Home Physical Sciences The crystal structure of N,N-dimethyl-2,6-di-p-tolylpyrimidin-4-amine, C20H21N3
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The crystal structure of N,N-dimethyl-2,6-di-p-tolylpyrimidin-4-amine, C20H21N3

  • Zhi-Mao Zhang and Lian-Hui Chen EMAIL logo
Published/Copyright: September 16, 2017

Abstract

C20H21N3, Orthorhombic, Pbca, a = 12.2422(16) Å, b = 7.1996(10) Å, c = 39.037(5) Å, V = 3440.6(8) Å3, Z = 8, Rgt(F) = 0.0686, wRref(F2) = 0.1723, T = 293(2) K.

CCDC no.:: 1571314

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Prismatic, colorless
Size:0.20 × 0.17 × 0.11 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.07 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
2θmax, completeness:25°, >99%
N(hkl)measured, N(hkl)unique, Rint:17561, 3040, 0.043
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2585
N(param)refined:213
Programs:Bruker programs [1], SHELX [2, 3]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
N10.68796(14)0.0993(3)0.09334(4)0.0463(5)
N20.57627(15)0.0463(3)0.14241(4)0.0468(5)
N30.87524(15)0.0998(3)0.09666(5)0.0539(5)
C10.77849(17)0.0797(3)0.11265(5)0.0428(5)
C20.76975(17)0.0410(3)0.14778(5)0.0436(5)
H20.83170.02540.16130.052*
C30.66729(17)0.0267(3)0.16157(5)0.0426(5)
C40.59221(17)0.0811(3)0.10917(5)0.0430(5)
C50.49294(18)0.1011(3)0.08759(6)0.0461(5)
C60.5009(2)0.1356(4)0.05278(6)0.0560(6)
H60.56940.14640.04270.067*
C70.4081(2)0.1541(4)0.03299(7)0.0626(7)
H70.41560.17690.00970.075*
C80.3051(2)0.1399(4)0.04665(7)0.0597(7)
C90.2981(2)0.1057(4)0.08149(8)0.0695(8)
H90.22950.09520.09160.083*
C100.38968(19)0.0867(4)0.10160(6)0.0618(7)
H100.38200.06390.12490.074*
C110.2041(2)0.1577(5)0.02488(8)0.0807(9)
H11A0.22460.19050.00190.121*
H11B0.15760.25250.03420.121*
H11C0.16570.04150.02460.121*
C120.65013(17)−0.0134(3)0.19860(5)0.0437(5)
C130.55324(19)−0.0930(3)0.20983(6)0.0520(6)
H130.4988−0.12090.19400.062*
C140.5363(2)−0.1316(4)0.24406(6)0.0600(7)
H140.4710−0.18630.25090.072*
C150.6147(2)−0.0905(4)0.26836(6)0.0605(7)
C160.7109(2)−0.0103(4)0.25720(6)0.0602(7)
H160.76470.01930.27310.072*
C170.7287(2)0.0268(3)0.22295(6)0.0537(6)
H170.79450.07970.21610.064*
C180.5960(3)−0.1290(5)0.30602(7)0.0947(11)
H18A0.5935−0.01380.31830.142*
H18B0.6546−0.20410.31470.142*
H18C0.5280−0.19370.30890.142*
C190.8801(2)0.1354(4)0.06020(6)0.0664(8)
H19A0.87150.02070.04800.100*
H19B0.94940.18980.05460.100*
H19C0.82260.21930.05390.100*
C200.97742(19)0.0842(4)0.11494(7)0.0617(7)
H20A0.97550.16250.13480.093*
H20B1.03630.12220.10030.093*
H20C0.9884−0.04240.12190.093*

Source of material

The title product was prepared by the modified method reported by Wu’s group [5]. Under an argon atmosphere, KOtBu (224.4 mg, 2.0 mmol), DMAc (2.0 mL) and 4-methylbenzonitrile (393 mg, 3.0 mmol) were successively added into a Schlenk tube. Then the mixture was stirred vigorously at 110°C for 16 h. The reaction mixture was cooled to room temperature, diluted with ethyl acetate (30 mL), and washed with saturated brine. The organic phases were dried over anhydrous Na2SO4, filtered, and then the solvent was removed under reduced pressure. The residue was purified by flash column chromatography (SiO2) to give the title product in 87% yield as a white solid. Crystals were grown in a mixture of ethyl acetate and petroleum ether.

