  59. Crystal structure of N-(1-(3,4-dimethoxyphenyl)-2-methylpropyl)aniline, C18H23NO2
  60. Crystal structure of Ba6Cd12Mn4SiF48
  61. Synthesis and crystal structure of 5-fluoro-1-methyl-2-oxo-3-(2-oxochroman-4-yl)indolin-3-yl acetate, C20H16FNO5
  62. The crystal structure of 6-methacryloylbenzo[d][1,3]dioxol-5-yl 4-nitrobenzenesulfonate, C17H13NO8S
  63. Crystal structure of ethyl 2-(3-benzyl-4-oxo-3,4-dihydrophthalazin-1-yl)- 2,2-difluoroacetate, C19H16F2N2O3
  64. The crystal structure of tetrakis(μ 2-(1H-benzimidazole-2-methoxo-κ2 N,O:O:O)-(n-butanol-κO)-chlorido)-tetranickel(II), C48H68Cl4N8O8Ni4
  65. Synthesis and crystal structure of trans-tetraaqua-bis((1-((7-hydroxy-3-(4-methoxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)piperidin-1-ium-4-carbonyl)oxy-κO)zinc(II)hexahydrate, C46H64N2O28S2Zn
  66. The crystal structure of 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium hexafluoridophosphate, C9H15F6N2O2P
  67. Crystal structure of 1-(4-chlorophenyl)-4-(2-furoyl)-3-phenyl-1H-pyrazol-5-ol, C20H13ClN2O3
  68. Crystal structure of dimethyl (R)-2-(3-(1-phenylethyl)thioureido)-[1,1′-biphenyl]-4,4′-dicarboxylate, C25H24N2O4S
  69. The crystal structure of 1-(3-carboxypropyl)-1H-imidazole-3-oxide, C7H10N2O3
  70. Synthesis and crystal structure of dimethyl 4,4′-(propane-1,3-diylbis(oxy))dibenzoate, C19H20O6
  71. Crystal structure of methyl-1-(p-tolyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxylate, C20H20N2O2
  72. The crystal structure of 1-(1-adamantan-1-yl)ethyl-3-(3-methoxyphenyl)thiourea, C20H28N2OS
  73. The crystal structure of N,N′-carbonylbis(2,6-difluorobenzamide), C15H8F4N2O3
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