Startseite Crystal structure of the co-crystal O-isopropyl phenylcarbamothioate – 4,4′-bipyridine (2/1), C15H17N2OS
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Crystal structure of the co-crystal O-isopropyl phenylcarbamothioate – 4,4′-bipyridine (2/1), C15H17N2OS

  • Chien Ing Yeo und Edward R.T. Tiekink EMAIL logo
Veröffentlicht/Copyright: 5. April 2018

Abstract

C15H17N2OS, triclinic, P1̄ (no. 2), a = 5.8595(3) Å, b = 9.2967(4) Å, c = 14.0545(8) Å, α = 83.320(4), β = 89.240(4), γ = 74.524(4), V = 732.71(7) Å3, Z = 2, Rgt(F) = 0.0458, wRref(F2) = 0.1231, T = 100 K.

CCDC no.:: 1830651

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Block, colourless
Size:0.10 × 0.05 × 0.05 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.22 mm−1
Diffractometer, scan mode:SuperNova, ω-scans
θmax, completeness:27.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:5109, 3354, 0.035
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2762
N(param)refined:178
Programs:CrysAlisPRO [1], SHELX [2, 3] , WinGX and ORTEP [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
S10.82329(9)−0.06274(5)0.19555(4)0.02853(15)
O10.5643(2)0.20073(14)0.10848(10)0.0257(3)
N10.4505(3)0.13231(16)0.25485(11)0.0196(3)
H1N0.456(4)0.065(3)0.3029(17)0.028(6)*
C20.2515(3)0.25973(18)0.25604(12)0.0167(3)
C30.0502(3)0.23730(19)0.30264(13)0.0202(4)
H30.04850.13940.33040.024*
C4−0.1482(3)0.3574(2)0.30864(13)0.0232(4)
H4−0.28470.34130.34060.028*
C5−0.1476(3)0.5007(2)0.26827(13)0.0244(4)
H5−0.28340.58280.27200.029*
C60.0533(3)0.5226(2)0.22247(14)0.0241(4)
H60.05390.62070.19470.029*
C70.2542(3)0.40392(18)0.21635(13)0.0197(4)
H70.39150.42090.18550.024*
C10.6066(3)0.09765(18)0.18471(13)0.0195(4)
C80.7202(3)0.1838(2)0.02449(14)0.0279(4)
H80.78730.07470.01780.034*
C90.5605(4)0.2597(3)−0.06113(16)0.0412(6)
H9A0.43020.2126−0.06430.062*
H9B0.65210.2489−0.12000.062*
H9C0.49590.3666−0.05440.062*
C100.9150(4)0.2537(3)0.03901(17)0.0477(6)
H10A1.00550.20360.09730.072*
H10B0.84840.36050.04550.072*
H10C1.01980.2432−0.01610.072*
N20.4473(3)−0.11967(17)0.40417(12)0.0265(4)
C110.6235(3)−0.1965(2)0.46444(15)0.0271(4)
H110.7364−0.14690.48180.033*
C120.6514(3)−0.34441(19)0.50318(14)0.0230(4)
H120.7810−0.39350.54550.028*
C130.4892(3)−0.42063(17)0.47995(12)0.0171(3)
C140.3044(4)−0.3405(2)0.41794(16)0.0315(5)
H140.1872−0.38640.40010.038*
C150.2921(4)−0.1928(2)0.38220(16)0.0346(5)
H150.1649−0.14080.33940.042*

Source of material

4,4′-Bipyridine (Merck; bpy; 0.05 g, 0.32 mmol) and 2.1 mole equivalent of i-PrOC(=S)N(H)Ph [5] (0.11 g, 0.67 mmol), each in dichloromethane (10 mL), were mixed and stirred at 323 K for 3 h. The resulting mixture was left for evaporation at room temperature after which colourless blocks were deposited. Anal. Calc. for C15H17N2OS: C, 65.90; H, 6.27; N, 10.25. Found: C, 63.28; H, 6.66; N, 10.24. IR (cm−1): 3164 (br) ν(N—H); 1593 (s) ν(C=C; byp); 1448 (s) ν(C—N); 1393 (s) ν(C—N, bpy); 1204 (s) ν(C=S); 1087 (vs) ν(C—O).

Experimental details

The C-bound H atoms were geometrically placed (C—H = 0.95−1.00 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The N-bound H-atom was located in difference Fourier map but refined with a distance restraint of N—H = 0.88 ± 0.01 Å, and with Uiso(H) set to 1.2Uequiv(N).

