Startseite Crystal structure of N-(2-chlorophenyl)methoxycarbothioamide, C8H8ClNOS
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Crystal structure of N-(2-chlorophenyl)methoxycarbothioamide, C8H8ClNOS

  • Chien Ing Yeo und Edward R.T. Tiekink EMAIL logo
Veröffentlicht/Copyright: 27. März 2018

Abstract

C8H8ClNOS, triclinic, P1̅ (no. 2), a = 6.7658(5) Å, b = 8.0344(10) Å, c = 9.6285(12) Å, α = 66.279(12)°, β = 72.245(9)°, γ = 87.699(8)°, V = 454.31(10) Å3, Z = 2, Rgt(F) = 0.056, wRref(F2) = 0.158, T = 100 K.

CCDC no.: 1830412

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.25 × 0.20 × 0.15 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:6.0 cm−1
Diffractometer, scan mode:SuperNova Dual, ω scans
2θmax, completeness:50.2°, >99%
N(hkl)measured, N(hkl)unique, Rint:3419, 1612, 0.044
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1412
N(param)refined:113
Programs:CrysAlisPRO [1], SHELX [2, 3], ORTEP [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cl10.74319(9)0.15138(8)0.31896(8)0.0279(3)
S10.20199(10)0.36917(9)0.67712(7)0.0257(3)
O10.0511(3)0.2195(2)0.52448(19)0.0214(5)
N10.3755(3)0.3487(3)0.3994(2)0.0206(5)
H1N0.482(3)0.408(3)0.399(3)0.025*
C10.2063(4)0.3101(3)0.5286(3)0.0187(6)
C20.3925(4)0.3038(3)0.2674(3)0.0190(6)
C30.5623(4)0.2137(3)0.2164(3)0.0204(6)
C40.5892(4)0.1769(3)0.0841(3)0.0243(6)
H40.70590.11720.04970.029*
C50.4467(4)0.2268(3)0.0020(3)0.0248(6)
H50.46440.2010−0.08890.030*
C60.2763(4)0.3155(3)0.0527(3)0.0252(6)
H60.17690.3488−0.00300.030*
C70.2518(4)0.3548(3)0.1830(3)0.0222(6)
H70.13700.41760.21530.027*
C8−0.1426(4)0.1699(4)0.6562(3)0.0270(6)
H8A−0.24180.10170.63810.040*
H8B−0.20120.28080.66330.040*
H8C−0.11550.09380.75630.040*

Source of materials

2-Chlorophenyl isothiocyanate (Sigma Aldrich; 2.5 mmol, 0.33 mL) was added to NaOH (Merck; 2.5 mmol, 0.10 g) in MeOH (Merck; 3 mL) and the mixture was stirred at room temperature for 2 h. This was followed by the addition of excess 5 M HCl solution. The resulting mixture was stirred for another 1.5 h. The final product was extracted with chloroform (Merck; 15 mL) and left for evaporation at room temperature, yielding colourless crystals after 2 weeks. M.p.: 343 K. Elem. Anal. Calc. for C8H8ClNOS: C, 47.64; H, 4.00; N, 6.95%. Found: C, 47.44; H, 3.67; N, 6.96%. IR (cm−1): 3223 (s) ν(N—H); 1440 (s) ν(C—N); 1213 (s) ν(C=S); 1055 (s) ν(C—O).

Experimental details

The C-bound H atoms were geometrically placed (C—H = 0.95–0.98 Å) and refined as riding with Uiso(H) = 1.2–1.5 Ueq(C). The N-bound H-atom was located in a difference Fourier map but was refined with a distance restraint of N—H = 0.88 ± 0.01 Å, and with Uiso(H) set to 1.2 Ueq(N). Owing to poor agreement, one reflection, i.e. (1 3 5), was omitted from the final cycles of refinement.

Discussion

Structural mimicry is an interesting concept in crystal engineering whereby the chemical exchange of substituents/residues does not impact upon the global molecular packing [5]. This implies the pair/set of substituents/residues either engage in comparable intermolecular interactions or do not engage in directional intermolecular interactions at all. In order to explore such phenomena, systematic crystallographic studies of closely related molecules are required. In this context, herein the X-ray crystal structure of MeOC(=S)N(H)(2-ClPh) is described and compared with its o-tolyl congenor [6].

The molecular structure is shown in the Figure (70% displacement elliposids) and features the anticipated syn-disposition of the thione-S and thioamide-N—H atoms. The central residue is strictly planar with the r.m.s. deviation for the S1,O1,N1,C1 atoms from their least-squares plane being 0.0040 Å. The molecule is twisted about the the N1—C2 bond with the C1—N1—C2—C7 torsion angle being 54.3(3)°. This results in a dihedral angle between the best planes through the SONC and phenyl rings of 53.06(8)°. To a first approximation, the chlorine atom lies to the same side of the molecule as does the thione-S atom.

