Startseite Synthesis and crystal structure poly[aqua(μ3-2-(((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)ammonio)acetate-κ4O,O′:O′′:O′′′) sodium] monohydrate, C18H18NNaO11S
Artikel Open Access

Synthesis and crystal structure poly[aqua(μ3-2-(((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)ammonio)acetate-κ4O,O′:O′′:O′′′) sodium] monohydrate, C18H18NNaO11S

  • Hai-Lin Chen , Hong-Fang Lai , Yong-Ling Qin , Yue-Ning Guo , Ting Chen und Xiao-Yuan Huang
Veröffentlicht/Copyright: 16. Februar 2018

Abstract

C18H18NNaO11S, triclinic, P1̅ (no. 2), a = 8.2627(12) Å, b = 8.6490(11) Å, c = 14.1791(17) Å, α = 82.883(10)°, β = 76.954(12)°, γ = 69.729(12)°, V = 924.8(2) Å3, Z = 2, Rgt(F) = 0.0574, wRref(F2) = 0.1609, T = 293(2) K.

CCDC no.: 1820731

A part of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Block, colorless
Size:0.37 × 0.27 × 0.17 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.27 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
θmax, completeness:25°, >99%
N(hkl)measured, N(hkl)unique, Rint:5987, 3262, 0.039
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2465
N(param)refined:289
Programs:Bruker programs [1], SHELX [2], Diamond [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.2056(4)0.2321(4)−0.1916(2)0.0314(7)
C20.1629(4)0.1657(4)−0.0986(2)0.0327(7)
H20.12710.0733−0.09010.039*
C30.1730(4)0.2348(4)−0.0200(2)0.0313(7)
H30.14640.18780.04170.038*
C40.2233(4)0.3769(4)−0.0309(2)0.0281(7)
C50.2574(4)0.4440(4)−0.1239(2)0.0293(7)
C60.2547(4)0.3737(4)−0.2066(2)0.0288(7)
C70.2501(4)0.4455(4)0.0501(2)0.0302(7)
C80.2790(4)0.6048(4)0.0304(2)0.0288(7)
C90.3002(5)0.6615(4)−0.0620(2)0.0324(8)
H90.31620.7640−0.07420.039*
C100.2876(4)0.6996(4)0.1086(2)0.0290(7)
C110.2199(4)0.6691(4)0.2055(2)0.0303(7)
H110.16810.58710.22170.036*
C120.2273(4)0.7568(4)0.2783(2)0.0293(7)
C130.3028(4)0.8809(4)0.2561(2)0.0310(7)
C140.3663(4)0.9156(4)0.1600(2)0.0304(7)
H140.41481.00000.14390.037*
C150.3589(4)0.8278(4)0.0883(2)0.0328(8)
H150.40240.85410.02420.039*
C160.3160(4)0.4370(4)−0.3060(2)0.0314(7)
H16A0.38100.3440−0.34640.038*
H16B0.39630.4947−0.30250.038*
C170.0575(4)0.6997(4)−0.2990(2)0.0317(7)
H17A0.00850.6660−0.23420.038*
H17B−0.03940.7592−0.33150.038*
C180.1581(5)0.8136(4)−0.2920(2)0.0342(8)
N10.1710(4)0.5506(3)−0.35277(18)0.0304(6)
H1A0.22320.5811−0.41050.046*
H1B0.09750.4974−0.35900.046*
Na10.3016(3)0.9243(2)0.49647(11)0.0682(6)
O10.2065(3)0.1620(3)−0.27089(16)0.0390(6)
H10.16540.0841−0.24960.058*
O20.2538(4)0.3675(3)0.12934(16)0.0437(7)
O30.3007(3)0.5852(3)−0.13928(15)0.0341(6)
O40.3125(3)0.9639(3)0.32874(15)0.0385(6)
H130.33761.04860.30230.058*
O50.0753(4)0.5740(4)0.39625(17)0.0579(8)
O60.2752(4)0.6683(3)0.45350(16)0.0478(7)
O7−0.0077(4)0.8583(4)0.43419(19)0.0629(8)
O80.0913(3)0.9146(3)−0.22695(17)0.0426(6)
O90.2993(3)0.7982(3)−0.35233(16)0.0364(6)
O100.6423(5)0.8129(5)0.4942(2)0.0921(12)
H10A0.74610.74970.47340.138*
H10B0.62540.80040.55560.138*
O110.4328(5)0.2036(4)0.2745(3)0.0867(13)
H11A0.51550.21150.29790.130*
H11B0.40080.28200.23300.130*
S10.13460(13)0.71108(11)0.39952(6)0.0381(3)