Discussion

The alkoxycarbothioamides, i.e. molecules of the general formula ROC(=S)N(H)R′ for R, R′ = alkyl/aryl [6], find interest in crystal engineering endeavours in terms of their ability to form thioamide-N—H⋯S(thione) hydrogen bonds and the influence of this upon molecular conformation [5], [6], [7] as well as their propensity to form co-crystals [8]. As a continuation of the latter studies, the title 2:1 co-crystal was isolated.

As indicated from the figure (50% displacement ellipsoids), there is a thioamide-N—H⋯S(thione) hydrogen bond connecting the co-crystal coformers [N1—H⋯S1 = 2.11(3) Å and 170(2)°]. The strictly planar 4,4′-bipyridyl molecule is situated about a centre of inversion with the unlabelled atoms of the figure related by the symmetry operation: 1 − x, −1 − y, 1 − z. The three-molecule aggregate resembles that observed in the previously reported 2:1 co-crystal of the title carbothioamide with trans-1,2-bis(4-pyridyl)ethene [8]. Indeed, all known co-crystals of this type, i.e. [ROC(=S)N(H)R′]2(bipyridyl-type molecule), six in all, feature a similarly assembled three-molecule aggregate [8]. The syn disposition of the thioamide-N—H and thione-S atoms is consistent with that observed in the three other known structures containing the identical i-PrOC(=S)N(H)Ph molecule. An overlap diagram (not shown) of the molecule reported herein, the parent compound [5], the molecule in the 2:1 co-crystal with trans-1,2-bis(4-pyridyl)ethene [8] and that with the thione-S coordinating a (Ph3P)2CuCl entity [9] shows a remarkable consistency of conformation. The major difference arises, in fact, for the i-Pr group in the title compound which is rotated about the O—C axis by approximately 60° compared to the three literature molecules. The dihedral angles between the central CNOS residue and appended N-bound phenyl ring vary from apprimxately 28° in the copper(I) complex [9] to 47° in the co-crystal [8].

Acknowledgements

The University of Malaya’s X-ray laboratory is thanked for the data collection. Sunway University is thanked for support of biological and crystal engineering studies of metal thiocarbamides.

References

Agilent Technologies. CrysAlis PRO. Agilent Technologies, Santa Clara, CA, USA (2010)Suche in Google Scholar

Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Suche in Google Scholar PubMed

Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Suche in Google Scholar PubMed PubMed Central

Farrugia, L. J.: WinGX and ORTEP for Windows: an update. J. Appl. Cryst. 45 (2012) 849–854.10.1107/S0021889812029111Suche in Google Scholar

Kuan, F. S.; Mohr, F.; Tadbuppa, P. P.; Tiekink, E. R. T.: Principles of crystal packing in O-isopropyl-Naryl-thiocarbamides: iPrOC(=S)N(H)C6H4-4-Y: Y = H, Cl, and Me. CrystEngComm 9 (2007) 574–581.10.1039/B701489ASuche in Google Scholar

Jotani, M. M.; Yeo, C. I.; Tiekink, E. R. T.: A new monoclinic polymorph of N-(3-methylphenyl) ethoxycarbothioamide: crystal structure and Hirshfeld surface analysis. Acta Crystallogr. E73 (2017) 1889–1897.10.1107/S2056989017016280Suche in Google Scholar PubMed PubMed Central

Ho, S. Y.; Bettens, R. P. A.; Dakternieks, D.; Duthie, A.; Tiekink, E. R. T.: Prevalence of the thioamide {⋯H—N—C=S}2 synthon – solid-state (X-ray crystallography), solution (NMR) and gas-phase (theoretical) structures of O-methyl-N-aryl-thiocarbamides. CrystEngComm 7 (2005) 682–689.10.1039/b514254gSuche in Google Scholar

Ellis, C. A.; Miller, M. A.; Spencer, J.; Zukerman-Schpector, J.; Tiekink, E. R. T.: Co-crystallization experiments of thiocarbamides with bipyridine-type molecules. CrystEngComm 11 (2009) 1352–1361.10.1039/b822555aSuche in Google Scholar

Yeo, C. I.; Halim, S. N. A.; Ng, S. W.; Tan, S. L.; Zukerman-Schpector, J.; Ferreira, M. A. B.; Tiekink, E. R. T.: Investigations of putative arene-C—H⋯π(quasi-chelate ring) interactions in copper(I) crystal structures. Chem. Commun. 50 (2014) 5984–5986.10.1039/C4CC02040ESuche in Google Scholar

