Startseite The crystal structure of 1-(2-chlorobenzyl)-3-(3-chlorophenyl)urea, C14H12Cl2N2O
Artikel Open Access

The crystal structure of 1-(2-chlorobenzyl)-3-(3-chlorophenyl)urea, C14H12Cl2N2O

  • Xiaohua Li , Yang Yang , Xiaolin Dang und Wenqiang Tang ORCID logo EMAIL logo
Veröffentlicht/Copyright: 12. März 2024

Abstract

C14H12Cl2N2O, orthorhombic, P212121 (no. 19), a = 8.5344(8) Å, b = 12.0204(16) Å, c = 13.4504(13) Å, V = 1379.8(3) Å3, Z = 4, R gt (F) = 0.0896, wR ref (F 2) = 0.2327, T = 293 K.

CCDC no.: 2334472

The crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.32 × 0.28 × 0.23 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.46 mm−1
Diffractometer, scan mode: SuperNova, ω-scans
θ max, completeness: 59,1°, >99 %
N(hkl)measured, N(hkl)unique, R int: 4412, 2897, 0.025
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 1867
N(param)refined: 160
Programs: Bruker programs [1], SHELX [23], OLEX2 [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

x y z U iso*/U eq
Cl1 0.5601 (4) 0.1198 (3) 0.06867 (17) 0.1034 (11)
Cl2 0.5454 (4) 0.3444 (2) 0.90046 (16) 0.0951 (10)
O1 0.6653 (4) 0.1909 (4) 0.5500 (3) 0.0427 (12)
N1 0.4689 (6) 0.1929 (5) 0.4347 (4) 0.0491 (15)
H1 0.377822 0.219441 0.420862 0.059*
N2 0.4406 (6) 0.2844 (5) 0.5819 (4) 0.0458 (15)
H2 0.358413 0.314890 0.556823 0.055*
C1 0.5867 (9) 0.0860 (8) 0.1919 (6) 0.059 (2)
C2 0.6776 (10) −0.0048 (8) 0.2149 (7) 0.065 (2)
H2A 0.724007 −0.046979 0.164969 0.078*
C3 0.6985 (9) −0.0320 (8) 0.3135 (7) 0.062 (2)
H3 0.758671 −0.093626 0.330606 0.074*
C4 0.6286 (8) 0.0333 (6) 0.3887 (6) 0.0522 (19)
H4 0.641768 0.014547 0.455218 0.063*
C5 0.5414 (7) 0.1245 (6) 0.3629 (5) 0.0414 (16)
C6 0.5191 (8) 0.1516 (6) 0.2631 (5) 0.0484 (18)
H6 0.459370 0.213181 0.245255 0.058*
C7 0.5325 (7) 0.2200 (5) 0.5241 (5) 0.0384 (15)
C8 0.4786 (7) 0.3030 (6) 0.6863 (5) 0.0434 (16)
H8A 0.533783 0.238157 0.711024 0.052*
H8B 0.381360 0.309073 0.723252 0.052*
C9 0.5760 (5) 0.4040 (3) 0.7076 (3) 0.0416 (16)
C10 0.6318 (6) 0.4733 (4) 0.6329 (3) 0.058 (2)
H10 0.607474 0.458546 0.566837 0.069*
C11 0.7240 (6) 0.5647 (4) 0.6570 (5) 0.083 (3)
H11 0.761392 0.611153 0.607000 0.099*
C12 0.7604 (5) 0.5868 (4) 0.7558 (6) 0.090 (4)
H12 0.822119 0.647999 0.771870 0.108*
C13 0.7046 (6) 0.5175 (5) 0.8305 (4) 0.080 (3)
H13 0.728931 0.532239 0.896578 0.096*
C14 0.6124 (6) 0.4260 (4) 0.8064 (3) 0.056 (2)

1 Source of materials

3-Chlorophenyl isocyanate (0.15 g, 1 mmol) and 2-chlorobenzylamine (0.14 g, 1 mmol) were mixed in a 25 mL glass bottle. Subsequently, 15 mL of dichloromethane was added, and the resulting solution was stirred at room temperature for 10 min. Stirring was continued for an additional 5 h to ensure complete reaction at 50 °C. The solvent was then evaporated using a rotary evaporator to obtain the crude product. The crude product was dissolved in a minimal amount of hot ethanol under controlled heating and gradually cooled to room temperature. During the cooling process, the formation of a single crystal of the desired compound was observed.