Source of material

Formaldehyde solution (10 mL, 37%) and sodium 2-hydroxy-5-(7-hydroxy-4-oxo-4H-chromen-3-yl)benzenesulfonate (3.56 g, 0.01 mol) were added to ethanol (200 mL, 99.9%) and stirred for 0.5 h at 333 K. The saturated solution of L-threonine (1.89 g, 0.016 mol) was added. Then, water was added until a transparent solution was obtained. After 9 h, the mixture was filtered, and the residue was collected. The residue was dried at 383 K for 3 h. And the title product was obtained. Colorless block crystals were obtained by vapor diffusion of ethanol into a water solution of the title product for 4 days. NMR spectra were recorded on a Bruker AVANCE III instrument. The NMR data represent the complex in solution, which may result in a mixture of the protonated ligand and mono to oligonuclear complexes. 1H-NMR (500 MHz, D2O) δ: 8.12 (s, 1H, H9), 7.92 (d, J = 8.9 Hz, 1H, H3), 7.75 (s, 1H, H11), 7.35 (d, J = 8.5 Hz, 1H, H15), 6.99 (d, J = 8.9 Hz, 1H, H2), 6.93 (d, J = 8.5 Hz, 1H, H14), 4.44 (s, 2H, H16A, H16B), 3.64 (s, 2H, H17A, H17B). 13C-NMR (125 MHz, D2O) δ: 177.61 (C7), 171.15 (C18), 163.01 (C1), 156.38 (C5), 154.25 (C13), 153.22 (C9), 133.68 (C15), 128.32 (C12), 128.06 (C3), 127.64 (C11), 122.92 (C10), 122.54 (C8), 117.28 (C4), 115.84 (C14), 115.47 (C2), 104.64 (C6), 48.53 (C17), 39.34 (C16). IR spectra (potassium bromide pellet) were recorded on a Nicolet 6700. IR (v/cm−1): 3494, 3025, 2872, 2804, 1629, 1586, 1512, 1451, 1397, 1360, 1339, 1323, 1303, 1278, 1245, 1206, 1179, 1098, 1081, 1052, 1026, 960, 898, 868, 846, 820, 798, 779, 736, 643, 568, 543, 491, 455.

Experimental details

Carbon-bound H atoms were placed in calculated positions and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2 Ueq(C). The oxygen-bound and nitrogen-bond H atoms were located on a difference Fourier map.

Discussion

In the past decades, amino acids have been found to participate as the amine component in the Mannich reaction [4], [5], [6], [7], [8], [9]. It is an important method for synthesizing derivatives of natural amino acids with retention of the asymmetric centers. The goal of our work was to synthesize amino-acid derivatives of daidzein to obtain substances which retain the amine and carboxylic acid.

To extend this research, we used sodium 2-hydroxy-5-(7-hydroxy-4-oxo-4H-chromen-3-yl)benzenesulfonate to react with L-threonine and got a new unexpected complex. The studies on the bioactivity of the title compound are presently ongoing. The asymmetric unit of the title structure contains one sodium ion, one ligand, one coordinated water molecule and one uncoordinated water molecule (cf. the figure). The sodium ion is six-coordination and resides in a distorted octahedral environment defined by four oxygen atoms from three ligands, and other two oxygen atoms from two coordinated water molecules. Two coordinated water molecules were shared with another sodium ion. Four oxygen atoms (O4, O6, O9A, O10A) are at the equatorial plane of this octahedron, and the rest two oxygen atoms are at the axle of the octahedron. The sodium ions are linked with the neighboring sodium ions through the bridging of oxygen atoms, and forming four-member rings and eight-member rings. The bond lengths are Na1—O10 = 2.634(5) Å, Na1—O7A = 2.572(4) Å, Na1—O10A = 2.496(3) Å, Na1—O6 = 2.459(3) Å, Na1—O4 = 2.346(2) Å, Na1—O9A = 2.281(3) Å, respectively, which is in the normal range [10]. The nitrogen atom N1 is protonated. The sodium coordination polymer is extended to a 2D layer structure along the ac plane. The 2D layers form 3D framework structure by hydrogen bonds. It is obvious that the hydrogen bonds play important roles in the self-assembly and enhance stability of the resultant structure.