Received: 2017-11-28
Accepted: 2018-3-18
Published Online: 2018-4-5
Published in Print: 2018-5-24

©2018 Chien Ing Yeo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Artikel in diesem Heft

  1. Cover and Frontmatter
  2. Bis(tetraethylammonium) carbonate – boric acid – water (1/2/5), C17H56B2N2O14
  3. Crystal structure of 4-methoxy-6-phenyl-2H-pyran-2-one, C12H10O3
  4. Crystal structure of tris{(3-((E)-(((E)-2-oxidobenzylidene)hydrazono)methyl)-2-oxo-2H-chromen-4-olato-κ3O,N:N′)}dicobalt(III)tris(dimethylformamide), C60H50Co2N9O15
  5. Crystal structure of poly[bis(1-methyl-[4,4′-bipyridin]-1-ium-κN)-tetrakis(μ3-sulfato-κ3O:O′:O′′)trizinc(II)], C22H22Zn3N4O16S4
  6. Crystal structure of (5Z,10Z)-3,13-dichloro-17,18-dioxo-5,11-diphenyl-8,9,17,18-tetrahydro-7H-dibenzo[e,n][1,4,8,12]tetraazacyclopentadecine-16,19-diido-κ4N,N′,N′′,N′′′)copper(II), C31H22N4O2Cl2Cu
  7. Crystal structure of bis{5-methoxy-2-(((2-oxo-2H-chromen-6-yl)imino)methyl)phenolato-κ2N,O}zinc(II), C34H24N2O8Zn
  8. Crystal structure of 2,2′-((((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(azanylylidene))bis(methanylylidene))diphenolato-κ2N4O)nickel(II), C28H22N2O4Ni
  9. Crystal structure of 1,1′-((1E,1′E)-(((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(azanylylidene))bis(methanylylidene))bis(naphthalen-2-olato)cobalt(II), C36H26N2O4Co
  10. Crystal structure of camptothecin, C20H16N2O4
  11. Crystal structure of (2-(chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylato–κ2O,O′)(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)nickel(II) perchlorate monohydrate, Ni(C16H36N4)(C12H12O4Cl)ClO4⋅H2O
  12. Crystal structure of 3-(2-chloro-6-methoxyquinolin-3-yl)-5-phenylisoxazole (C19H13ClN2O2)
  13. Crystal structure of tetrakis(μ2-acetato-κ2O:O′)-bis{[(E)-2,6-diisopropyl-N-(pyridin-3-ylmethylene)aniline]copper (II)}, C44H56Cu2N4O8
  14. Crystal structure of diethyl 2-(2-chlorophenyl)-1,3-dioxane-5,5-dicarboxylate, C16H19Cl1O6
  15. Crystal structure of (μ2-2,2′-bipyridine-3,3′-dicarboxylato)-bis(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane)-di-nickel(II) perchlorate N,N′-dimethylformamide solvate, C50H92Cl2N12Ni2O14
  16. Crystal structure of catena-poly[triaqua(μ2-1,2-bis(4-pyridyl)ethane-κ2N:N′)-(1,2-bis(4-pyridyl)ethane-κN)nickel(II)] 2-aminonicotinate nitrate – 1,2-bis(4-pyridyl)ethane – water (2/1/8), C36H44N8NiO12
  17. Hydrothermal synthesis and crystal structure of poly[bis(μ2-3-(3,5-dicarboxyphenoxy)phthalato-κ3O,O′:O′′)-(μ2-1,2-di(pyridin-4-yl)ethane-κ2N:N′)copper(II)], C22H14CuNO9
  18. Crystal structure of catena-poly[aqua-(methanol-κO)-bis(μ2-4-(pyridin-4-yl)benzoato-κ2N:O)-bis(triphenylphospine-κP)disilver(I)], C61H52Ag2N2O6P2
  19. The crystal structure of 6-(4-bromobenzyl)-1,3,5-trimethyl-7-phenyl-1,5-dihydro-2H-pyrrolo[3,2-d]pyrimidine-2,4(3H)-dione, C22H20BrN3O2
  20. Synthesis and crystal structure of catena-poly[bis(2-(2-((2,6-dichlorophenyl)amino)phenyl)acetato-κO2O′,O′′)-(μ2-1,4-di(pyridin-4-yl)benzene-κ2N:N′)zinc(II)], C44H32N4ZnCl4O4