Experimental details

All hydrogen atoms attached to C atoms were introduced using the HFIX command in the SHELXL program [2, 3] . The C–H distances in CH3 were restrained to 0.96 Å with Uiso values to be 1.5Ueq(C). Vinylic and aromatic C–H distances were restrained to 0.93 Å with Uiso values to be 1.2Ueq(C) [4].

Discussion

Pyrimidines are frequently found in natural products. Some of them show biological and pharmaceutical activities or can be used as functional materials [6], [7], [8], [9], [10], [11].

The bond lengths and angles derived from the title structure are within normal ranges. All ring moieties are almost all in one plane. This study is part of our attempt to synthesize new pyrimidine derivatives with potential applications in medicine and advanced materials.

Acknowledgement

I acknowledge the financial support from Natural Science Foundation of Zhejiang Province (No. LY13B020009) for the publication fee.

References

Bruker AXS Inc.: SADABS, Version 2.03, SAINT, Version 6.02, Bruker AXS Inc. Madison, Winsonsin, USA (2002).Search in Google Scholar

Sheldrick, G. M.: SHELXT-integrated space-group and crystal-structure determination. Acta Crystallogr. 71 (2015) 3–8.10.1107/S2053273314026370Search in Google Scholar PubMed PubMed Central

Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. Sect. C Struct. Chem. 71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

Spek, A. L.: Structure validation in chemical crystallography. Acta Crystallogr. D65 (2009) 148–155.10.1107/S090744490804362XSearch in Google Scholar PubMed PubMed Central

Feng, J.-B.; Wu, X.-F.: KOtBu-promoted synthesis of multi-substituted 4-aminopyridines from benzonitriles and aliphatic amides. RSC Adv. 5 (2015) 106444–106447.10.1039/C5RA24292DSearch in Google Scholar

Kulkarni, R. R.; Kim, J. H.; Kim, Y. H.; Oh, Sangtaek; Na, M. K.: Isolation and structure determination of an imidazo-pyridine, 5-chlorocavernicolin, maleimide oximes and nucleosides from a marine sponge extract. Nat. Prod. Sci. 21 (2015) 25–29.10.20307/nps.2015.21.4.293Search in Google Scholar

Chen, L.-H.; Yang, M.-J.; Guan, Y.-M.; Zhu, W.-F.; Huang, H.-L.: Identification of nucleosides and nucleobases from cultured Cordyceps militaris. Nat. Prod. Commun. 9 (2014) 637–638.10.1177/1934578X1400900511Search in Google Scholar

Yang, Z.-H.; Fang, Y.-Y.; Park, H.: Synthesis and biological evaluation of pyrimidine derivatives with diverse azabicyclic ether/amine as novel GPR119 agonist. Bioorg. Med. Chem. Lett. 27 (2017) 2525–2519.10.1016/j.bmcl.2017.03.092Search in Google Scholar PubMed

Zhao, Y.-M.; Zhang, J.-K.; Zhuang, R.-X.; He, R.-Y.; Xi, J.-J.; Pan, X.-W.; Shao, Y.-D.; Pan, J.-M.; Sun, J.-J.; Cai, Z.-B.; Liu, S.-R.; Huang, W.-W.; Lv, X.-Q.: Synthesis and evaluation of a series of pyridine and pyrimidine derivatives as type II c-Met inhibitors. Bioorg. Med. Chem. 25 (2017) 3195–3205.10.1016/j.bmc.2017.04.003Search in Google Scholar PubMed

Ganesan, P.; Ranganathan, R.; Chi, Y.; Liu, X.-K.; Lee, C.-S.; Liu, S.-H.; Lee, G.-H.; Lin, T.-C.; Chen, Y.-T.; Chou, P.-T.: Functional pyrimidine-based thermally activated delay fluorescence emitters: photophysics, mechanochromism, and fabrication of organic light-emitting diodes. Chem. Eur. J. 23 (2017) 2858–2866.10.1002/chem.201604883Search in Google Scholar PubMed

Wu, K.-L.; Zhang, T.; Zhan, L.-S.; Zhong, C.; Gong, S.-L.; Jiang, N.; Lu, Z.-H.; Yang, C.-L.: Optimizing optoelectronic properties of pyrimidine-based TADF emitters by changing the substituent for organic light-emitting diodes with external quantum efficiency close to 25% and slow efficiency roll-off. Chem. Eur. J. 22 (2016) 10860–10866.10.1002/chem.201601686Search in Google Scholar PubMed

Received: 2017-6-13
Accepted: 2017-8-29
Published Online: 2017-9-16
Published in Print: 2017-11-27

©2017 Zhi-Mao Zhang et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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