Acknowledgements

This work was financially supported by the Foundation of Guangxi Colleges Universities Key Laboratary of Exploitation and Utilization of Microbial and Botanical Resources (No. 2016HL004), the Education Department of Guangxi Zhuang Autonomous Region of China (No. KY2016LX290), the Foundation of Hechi University (No. XJ2016QN023) and the Education Department of Guangxi Zhuang Autonomous Region of China (No. KY2015ZD104).

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Received: 2017-10-18
Accepted: 2018-1-30
Published Online: 2018-2-16
Published in Print: 2018-5-24

©2018 Hai-Lin Chen et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Artikel in diesem Heft

  1. Cover and Frontmatter
  2. Bis(tetraethylammonium) carbonate – boric acid – water (1/2/5), C17H56B2N2O14
  3. Crystal structure of 4-methoxy-6-phenyl-2H-pyran-2-one, C12H10O3
  4. Crystal structure of tris{(3-((E)-(((E)-2-oxidobenzylidene)hydrazono)methyl)-2-oxo-2H-chromen-4-olato-κ3O,N:N′)}dicobalt(III)tris(dimethylformamide), C60H50Co2N9O15
  5. Crystal structure of poly[bis(1-methyl-[4,4′-bipyridin]-1-ium-κN)-tetrakis(μ3-sulfato-κ3O:O′:O′′)trizinc(II)], C22H22Zn3N4O16S4
  6. Crystal structure of (5Z,10Z)-3,13-dichloro-17,18-dioxo-5,11-diphenyl-8,9,17,18-tetrahydro-7H-dibenzo[e,n][1,4,8,12]tetraazacyclopentadecine-16,19-diido-κ4N,N′,N′′,N′′′)copper(II), C31H22N4O2Cl2Cu
  7. Crystal structure of bis{5-methoxy-2-(((2-oxo-2H-chromen-6-yl)imino)methyl)phenolato-κ2N,O}zinc(II), C34H24N2O8Zn
  8. Crystal structure of 2,2′-((((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(azanylylidene))bis(methanylylidene))diphenolato-κ2N4O)nickel(II), C28H22N2O4Ni
  9. Crystal structure of 1,1′-((1E,1′E)-(((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(azanylylidene))bis(methanylylidene))bis(naphthalen-2-olato)cobalt(II), C36H26N2O4Co
  10. Crystal structure of camptothecin, C20H16N2O4
  11. Crystal structure of (2-(chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylato–κ2O,O′)(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N′′,N′′′)nickel(II) perchlorate monohydrate, Ni(C16H36N4)(C12H12O4Cl)ClO4⋅H2O
  12. Crystal structure of 3-(2-chloro-6-methoxyquinolin-3-yl)-5-phenylisoxazole (C19H13ClN2O2)
  13. Crystal structure of tetrakis(μ2-acetato-κ2O:O′)-bis{[(E)-2,6-diisopropyl-N-(pyridin-3-ylmethylene)aniline]copper (II)}, C44H56Cu2N4O8
  14. Crystal structure of diethyl 2-(2-chlorophenyl)-1,3-dioxane-5,5-dicarboxylate, C16H19Cl1O6
  15. Crystal structure of (μ2-2,2′-bipyridine-3,3′-dicarboxylato)-bis(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane)-di-nickel(II) perchlorate N,N′-dimethylformamide solvate, C50H92Cl2N12Ni2O14
  16. Crystal structure of catena-poly[triaqua(μ2-1,2-bis(4-pyridyl)ethane-κ2N:N′)-(1,2-bis(4-pyridyl)ethane-κN)nickel(II)] 2-aminonicotinate nitrate – 1,2-bis(4-pyridyl)ethane – water (2/1/8), C36H44N8NiO12
  17. Hydrothermal synthesis and crystal structure of poly[bis(μ2-3-(3,5-dicarboxyphenoxy)phthalato-κ3O,O′:O′′)-(μ2-1,2-di(pyridin-4-yl)ethane-κ2N:N′)copper(II)], C22H14CuNO9
  18. Crystal structure of catena-poly[aqua-(methanol-κO)-bis(μ2-4-(pyridin-4-yl)benzoato-κ2N:O)-bis(triphenylphospine-κP)disilver(I)], C61H52Ag2N2O6P2