2 Experimental details

The crystal structure was determined using SHELXT [2] and refined using SHELXL [3] with anisotropic refinement for non-hydrogen atoms and isotropic refinement for hydrogen atoms. The resulting crystal structure was visualized using the OLEX2 software package [4].

3 Comment

Urea and its derivatives play a crucial role in drug development and medicinal chemistry, owing to their capacity to form multiple stable hydrogen bonds with proteins and receptor targets [5]. This urea functionality acts as a core feature that facilitates effective interactions with biomolecules, enabling the design and synthesis of novel drug candidates. Despite the multitude of reported crystal structures of similar urea derivatives [6], [7], [8], the development of innovative structures continues to play a pivotal role in drug discovery. This article presents a novel structure of a urea derivative, aiming to contribute to the advancement of pharmaceutical research.

The crystal structure of the titled compound shows that the Cl atom and C atom in the chlorobenzene group are almost coplanar. The two benzene rings exhibit significant twists relative to the urea group, with dihedral angles of 83.6° and 38.5°, respectively. The dihedral angle between the two benzene rings is 69.6°. All bond lengths, bond angles, and dihedral angles in the molecule fall within reasonable ranges and are similar to those reported in the literature for crystal structures of similar compounds [9], [10], [11], [12], [13].


Corresponding author: Wenqiang Tang, Xianyang Key Laboratory of Molecular Imaging and Drug Synthesis, School of Pharmacy, Shaanxi Institute of International Trade & Commerce, Xianyang, Shaanxi, China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was financially supported by the projects of key research and development project of Shaanxi Provincial Science and Technology Department (2022SF-448), Scientific research plan project of Shaanxi Provincial Department of Education (22JK0276), the Xianyang Key Laboratory of Molecular Imaging and Drug Synthesis (2021QXNL–PT-0008), the 2023 key research and development project of the Xianyang Science and Technology Bureau (L2023–ZDYF–SF-030), the key research and development project of Shaanxi Provincial Science and Technology Department (2023-YBSF-036) and the youth innovation team of Shaanxi University 2023 – “Key technology development and application innovation team of the industrialization of traditional Chinese medicine with northwest characteristics”.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2024-01-23
Accepted: 2024-02-22
Published Online: 2024-03-12
Published in Print: 2024-06-25

