Home Physical Sciences Crystal structure of 1-methyl-1,4-diazabicyclo[2.2.2]octan-1-ium poly[aqua-bis(μ2-perchlorato-κ3O,O′:O′′)sodium], C7H17Cl2N2NaO9
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Crystal structure of 1-methyl-1,4-diazabicyclo[2.2.2]octan-1-ium poly[aqua-bis(μ2-perchlorato-κ3O,O′:O′′)sodium], C7H17Cl2N2NaO9

  • Mei-Ying Liu EMAIL logo
Published/Copyright: September 16, 2017

Abstract

C7H17Cl2N2NaO9, orthorhombic, Pbca (no. 61), a = 13.907(3) Å, b = 10.927(2) Å, c = 19.194(4) Å, V = 2916.8(10) Å3, Z = 8, Rgt(F) = 0.0472, wRref(F2) = 0.1129, T = 298 K.

CCDC no.: 1448801

The asymmetric unit of the title crystal structure is shown in upper part of the figure; the anionic polymeric substructure is shown in the lower part of the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless block
Size:0.2 × 0.2 × 0.2 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:5.2 cm−1
Diffractometer, scan mode:Bruker P4, ω scans
2θmax, completeness:55°, >99%
N(hkl)measured, N(hkl)unique, Rint:28451, 3337, 0.058
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2635
N(param)refined:198
Programs:SHELX [1], Bruker programs [2]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.0076(2)0.4950(3)0.10930(17)0.0493(7)
H1A−0.02940.48380.06690.059*
H1B−0.00770.57510.12810.059*
C2−0.0204(2)0.3969(3)0.16200(19)0.0558(8)
H2A−0.04410.43510.20420.067*
H2B−0.07120.34610.14300.067*
C30.1327(2)0.3692(2)0.06316(14)0.0471(7)
H3A0.20110.36420.05370.057*
H3B0.09870.35950.01940.057*
C40.1040(3)0.2667(3)0.11264(15)0.0574(9)
H4A0.05550.21560.09090.069*
H4B0.15950.21600.12290.069*
C50.1643(2)0.5035(2)0.15773(14)0.0438(7)
H5A0.14900.58200.17850.053*
H5B0.23260.50220.14760.053*
C60.1404(2)0.4013(3)0.20940(16)0.0545(8)
H6A0.19780.35430.21970.065*
H6B0.11680.43630.25260.065*
C70.0387(2)0.2200(3)0.22776(15)0.0478(7)
H7A−0.01060.17010.20730.072*
H7B0.01520.25520.27030.072*
H7C0.09410.17060.23740.072*
Cl10.43911(4)0.39159(5)0.08792(3)0.03395(17)
Cl20.74815(4)0.65128(5)0.14705(3)0.03434(17)
H9A0.8320(16)0.393(2)−0.0246(12)0.041*
H9B0.8229(17)0.2957(18)0.0163(14)0.041*
N10.11021(16)0.48907(19)0.09296(11)0.0355(5)
N20.06545(14)0.31983(18)0.17837(10)0.0294(4)
Na10.66160(7)0.42592(10)0.05911(6)0.0422(3)
O10.37664(15)0.4766(2)0.05404(11)0.0556(6)
O20.48755(18)0.3184(2)0.03730(13)0.0709(7)
O30.51097(15)0.4566(2)0.12622(12)0.0607(6)
O40.38464(17)0.3165(2)0.13335(14)0.0742(7)
O50.67432(17)0.6467(2)0.09479(12)0.0668(7)
O60.82413(14)0.7295(2)0.12514(12)0.0559(6)
O70.78299(19)0.5314(2)0.15887(17)0.0868(9)
O80.70694(18)0.6975(3)0.20912(13)0.0781(8)
O90.79176(17)0.3566(2)0.00121(13)0.0614(6)

Source of materials

1-Methyl-1,4-diazabicyclo[2.2.2]octane iodide, was synthesized by the reaction of 1,4-diazabicyclo[2.2.2]octane (2.8 g, 0.025 mol) and methyl iodide (2.86 g, 0.020 mol) in 100 mL of chloroform. Safety Note: The reaction is a strongly exothermic, which may result in a potential explosion. Thus the methyl iodide chloroform solution must be added very slowly. With stirring, a white precipitates formed at once. Then the mixture was stirred for 24 h at room temperature, and then the solids were filtered off and washed with 10 mL chloroform. 1-Methyl-1,4-diazabicyclo[2.2.2]octane iodide was dissolved in 20 mL ethanol and the solution of NaClO4⋅H2O in ethanol was subsequently added with stirring, while a white precipitate formed. The suspension was filtered, and the resulting solid was washed with ethanol and dried over P4O10 at room temperature. Colorless crystals were obtained from a solution of 1 g in 25 mL methanol by slow evaporation after 2 weeks, with a yield of 75%.

Experimental details

The hydrogen atoms were placed on calculated positions (AFIX 23 and 137) with the help of the SHELX program [1].

Comment

1,4-Diazabicyclo[2.2.2]octane (dabco) [3, 4] and its organic-inorganic salts [5] show reversible phase transition and switchable dielectric transition, offering a way to design these functional material. In the course of studies of dabco derivatives, we synthesized the title compound and determined its crystal structure.

The Na(1) atom is seven-coordinated to seven oxygen atoms from four perchlorate anions and one coordinated water molecule. The bond lengths of Na–O are in the range of 2.25–3.05 Å. Among them, the bond lengths of Na–O (ClO4) = 2.48–3.05 Å and Na–O (water) = 2.256 Å, reflect the differences of the two types of Na–O coordination bonds. The ClO4 anions as bidentate ligands provide three coordination sites to link adjacent sodium atom, yielding an infinite 2D host anionic framework in the ab plane. The anionic host framework and the guest cations are connected through hydrogen bonds forming 2D network along c axis. 1-Methyl-DABCO cations form H-bonding interactions (O9⋯-N1# = 2.823(3) Å, #: x, 1/2 − y, 1/2 + z) with the water molecules from the adjacent anionic layers. The water molecule coordinating the Na atom, also forms an intramolecular hydrogen bond (O9⋯-O5# = 2.952(3) Å, #: 1/2 − x, −1/2 + y, z) with an oxygen atom from a perchlorate anion from a neighboring unit. These weak hydrogen bond in the solid state impose the 1-methyl-DABCO cations to appear perfectly ordered.

Acknowledgement

The author would thank the Southeast University for funding of this research.

References

Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

Bruker. APEX2, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA, (2009).Search in Google Scholar

Han, X.-B.; Hu, P.; Zhang, W.: 1,4-Diazabicyclo[2.2.2]octane-based disalts showing non-centrosymmetric structures and phase transition behaviors. CrystEngComm 18 (2016) 1563–1569.10.1039/C5CE02066BSearch in Google Scholar

Han, X.-B.; Hu, P.; Shi, C.; Zhang, W.: Structural phase transitions and dielectric transitions in a 1,4-diazabicyclo[2.2.2]octane (dabco) based organic crystal. J. Mol. Struct. 1127 (2017) 372–376.10.1016/j.molstruc.2016.07.113Search in Google Scholar

Han, X.-B.; Xiao, J.-M.: Water motion-controlled reversible phase transition and de/absorption-controlled reversible phase transformation in the hydrate crystal (BEDABCO)ClO4⋅H2O and its analogs. CrystEngComm 18 (2016) 6195–6199.10.1039/C6CE00854BSearch in Google Scholar

Received: 2017-3-30
Accepted: 2017-8-16
Published Online: 2017-9-16
Published in Print: 2017-11-27

©2017 Mei-Ying Liu, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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