In the molecular packing, thioamide-N—H⋯S(thione) hydrogen bonds are formed between centrosymmetrically-related molecules resulting in eight-membered thioamide synthons {⋯HNCS}2; N1–H1n⋯S1i: 2.57(2) Å and 165(2)° for symmetry operation i: 1 − x, 1 − y, 1 − z. The dimeric aggregates are connected into supramolecular layers parallel to [1 1̅ 0] via a combination of π–π stacking interactions between the tolyl rings [inter-ring centroid separation = 3.5864(16) Å for symmetry operation ii: 1 − x, 1 − y, − z] and weak C8–H8a⋯π(tolyl) contacts [H8a⋯ring centroid separation = 2.90 Å and angle at H8a = 122° for symmetry operation iii: x, y, 1 − z]. The chlorine atoms project to either side of the layer with possibly the most important interlayer contact being a weak Cl⋯O halogen bond, i.e. Cl1⋯O1 of 3.228(2) Å [symmetry operation iv: 1 − x, y, 1 − z].

The observed molecular conformation in the title compound is in accord with previous studies [7, 8] and with the structure of the o-tolyl derivative [6]. The latter also crystallises in a triclinic crystal system with very similar unit cell dimensions (V = 461.38(19) Å3) and a single independent molecule in the asymmetric unit which is also twisted; the dihedral angle between the SONC and phenyl planes is 51.89(5)°. In the molecular packing of the o-tolyl derivative, supramolecular layers parallel to [0 1 1̅] are formed via thioamide-N—H⋯S(thione) hydrogen bonds, leading to dimers, and π–π stacking interactions. The connections between layers are of the type tolyl-methyl-C—H⋯π(tolyl). Thus, it is possible to conclude that there are relatively similar and important roles for each of the chlorine atom and tolyl-methyl substituent in their respective molecular packing.

Acknowledgements

The University of Malaya’s X-ray laboratory is thanked for the data collection. Sunway University is thanked for support of biological and crystal engineering studies of metal thiocarbamides.

References

Agilent Technologies: CrysAlisPRO. Agilent Technologies, Santa Clara, CA, USA (2011).Suche in Google Scholar

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Tan, Y. S.; Yeo, C. I.; Tiekink, E. R. T.: Crystal structure of N-(3-chlorophenyl)ethoxycarbothioamide, C9H10ClNOS. Z. Kristallogr. NCS 233 (2018) 511–512.10.1515/ncrs-2017-0403Suche in Google Scholar

Received: 2017-12-16
Accepted: 2018-3-16
Published Online: 2018-3-27
Published in Print: 2018-5-24

©2018 Chien Ing Yeo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Artikel in diesem Heft

