Home Physical Sciences Crystal structure of (2-(chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylato–κ2O,O′)(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)nickel(II) perchlorate monohydrate, Ni(C16H36N4)(C12H12O4Cl)ClO4⋅H2O
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Crystal structure of (2-(chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylato–κ2O,O′)(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)nickel(II) perchlorate monohydrate, Ni(C16H36N4)(C12H12O4Cl)ClO4⋅H2O

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Published/Copyright: February 16, 2018

Abstract

C28H50Cl2N4NiO9, monoclinic, P21/n, a = 10.333(4) Å, b = 26.305(9) Å, c = 12.640(5) Å, β = 102.421(4)°, V = 3355(2) Å3, Z = 4, Rgt(F) = 0.0391, wRref(F2) = 0.1090, T = 296(2) K.

CCDC no.: 1569958

Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Prism, blue
Size:0.45 × 0.23 × 0.20 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.79 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
θmax, completeness:27.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:37530, 7665, 0.029
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 6114
N(param)refined:410
Programs:Bruker programs [1], SHELX [2, 3] , Diamond [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Ni10.64292(2)0.151289(9)−0.02413(2)0.02668(8)
Cl10.84508(6)0.19698(2)0.66895(5)0.04612(15)
Cl20.75668(9)0.00377(4)0.59676(6)0.0854(3)
N10.79790(18)0.09646(7)0.00534(16)0.0375(4)
N20.60361(17)0.12316(6)−0.18222(14)0.0311(4)
N30.49349(17)0.20762(7)−0.06464(14)0.0321(4)
N40.77366(17)0.21027(7)−0.03629(14)0.0323(4)
O10.63312(15)0.16210(6)0.13897(12)0.0358(3)
O1W0.3453(3)0.01373(10)0.9597(2)0.0768(6)
O20.53077(15)0.09638(6)0.05509(12)0.0370(3)
O30.71756(17)0.08111(6)0.35529(13)0.0433(4)
O40.57426(17)0.02152(6)0.25934(14)0.0439(4)
O50.7573(3)0.22473(12)0.7206(2)0.0948(9)
O60.9019(5)0.22828(16)0.6117(4)0.198(2)
O70.7763(4)0.16257(18)0.5995(5)0.197(3)
O80.9394(4)0.17401(19)0.7460(3)0.172(2)
C10.7998(3)0.07412(10)−0.1014(2)0.0502(6)
H1A0.83690.0401−0.09180.060*
H1B0.85530.0946−0.13760.060*
H1C0.76890.07120.04370.045*
H1WA0.382(3)−0.0013(12)0.912(2)0.092*
H1WB0.400(3)0.0382(10)0.987(3)0.092*
C20.6613(3)0.07187(9)−0.1698(2)0.0457(6)
H2A0.66350.0580−0.24050.055*
H2B0.60710.0498−0.13580.055*
H2C0.65270.1418−0.21980.037*
C30.4656(2)0.12269(9)−0.24732(18)0.0366(5)
H30.41420.0984−0.21430.044*
H3A0.46760.2144−0.00170.039*
C40.4615(3)0.10565(10)−0.3639(2)0.0515(6)
H4A0.51570.1279−0.39620.077*
H4B0.37180.1069−0.40490.077*
H4C0.49420.0715−0.36360.077*
H4D0.78230.2112−0.10640.039*
C50.4002(2)0.17467(9)−0.24935(18)0.0403(5)
H5A0.31810.1734−0.30360.048*
H5B0.45730.1990−0.27470.048*
C60.3679(2)0.19621(9)−0.14575(18)0.0374(5)
C70.2830(3)0.24402(11)−0.1753(2)0.0542(7)
H7A0.27130.2605−0.11030.081*
H7B0.19800.2346−0.21840.081*
H7C0.32640.2668−0.21580.081*
C80.2888(2)0.15861(11)−0.0933(2)0.0492(6)
H8A0.34080.1286−0.07230.074*
H8B0.20890.1497−0.14410.074*
H8C0.26680.1739−0.03040.074*
C90.5625(2)0.25402(9)−0.0887(2)0.0429(5)
H9A0.51300.2838−0.07570.052*
H9B0.56820.2540−0.16430.052*
C100.6989(3)0.25588(9)−0.0183(2)0.0445(6)
H10A0.74450.2860−0.03510.053*
H10B0.69310.25770.05720.053*
C110.9096(2)0.20960(10)0.03253(19)0.0425(5)
H110.90290.21440.10810.051*
C120.9933(3)0.25259(12)0.0023(3)0.0648(8)
H12A1.00280.2481−0.07100.097*
H12B1.07910.25220.05010.097*
H12C0.95070.28450.00880.097*
C130.9800(2)0.15931(10)0.0243(2)0.0461(6)
H13A0.97690.1532−0.05190.055*
H13B1.07240.16390.05920.055*
C140.9325(2)0.11101(10)0.0703(2)0.0466(6)
C150.9219(3)0.11795(13)0.1877(2)0.0591(7)
H15A0.85340.14220.19130.089*
H15B1.00480.13010.22950.089*
H15C0.90070.08600.21640.089*
C161.0338(3)0.06865(13)0.0662(3)0.0728(9)
H16A1.00030.03690.08660.109*
H16B1.11580.07660.11550.109*
H16C1.04870.0660−0.00600.109*
C170.5631(2)0.12332(8)0.13939(17)0.0312(4)
C180.5107(2)0.11112(9)0.24052(18)0.0380(5)
C190.3933(3)0.14688(11)0.2405(3)0.0598(8)
H19A0.32880.14290.17390.090*
H19B0.42400.18140.24700.090*
H19C0.35370.13870.30040.090*
C210.6182(3)0.11968(9)0.34236(19)0.0459(6)
H21A0.65900.15260.33810.055*
H21B0.57830.11980.40520.055*
C220.4651(2)0.05629(9)0.2406(2)0.0448(6)
H22A0.41480.05190.29650.054*
H22B0.40700.04860.17140.054*
C230.6603(2)0.03294(9)0.35933(19)0.0418(5)
H230.60950.03280.41650.050*
C240.7670(2)−0.00602(9)0.3851(2)0.0434(5)
C250.8165(3)−0.02216(11)0.4905(2)0.0511(6)
C260.9149(3)−0.05859(13)0.5148(3)0.0697(9)
H260.9467−0.06860.58620.084*
C270.9649(3)−0.07964(13)0.4339(3)0.0787(10)
H271.0309−0.10420.45000.094*
C280.9184(3)−0.06478(14)0.3290(3)0.0760(10)
H280.9530−0.07920.27380.091*
C290.8203(3)−0.02842(12)0.3047(2)0.0597(7)
H290.7893−0.01870.23300.072*