  19. The crystal structure of 6-(4-bromobenzyl)-1,3,5-trimethyl-7-phenyl-1,5-dihydro-2H-pyrrolo[3,2-d]pyrimidine-2,4(3H)-dione, C22H20BrN3O2
  20. Synthesis and crystal structure of catena-poly[bis(2-(2-((2,6-dichlorophenyl)amino)phenyl)acetato-κO2O′,O′′)-(μ2-1,4-di(pyridin-4-yl)benzene-κ2N:N′)zinc(II)], C44H32N4ZnCl4O4
  21. Crystal structure of diaqua-bis[N-phenyl-2-(quinolin-8-yloxy)acetamide-κ3-N,O,O′]-nitrato(κ2O,O′)-cerium(III) dinitrate - acetone (1/2), C40H44N7O17Ce
  22. Crystal structure of the 2D coordination polymer poly[aqua(μ2-2,2′-(1,2-phenylene)diacetato-κ3O,O′:O′)-(μ2-4,4′-bis((1H-1,2,4-triazol-1-yl)methyl)-1,1′-biphenyl-κ2N:N′)cobalt(II)], C28H26CoN6O5
  23. Crystal structure of (dimethylformamide-κO)(perchlorato-κ2O,O′){μ2-6,6′-((1,2-phenylenebis(azanylylidene))bis(methanylylidene))bis(4-bromo-2-methoxyphenolate)-κ8N,N′,O:O,O′:O′,O′′,O′′′}sodium(I)nickel(II), C25H23Br2ClN3NaNiO9
  24. The crystal structure of catena-poly[bis((4-aminophenyl)sulfonyl)(pyrimidin-2-yl)amido-κ2N,N′)-bis(μ2-4,4′-bipyridine-N,N′2N:N′)zinc(II) – methanol (1/2), C32H34N10O6S2Zn
  25. Synthesis and crystal structure poly[aqua(μ3-2-(((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)ammonio)acetate-κ4O,O′:O′′:O′′′) sodium] monohydrate, C18H18NNaO11S
  26. Crystal structure of methyl 4′-amino-3′,5′-diisopropyl-[1,1′-biphenyl]-4-carboxylate, C20H25NO2
  27. Crystal structure of (η6-1-isopropyl-4-methyl benzene)-(N-(2,5-dichlorophenyl)-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) perchlorate, C22H22Cl4N2O4Ru
  28. Crystal structure of 2-(2-(1-Chlorocyclopropyl)-3-(2-chlorophenyl)-2-hydroxypropyl)-1H-1,2,4-triazole-3(2H)-thione, C14H15Cl2N3OS
  29. Crystal structure of methyl 4′-amino-3′,5′-dimethyl-[1,1′-biphenyl]-4-carboxylate, C16H17NO2
  30. The crystal structure of 1-(5-ferrocenyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pentan-1-on, C19H19F3FeN2O
  31. The crystal structure of (3S,12R,20R,24S)-3,12-diacetyl-20,24-epoxy-dammarane-3,12,25-triol acetone solvate, C34H56O6
  32. Crystal structure of methyl 10-(pyridin-4-yl)-anthracene-9-carboxylate, C21H15NO2
  33. Crystal structure of catena-poly[diaqua-bis(di(N2,N6-dihydroxypyridine-2,6-dicarboxamide))potassium(I)]tetrahydrate, C14H25N6O14K
  34. Crystal structure of poly{[μ2-(E)-1,4-bis(1H-benzo[d]imidazol-1-yl)but-2-ene-κ2N:N′][μ3–cyclohexane-1,4-dicarboxylato-κ4O,O′:O′′:O′′′]cadmium(II)}, C26H26CdN4O4
  35. Crystal structure of poly[aqua(μ3-[2,2′-bipyridine]-3,3′-dicarboxylato-κ4N,N′:O:O′)zinc(II)] – dimethylformamide (1/1), C15H15N3O6Zn
  36. The crystal structure of poly[tetraaqua-tris(μ2-2,6-di(1H-imidazol-1-yl)naphthalene-κ2N:N′)-bis(thiophene-2,5-dicarboxylato-κ1O)]dicobalt(II), C30H24CoN6O6S
  37. Crystal structure of (S)-1-(5-(anthracen-9-yl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl)propan-1-one, C26H22N2O
  38. Crystal structure of 5-methyl-3,3-diphenyl-1-tosyl-1,2,3,4-tetrahydropyridine, C25H25NO2S
  39. Synthesis and crystal structure of μ-[1,1′-di(mesitylphosphanido)ferrocene]bis[η5-cyclopentadienylnickel(II)] tetrahydrofurane solvate, C42H48FeNi2OP2