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. The crystal structure of tris((Z)-2-hydroxy-N-((E)-pyridin-2-ylmethylene)benzohydrazonato-k2O,N)europium(III), C39H30N9O6Eu
  4. Crystal structure of (E)-3-(benzylideneamino)-2-phenylthiazolidin-4-one, C16H14N2OS
  5. The crystal structure of (E)-4-fluoro-N′-(1-(o-tolyl)ethylidene)benzohydrazide, C16H15FN2O
  6. Crystal structure of (6-chloropyridin-3-yl)methyl 2-(6-methoxynaphthalen-2-yl)propanoate, C20H18ClNO3
  7. Crystal structure of methyl 3-methoxy-4-(2-methoxy-2-oxoethoxy)benzoate, C12H14O6
  8. The crystal structure of bis[(4-methoxyphenyl)(picolinoyl)amido-κ2 N:N′]copper(II), C26H22CuN4O4
  9. The crystal structure of poly[di(μ2-aqua)-diaqua-bis(3-aminopyridine-4-carboxylate-κ2 O: O′)-tetra(μ2-3-aminopyridine-4-carboxylate-κ2 O: O′)-dineodymium(III), [Nd2(C6H5N2O2)6(H2O)4] n
  10. The crystal structure of t-butyl 7-[3-(4-fluorophenyl)-1-(propan-2-yl)-1H-indol-2-yl]-3,5-dihydroxyhept-6-enoate, C28H34FNO4
  11. Crystal structure of catena-poly[(benzylamine-κ1 N)-(sorbato-κ1 O)-(μ2-sorbato-κ2 O,O′)-copper(II), C19H23CuNO4
  12. Crystal structure of (4-(2-chlorophenyl)-1H-pyrrol-3-yl)(ferrocenyl) methanone, C21H16ClFeNO
  13. The crystal structure of N-[4-(4-bromophenyl)-1,3-thiazol-2-yl]-3-(2-methylphenyl)-2-sulfanylprop-2-enamide hydrate, C19H17BrN2O2S2
  14. The crystal structure of N′-{5-[2-(2,6-dimethylphenoxy) acetamido]-4-hydroxy-1,6-diphenylhexan-2-yl}-3-methyl-2-(2-oxo-1,3-diazinan-1-yl)butanamide hydrate
  15. Crystal structure of 2-(naphthalen-1-yl)ethyl 2-(6-methoxynaphthalen-2-yl)propanoate, C26H24O3
  16. Crystal structure of naphthalen-1-ylmethyl 2-(6-methoxynaphthalen-2-yl)propanoate, C25H22O3
  17. Crystal structure of poly[diaqua- (μ4-5-(1H-1,2,4-triazol-1-yl)benzene-1,3-dicarboxylato-κ5N:O,O’:O’’:O’’’)calcium(II), C10H9CaN3O6
  18. Crystal structure of (E)-N′-(4-((E)-3-(dimethylamino)acryloyl)-3-hydroxyphenyl)-N, N-dimethylformimidamide, C14H19N3O2
  19. Crystal structure of (E)-3-(dimethylamino)-1-(2-hydroxy-4,6-dimethoxyphenyl)prop-2-en-1-one, C13H17NO4
  20. Crystal structure of (2-chloropyridin-3-yl)methyl-2-(6-methoxynaphthalen-2-yl)propanoate, C20H18ClNO3
  21. The crystal structure of diethyl 4-(3,4-dimethylphenyl)-2,6-dimethyl-1,4-dihydropyridine-3,5-dicarboxylate, C21H27NO4
  22. Crystal structure of (8R,9S,10R,13S,14S,17S)-17-hydroxy-10,13-dimethyl-17-((4-(2-phenylpropyl)phenyl)ethynyl)-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one, C36H42O2
  23. Synthesis and crystal structure of 4-(4-cyclopropylnaphthalen-1-yl)-2,4-dihydro-3H-1,2,4-triazole-3-thione, C15H13N3S
  24. Crystal structure of catena-poly[aqua-(2,6-di-(2-pyridyl)-pyridine-κ3 N,N′, N″)(μ2-1,4-naphthalene dicarboxylato-κ2 O,O′)nickel(II)], C27H19NiN3O5
  25. Crystal structure of 3-(diphenylphosphoryl)-3-hydroxy-1-phenylpropan-1-one, C21H19O3P
  26. The crystal structure of R,S-{N-[(2-oxidonaphthalen-1-yl)methylidene]phenylglycinato}divinylsilicon, C23H19NO3Si
  27. The crystal structure of 1,2,4-tris(bromomethyl)benzene, C9H9Br3
  28. Crystal structure of chlorido-[4-(pyridin-2-yl)benzaldehyde-κ2 N,C]-(diethylamine-κ1 N)platinum(II), C16H18ClN2OPt
  29. Crystal structure of 3-(methoxycarbonyl)-1-(4-methoxyphenyl)-2,3,4,9- tetrahydro-1H-pyrido[3,4-b]indol-2-ium chloride hydrate, C40H48Cl2N4O9
  30. The crystal structure of 1-(2-chlorobenzyl)-3-(3-chlorophenyl)urea, C14H12Cl2N2O
  31. Hydrothermal synthesis and crystal structure of aqua-tris(4-acetamidobenzoato-κ2 O,O′)-(1,10-phenanthroline-κ2 N,N′)terbium(III) hydrate C39H36N5O11Tb
  32. The crystal structure of zwitterionic 3-aminoisonicotinic acid, C6H6N2O2