Source of material

An acetonitrile solution (20 mL) of [NiL](ClO4)2 (0.270 g, 0.5 mmol) (L = rac-5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane) was added to a solution of 2-(chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid (0.256 g, 1.0 mmol) and NaOH (0.04 g, 1.0 mmol) in the minimum amount of water. After a few days, blue crystals were separated in ∼ 30% yield. Anal. calcd. for C28H50Cl2N4NiO9: C, 46.95; H, 7.03; N, 7.82%. Found: C, 46.56; H, 7.52; N, 7.47%. IR data (cm−1, KBr): 3454(s), 3240(w), 1646(s), 1466(s), 1111(s).

Experimental details

Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

Discussion

Ketals have a subject of interest because they are usually used as a protection of carbonyl or synthetic intermediate [5], and have been widely applied in fragrance and flavors as well as a new type of spices.

Crystal structural analysis reveals that the title complex contains one cation [Ni(C16H36N4)(C12H12O4Cl)]+ (cf. the figure), one anion [ClO4], and one water molecule. Each Ni(II) ion is coordinated with four macrocyclic nitrogen atoms of L in a folded conformation and two carboxylate oxygen atoms of 2-(chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylate in cis-position. Neighbouring ions and molecules are connected to each other through hydrogen bonds.

Acknowledgements

This work was financially supported by the NSFC (51772091, 21602055), the Scientific Research Fund of Hunan Provincial Education Department (13CY029), the Program of the Key Discipline in Hunan University of Science and Engineering.

References

Bruker. APEX2, SAINT and SADABS. Brucker AXS Inc., Madison, WI, USA (2009).Search in Google Scholar

Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

Pennington, W. T.: DIAMOND–Visual Crystal Structure Information System. J. Appl. Cryst. 32 (2010) 1028–1029.10.1107/S0021889899011486Search in Google Scholar

Ono, D.; Yamamura, S.; Nakamura, M.: Preparation and properties of bis(sodium sulfate) types of cleavable surfactants derived from diethyl tartrate. J. Oleo. Sci. 54 (2005) 51–57.10.5650/jos.54.51Search in Google Scholar

Received: 2017-11-1
Accepted: 2018-1-30
Published Online: 2018-2-16
Published in Print: 2018-5-24

©2018 Guang-Chuan Ou et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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