  21. Crystal structure of diaqua-bis[N-phenyl-2-(quinolin-8-yloxy)acetamide-κ3-N,O,O′]-nitrato(κ2O,O′)-cerium(III) dinitrate - acetone (1/2), C40H44N7O17Ce
  22. Crystal structure of the 2D coordination polymer poly[aqua(μ2-2,2′-(1,2-phenylene)diacetato-κ3O,O′:O′)-(μ2-4,4′-bis((1H-1,2,4-triazol-1-yl)methyl)-1,1′-biphenyl-κ2N:N′)cobalt(II)], C28H26CoN6O5
  23. Crystal structure of (dimethylformamide-κO)(perchlorato-κ2O,O′){μ2-6,6′-((1,2-phenylenebis(azanylylidene))bis(methanylylidene))bis(4-bromo-2-methoxyphenolate)-κ8N,N′,O:O,O′:O′,O′′,O′′′}sodium(I)nickel(II), C25H23Br2ClN3NaNiO9
  24. The crystal structure of catena-poly[bis((4-aminophenyl)sulfonyl)(pyrimidin-2-yl)amido-κ2N,N′)-bis(μ2-4,4′-bipyridine-N,N′2N:N′)zinc(II) – methanol (1/2), C32H34N10O6S2Zn
  25. Synthesis and crystal structure poly[aqua(μ3-2-(((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)ammonio)acetate-κ4O,O′:O′′:O′′′) sodium] monohydrate, C18H18NNaO11S
  26. Crystal structure of methyl 4′-amino-3′,5′-diisopropyl-[1,1′-biphenyl]-4-carboxylate, C20H25NO2
  27. Crystal structure of (η6-1-isopropyl-4-methyl benzene)-(N-(2,5-dichlorophenyl)-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) perchlorate, C22H22Cl4N2O4Ru
  28. Crystal structure of 2-(2-(1-Chlorocyclopropyl)-3-(2-chlorophenyl)-2-hydroxypropyl)-1H-1,2,4-triazole-3(2H)-thione, C14H15Cl2N3OS
  29. Crystal structure of methyl 4′-amino-3′,5′-dimethyl-[1,1′-biphenyl]-4-carboxylate, C16H17NO2
  30. The crystal structure of 1-(5-ferrocenyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pentan-1-on, C19H19F3FeN2O
  31. The crystal structure of (3S,12R,20R,24S)-3,12-diacetyl-20,24-epoxy-dammarane-3,12,25-triol acetone solvate, C34H56O6
  32. Crystal structure of methyl 10-(pyridin-4-yl)-anthracene-9-carboxylate, C21H15NO2
  33. Crystal structure of catena-poly[diaqua-bis(di(N2,N6-dihydroxypyridine-2,6-dicarboxamide))potassium(I)]tetrahydrate, C14H25N6O14K
  34. Crystal structure of poly{[μ2-(E)-1,4-bis(1H-benzo[d]imidazol-1-yl)but-2-ene-κ2N:N′][μ3–cyclohexane-1,4-dicarboxylato-κ4O,O′:O′′:O′′′]cadmium(II)}, C26H26CdN4O4
  35. Crystal structure of poly[aqua(μ3-[2,2′-bipyridine]-3,3′-dicarboxylato-κ4N,N′:O:O′)zinc(II)] – dimethylformamide (1/1), C15H15N3O6Zn
  36. The crystal structure of poly[tetraaqua-tris(μ2-2,6-di(1H-imidazol-1-yl)naphthalene-κ2N:N′)-bis(thiophene-2,5-dicarboxylato-κ1O)]dicobalt(II), C30H24CoN6O6S
  37. Crystal structure of (S)-1-(5-(anthracen-9-yl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl)propan-1-one, C26H22N2O
  38. Crystal structure of 5-methyl-3,3-diphenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C25H25NO2S
  39. Synthesis and crystal structure of μ-[1,1′-di(mesitylphosphanido)ferrocene]bis[η5-cyclopentadienylnickel(II)] tetrahydrofurane solvate, C42H48FeNi2OP2
  40. Synthesis and crystal structure of (E)-1-(4-(((E)-5-chloro-2-hydroxybenzylidene)amino)phenyl)ethan-1-one O-methyl oxime, C16H15ClN2O2