  33. The crystal structure of bis{[monoaqua-μ2-4-[(pyridine-4-carbonyl)-amino]-phthalato-κ3 N:O,O′-(2,2′-bipyridine κ2 N,N′)copper(II)]}decahydrate, C48H56N8O22Cu2
  34. Crystal structure of poly[μ10-4,4′-methylene-bis(oxy)benzoatodipotassium], C15H10K2O6
  35. The crystal structure of catena-poly[[tetraaqua[(μ2-1,4-di(4-methyl-1-imidazolyl)benzene] cobalt(II)]bis(formate)], C16H24CoN4O8
  36. The crystal structure of (E)-2-chloro-5-((2-(nitromethylene)imidazolidin-1-yl)methyl)pyridine, C10H11ClN4O2
  37. The crystal structure of (E)-1-(((2-amino-4,5-dimethylphenyl)iminio)methyl)naphthalen-2-olate, C19H18N2O
  38. Crystal structure of N-(acridin-9-yl)-2-(4-methylpiperidin-1-yl) acetamide monohydrate, C21H25N3O2
  39. The crystal structure of dichlorido-bis(3-methyl-3-imidazolium-1-ylpropionato-κ2 O,O′)-zinc(II), C14H20Cl2N4O4Zn
  40. The crystal structure of 2,8-diethyl-1,3,7,9-tetramethyl-4λ4,5λ4-spiro[dipyrrolo[1,2-c:2′,1′-f][1,3,2]diazaborinine-5,2′-naphtho[1,8-de][1,3,2]dioxaborinine], C25H29BN2O2
  41. The crystal structure of 5-tert-butyl-2-(5-tert-butyl-3-iodo-benzofuran-2-yl)-3-iodobenzofuran, C24H24I2O2
  42. Synthesis and crystal structure of methyl 2-{[4-(4-cyclopropyl-1-naphthyl)-4H-1,2,4-triazole-3-yl]thio} acetate, C18H17N3O2S
  43. The crystal structure of n-propylammonium bis(2,3-dimethylbutane-2,3-diolato)borate-boric acid (1/1), [C3H10N][C12H24BO4]·B(OH)3
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  50. The crystal structure of (2-diphenylphosphanylphenyl) 2-[7-(dimethylamino)-2-oxochromen-4-yl]acetate, C31H26NO4P
  51. Crystal structure of (E)-6-(4-ethylpiperazin-1-yl)-2-(3-fluorobenzylidene)-3,4-dihydronaphthalen-1(2H)-one, C23H25FN2O
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  54. Crystal structure of 2-(naphthalen-1-yl)ethyl 2-acetoxybenzoate, C21H18O4
  55. Single-crystal structure determination of Tm3B12O19(OH)7
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  58. Crystal structure of 2-(5-ethylpyridin-2-yl)ethyl 2-(6-methoxynaphthalen-2-yl)propanoate, C23H25NO3
  59. Crystal structure of N-(1-(3,4-dimethoxyphenyl)-2-methylpropyl)aniline, C18H23NO2
  60. Crystal structure of Ba6Cd12Mn4SiF48
  61. Synthesis and crystal structure of 5-fluoro-1-methyl-2-oxo-3-(2-oxochroman-4-yl)indolin-3-yl acetate, C20H16FNO5
  62. The crystal structure of 6-methacryloylbenzo[d][1,3]dioxol-5-yl 4-nitrobenzenesulfonate, C17H13NO8S
  63. Crystal structure of ethyl 2-(3-benzyl-4-oxo-3,4-dihydrophthalazin-1-yl)- 2,2-difluoroacetate, C19H16F2N2O3
  64. The crystal structure of tetrakis(μ 2-(1H-benzimidazole-2-methoxo-κ2 N,O:O:O)-(n-butanol-κO)-chlorido)-tetranickel(II), C48H68Cl4N8O8Ni4
  65. Synthesis and crystal structure of trans-tetraaqua-bis((1-((7-hydroxy-3-(4-methoxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)piperidin-1-ium-4-carbonyl)oxy-κO)zinc(II)hexahydrate, C46H64N2O28S2Zn
  66. The crystal structure of 1-(4-carboxybutyl)-3-methyl-1H-imidazol-3-ium hexafluoridophosphate, C9H15F6N2O2P
  67. Crystal structure of 1-(4-chlorophenyl)-4-(2-furoyl)-3-phenyl-1H-pyrazol-5-ol, C20H13ClN2O3
  68. Crystal structure of dimethyl (R)-2-(3-(1-phenylethyl)thioureido)-[1,1′-biphenyl]-4,4′-dicarboxylate, C25H24N2O4S
  69. The crystal structure of 1-(3-carboxypropyl)-1H-imidazole-3-oxide, C7H10N2O3
  70. Synthesis and crystal structure of dimethyl 4,4′-(propane-1,3-diylbis(oxy))dibenzoate, C19H20O6
  71. Crystal structure of methyl-1-(p-tolyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxylate, C20H20N2O2
  72. The crystal structure of 1-(1-adamantan-1-yl)ethyl-3-(3-methoxyphenyl)thiourea, C20H28N2OS
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