  1. Cover and Frontmatter
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  3. Crystal structure of 4-methoxy-6-phenyl-2H-pyran-2-one, C12H10O3
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  6. Crystal structure of (5Z,10Z)-3,13-dichloro-17,18-dioxo-5,11-diphenyl-8,9,17,18-tetrahydro-7H-dibenzo[e,n][1,4,8,12]tetraazacyclopentadecine-16,19-diido-κ4N,N′,N′′,N′′′)copper(II), C31H22N4O2Cl2Cu
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  14. Crystal structure of diethyl 2-(2-chlorophenyl)-1,3-dioxane-5,5-dicarboxylate, C16H19Cl1O6
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  17. Hydrothermal synthesis and crystal structure of poly[bis(μ2-3-(3,5-dicarboxyphenoxy)phthalato-κ3O,O′:O′′)-(μ2-1,2-di(pyridin-4-yl)ethane-κ2N:N′)copper(II)], C22H14CuNO9
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  19. The crystal structure of 6-(4-bromobenzyl)-1,3,5-trimethyl-7-phenyl-1,5-dihydro-2H-pyrrolo[3,2-d]pyrimidine-2,4(3H)-dione, C22H20BrN3O2
  20. Synthesis and crystal structure of catena-poly[bis(2-(2-((2,6-dichlorophenyl)amino)phenyl)acetato-κO2O′,O′′)-(μ2-1,4-di(pyridin-4-yl)benzene-κ2N:N′)zinc(II)], C44H32N4ZnCl4O4
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  23. Crystal structure of (dimethylformamide-κO)(perchlorato-κ2O,O′){μ2-6,6′-((1,2-phenylenebis(azanylylidene))bis(methanylylidene))bis(4-bromo-2-methoxyphenolate)-κ8N,N′,O:O,O′:O′,O′′,O′′′}sodium(I)nickel(II), C25H23Br2ClN3NaNiO9
  24. The crystal structure of catena-poly[bis((4-aminophenyl)sulfonyl)(pyrimidin-2-yl)amido-κ2N,N′)-bis(μ2-4,4′-bipyridine-N,N′2N:N′)zinc(II) – methanol (1/2), C32H34N10O6S2Zn
  25. Synthesis and crystal structure poly[aqua(μ3-2-(((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)ammonio)acetate-κ4O,O′:O′′:O′′′) sodium] monohydrate, C18H18NNaO11S
  26. Crystal structure of methyl 4′-amino-3′,5′-diisopropyl-[1,1′-biphenyl]-4-carboxylate, C20H25NO2
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  28. Crystal structure of 2-(2-(1-Chlorocyclopropyl)-3-(2-chlorophenyl)-2-hydroxypropyl)-1H-1,2,4-triazole-3(2H)-thione, C14H15Cl2N3OS
  29. Crystal structure of methyl 4′-amino-3′,5′-dimethyl-[1,1′-biphenyl]-4-carboxylate, C16H17NO2
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  38. Crystal structure of 5-methyl-3,3-diphenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C25H25NO2S
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  42. Crystal Structure of bis(1-(phenylsulfonyl)-2-(1-(pyrazin-2-yl)ethylidene)hydrazin-1-ido-κ3N,N′,O)copper(II), C24H22N8O4S2Cu
  43. Synthesis and crystal structure of poly[aqua{μ3-(1S,2S)-1-((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)pyrrolidin-1-ium-2-carboxylato-κ4O,O′:O′′:O′′′}sodium(I)] monohydrate, C21H22NNaO11S
  44. Halogen bonds in the crystal structure of 1,4-diiodotetrafluorobenzene–1,2-bis(4-pyridyl)propane (1/1), C19H14F4I2N2
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  46. Crystal structure of bis(μ-N-i-propyl-N-n-propyldithiocarbamato-κ3S,S′:S)bis(N-i-propyl-N-n-propyldithiocarbamato-κ2S,S′)dicadmium(II), C28H56Cd2N4S8
  47. Crystal structure of bis(μ2-di-n-butyldithiocarbamato-κ3S,S′:S3S:S:S′)-hexacarbonyl-di-rhenium(I), C24H36N2O6Re2
  48. Crystal structure of 7-(4-methylphenyl)imidazo[1,2-a][1,3,5]triazin-4-amine, C12H11N5
  49. Crystal structure of the co-crystal O-isopropyl phenylcarbamothioate – 4,4′-bipyridine (2/1), C15H17N2OS
  50. Crystal structure of the coordination polymer catena-poly[chlorido-{μ2-2-(((3,5-dimethyl-1H-pyrazol-1-yl)methyl)amino)-3-hydroxybutanoato-κ4N,N,O:O′}copper(II)], C11H16ClCuN2O3
  51. Synthesis and crystal structure of bis(μ2-acetato-κ2O:O′)-di(ethanol)-bis{μ2-5-(N,N′-diethylamine)-5′-methoxyl-2,2′-[ethylenediyldioxybis(nitrilomethylidyne)]diphenolato-κ6O:O,N,N,O′:O′}trinickel(II) – ethanol – acetonitrile (1/2/2), C58H86Ni3N8O18
  52. Crystal structure of the bis((E)-O-ethyl-N-phenylthiocarbamate) – 4,4′-bipyridine co-crystal (2/1), C28H30N4O2S2
  53. Crystal structure of the (E)-O-methyl-N-phenyl-thiocarbamate – 4,4′-bipyridine (1/1), C18H17N3OS
  54. Crystal structure of bis(μ2-diethyldithiocarbamato-κ3S,S′:S′)-bis(tricyclohexylphosphane-κP)dicopper(I), C46H86Cu2N2P2S4
  55. Crystal structure of N-(3-chlorophenyl)ethoxycarbothioamide, C9H10ClNOS
  56. Crystal structure of bis(μ2-pyrrolidine-1-carbodithioato-κ3S,S′:S;κ3S:S:S′)-bis(tricyclohexylphosphane-P)-di-copper(I), C46H82Cu2N2P2S4
  57. Crystal structure of N-(2-chlorophenyl)methoxycarbothioamide, C8H8ClNOS
  58. Crystal structure of chlorido-methanol-(N-(2-(oxy)-3-methoxybenzylidene)pyridine-4-carbohydrazonato-κ3O,N,O′)-(4-methylphenyl)methyl-tin(IV), C23H24ClN3O4Sn
  59. Crystal structure of N-(3-chlorophenyl)(propan-2-yloxy)carbothioamide, C10H12ClNOS
  60. Crystal structure of 1-[(Z)-[4-(4-methoxyphenyl)butan-2-ylidene]amino]-3-phenylurea, C18H21N3O2
  61. A triclinic polymorph of bis(μ-N,N-bis(2-hydroxyethyl)dithiocarbamato-κ3S,S′:S′) bis(N,N-bis(2-hydroxyethyl)dithiocarbamato-κ2S:S′)zinc(II), C20H40N4O8S8Zn2
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