  41. Crystal structure of bis(1-(phenylsulfonyl)-2-(1-(pyrazin-2-yl)ethylidene)hydrazin-1-ido-κ3N,N′,O)nickel(II), C24H22N8O4S2Ni
  42. Crystal Structure of bis(1-(phenylsulfonyl)-2-(1-(pyrazin-2-yl)ethylidene)hydrazin-1-ido-κ3N,N′,O)copper(II), C24H22N8O4S2Cu
  43. Synthesis and crystal structure of poly[aqua{μ3-(1S,2S)-1-((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)pyrrolidin-1-ium-2-carboxylato-κ4O,O′:O′′:O′′′}sodium(I)] monohydrate, C21H22NNaO11S
  44. Halogen bonds in the crystal structure of 1,4-diiodotetrafluorobenzene–1,2-bis(4-pyridyl)propane (1/1), C19H14F4I2N2
  45. Crystal structure of bis(μ-N-i-propyl-N-n-propyldithiocarbamato-κ2S:S′) bis(N-i-propyl-N-n-propyldithiocarbamato-κ2S,S′)dizinc(II), C28H56N4S8Zn2
  46. Crystal structure of bis(μ-N-i-propyl-N-n-propyldithiocarbamato-κ3S,S′:S)bis(N-i-propyl-N-n-propyldithiocarbamato-κ2S,S′)dicadmium(II), C28H56Cd2N4S8
  47. Crystal structure of bis(μ2-di-n-butyldithiocarbamato-κ3S,S′:S3S:S:S′)-hexacarbonyl-di-rhenium(I), C24H36N2O6Re2
  48. Crystal structure of 7-(4-methylphenyl)imidazo[1,2-a][1,3,5]triazin-4-amine, C12H11N5
  49. Crystal structure of the co-crystal O-isopropyl phenylcarbamothioate – 4,4′-bipyridine (2/1), C15H17N2OS
  50. Crystal structure of the coordination polymer catena-poly[chlorido-{μ2-2-(((3,5-dimethyl-1H-pyrazol-1-yl)methyl)amino)-3-hydroxybutanoato-κ4N,N,O:O′}copper(II)], C11H16ClCuN2O3
  51. Synthesis and crystal structure of bis(μ2-acetato-κ2O:O′)-di(ethanol)-bis{μ2-5-(N,N′-diethylamine)-5′-methoxyl-2,2′-[ethylenediyldioxybis(nitrilomethylidyne)]diphenolato-κ6O:O,N,N,O′:O′}trinickel(II) – ethanol – acetonitrile (1/2/2), C58H86Ni3N8O18
  52. Crystal structure of the bis((E)-O-ethyl-N-phenylthiocarbamate) – 4,4′-bipyridine co-crystal (2/1), C28H30N4O2S2
  53. Crystal structure of the (E)-O-methyl-N-phenyl-thiocarbamate – 4,4′-bipyridine (1/1), C18H17N3OS
  54. Crystal structure of bis(μ2-diethyldithiocarbamato-κ3S,S′:S′)-bis(tricyclohexylphosphane-κP)dicopper(I), C46H86Cu2N2P2S4
  55. Crystal structure of N-(3-chlorophenyl)ethoxycarbothioamide, C9H10ClNOS
  56. Crystal structure of bis(μ2-pyrrolidine-1-carbodithioato-κ3S,S′:S;κ3S:S:S′)-bis(tricyclohexylphosphane-P)-di-copper(I), C46H82Cu2N2P2S4
  57. Crystal structure of N-(2-chlorophenyl)methoxycarbothioamide, C8H8ClNOS
  58. Crystal structure of chlorido-methanol-(N-(2-(oxy)-3-methoxybenzylidene)pyridine-4-carbohydrazonato-κ3O,N,O′)-(4-methylphenyl)methyl-tin(IV), C23H24ClN3O4Sn
  59. Crystal structure of N-(3-chlorophenyl)(propan-2-yloxy)carbothioamide, C10H12ClNOS
  60. Crystal structure of 1-[(Z)-[4-(4-methoxyphenyl)butan-2-ylidene]amino]-3-phenylurea, C18H21N3O2
  61. A triclinic polymorph of bis(μ-N,N-bis(2-hydroxyethyl)dithiocarbamato-κ3S,S′:S′) bis(N,N-bis(2-hydroxyethyl)dithiocarbamato-κ2S:S′)zinc(II), C20H40N4O8S8Zn2
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