  40. Synthesis and crystal structure of (E)-1-(4-(((E)-5-chloro-2-hydroxybenzylidene)amino)phenyl)ethan-1-one O-methyl oxime, C16H15ClN2O2
  41. Crystal structure of bis(1-(phenylsulfonyl)-2-(1-(pyrazin-2-yl)ethylidene)hydrazin-1-ido-κ3N,N′,O)nickel(II), C24H22N8O4S2Ni
  42. Crystal Structure of bis(1-(phenylsulfonyl)-2-(1-(pyrazin-2-yl)ethylidene)hydrazin-1-ido-κ3N,N′,O)copper(II), C24H22N8O4S2Cu
  43. Synthesis and crystal structure of poly[aqua{μ3-(1S,2S)-1-((7-hydroxy-3-(4-hydroxy-3-sulfonatophenyl)-4-oxo-4H-chromen-8-yl)methyl)pyrrolidin-1-ium-2-carboxylato-κ4O,O′:O′′:O′′′}sodium(I)] monohydrate, C21H22NNaO11S
  44. Halogen bonds in the crystal structure of 1,4-diiodotetrafluorobenzene–1,2-bis(4-pyridyl)propane (1/1), C19H14F4I2N2
  45. Crystal structure of bis(μ-N-i-propyl-N-n-propyldithiocarbamato-κ2S:S′) bis(N-i-propyl-N-n-propyldithiocarbamato-κ2S,S′)dizinc(II), C28H56N4S8Zn2
  46. Crystal structure of bis(μ-N-i-propyl-N-n-propyldithiocarbamato-κ3S,S′:S)bis(N-i-propyl-N-n-propyldithiocarbamato-κ2S,S′)dicadmium(II), C28H56Cd2N4S8
  47. Crystal structure of bis(μ2-di-n-butyldithiocarbamato-κ3S,S′:S3S:S:S′)-hexacarbonyl-di-rhenium(I), C24H36N2O6Re2
  48. Crystal structure of 7-(4-methylphenyl)imidazo[1,2-a][1,3,5]triazin-4-amine, C12H11N5
  49. Crystal structure of the co-crystal O-isopropyl phenylcarbamothioate – 4,4′-bipyridine (2/1), C15H17N2OS
  50. Crystal structure of the coordination polymer catena-poly[chlorido-{μ2-2-(((3,5-dimethyl-1H-pyrazol-1-yl)methyl)amino)-3-hydroxybutanoato-κ4N,N,O:O′}copper(II)], C11H16ClCuN2O3
  51. Synthesis and crystal structure of bis(μ2-acetato-κ2O:O′)-di(ethanol)-bis{μ2-5-(N,N′-diethylamine)-5′-methoxyl-2,2′-[ethylenediyldioxybis(nitrilomethylidyne)]diphenolato-κ6O:O,N,N,O′:O′}trinickel(II) – ethanol – acetonitrile (1/2/2), C58H86Ni3N8O18
  52. Crystal structure of the bis((E)-O-ethyl-N-phenylthiocarbamate) – 4,4′-bipyridine co-crystal (2/1), C28H30N4O2S2
  53. Crystal structure of the (E)-O-methyl-N-phenyl-thiocarbamate – 4,4′-bipyridine (1/1), C18H17N3OS
  54. Crystal structure of bis(μ2-diethyldithiocarbamato-κ3S,S′:S′)-bis(tricyclohexylphosphane-κP)dicopper(I), C46H86Cu2N2P2S4
  55. Crystal structure of N-(3-chlorophenyl)ethoxycarbothioamide, C9H10ClNOS
  56. Crystal structure of bis(μ2-pyrrolidine-1-carbodithioato-κ3S,S′:S;κ3S:S:S′)-bis(tricyclohexylphosphane-P)-di-copper(I), C46H82Cu2N2P2S4
  57. Crystal structure of N-(2-chlorophenyl)methoxycarbothioamide, C8H8ClNOS
  58. Crystal structure of chlorido-methanol-(N-(2-(oxy)-3-methoxybenzylidene)pyridine-4-carbohydrazonato-κ3O,N,O′)-(4-methylphenyl)methyl-tin(IV), C23H24ClN3O4Sn
  59. Crystal structure of N-(3-chlorophenyl)(propan-2-yloxy)carbothioamide, C10H12ClNOS
  60. Crystal structure of 1-[(Z)-[4-(4-methoxyphenyl)butan-2-ylidene]amino]-3-phenylurea, C18H21N3O2
  61. A triclinic polymorph of bis(μ-N,N-bis(2-hydroxyethyl)dithiocarbamato-κ3S,S′:S′) bis(N,N-bis(2-hydroxyethyl)dithiocarbamato-κ2S:S′)zinc(II), C20H40N4O8S8Zn2
Heruntergeladen am 8.9.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2017-0321/html
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