Home Physical Sciences Crystal structure of trimethyammonium 2,6-dicarboxyisonicotinate monohydrate, C11H16N2O7
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Crystal structure of trimethyammonium 2,6-dicarboxyisonicotinate monohydrate, C11H16N2O7

  • Huahui Zeng EMAIL logo and Qianjin Shen
Published/Copyright: October 20, 2017

Abstract

C11H16N2O7, orthorhombic, Pnma (no. 62), a = 13.753(3) Å, b = 6.9471(15) Å, c = 13.797(3) Å, V = 1318.2(5) Å3, Z = 4, Rgt(F) = 0.0386, wRref(F2) = 0.1650, T = 296 K.

CCDC no.:: 1577314

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Block, colorless
Size:0.310 × 0.20 × 0.09 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.12 mm−1
Diffractometer, scan mode:CCD area detector, φ and ω-scans
2θmax, completeness:25°, 92.5%
N(hkl)measured, N(hkl)unique, Rint:2337, 1176, 0.015
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 952
N(param)refined:129
Programs:SHELX [1]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O1−0.00104(13)0.7500−0.24357(14)0.0512(6)
O1W0.16822(18)0.25000.1588(2)0.1134(16)
H1WA0.2249(19)0.25000.184(4)0.170*
H1WBa0.171(4)0.204(12)0.101(2)0.170*
H1−0.050(2)0.7500−0.205(2)0.077*
O20.15759(15)0.7500−0.24728(16)0.0771(9)
O3−0.17174(12)0.75000.04999(15)0.0445(6)
O4−0.09335(12)0.75000.19156(16)0.0584(7)
O50.25857(12)0.75000.20436(14)0.0527(7)
O60.34730(12)0.75000.06927(15)0.0526(6)
N10.00062(13)0.7500−0.04626(15)0.0293(5)
N20.13312(14)0.75000.42134(15)0.0358(6)
H20.19640.75000.42640.043*
C10.08627(15)0.7500−0.0920(2)0.0311(6)
C20.08378(17)0.7500−0.2003(2)0.0427(7)
C30.17511(16)0.7500−0.04319(19)0.0328(6)
H3A0.23340.7500−0.07740.039*
C40.17479(16)0.75000.05624(19)0.0310(6)
C50.08616(14)0.75000.1041(2)0.0319(6)
H5A0.08380.75000.17140.038*
H50.3125(16)0.75000.237(2)0.079*
C60.00097(15)0.75000.04994(19)0.0286(6)
C7−0.09705(15)0.75000.1010(2)0.0333(6)
C80.26997(16)0.75000.1110(2)0.0354(6)
C90.10307(14)0.5741(3)0.36902(16)0.0470(6)
H9A0.13770.56600.30870.070*
H9B0.03450.57900.35650.070*
H9C0.11760.46310.40780.070*
C110.0954(2)0.75000.5219(2)0.0535(9)
H11A0.11780.63730.55530.064*
H11B0.02570.75000.52010.064*
  1. aOccupancy: 0.5.

Source of material

Pyridine-2,4,6-tricarboxylic acid was synthesized with 2,4,6-trimethyl pyridine (99%, A. R.), which is commercially afforded by the Alfa Aesar company, following the procedures in the literature [2]. The acid was dissolved in small amount of trimethylamine (30% aqueous solution) with the molar ratio of 1:3. After stirring for half an hour, the clean solution was set aside to yield colorless crystals after about 7 days.

Experimental details

Carbon-bound hydrogen atoms were placed in calculated positions and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2Ueq(C). Uiso(H) = 1.5Ueq(C).

Discussion

Pyridine-2,4,6-tricarboxylic acid is in a perfect triangular configuration with three carboxyl groups and one nitrogen atom located in the six-membered ring. Obviously, the acid is a good hydrogen bond donor and acceptor, which is very similar with 1,3,5-benzenetricarboxylic acid except the only nitrogen atom of the ring. Searching in CSD database [3], it can be found that pyridine-2,4,6-tricarboxylic acid can interact with tetraalkylammonium cations to form varied crystal structures [4]. However, the crystal structure of pyridine-2,4,6-tricarboxylic acid and trialkylammonium has not been reported before. Herein the crystal structure of the title compound is described to enrich the related crystal structures of pyridine-2,4,6-tricarboxylic acid.

In the asymmetric unit of the title compound, the anion and the trimethylammonium cation are both as well as the water molecule located on mirror planes. One proton of pyridine-2,4,6-tricarboxylic acid was deprotonated and accepted by trimethylamine to generate the related cation. With the help of the water molecule, the anion connects with each other to form the hydrogen-bonded layers by O—H⋯O and O—H⋯N interactions. The cation is contained between the aforementioned layers to construct the final stable crystal structure with the existence of N—H⋯O hydrogen bonds and weak C—H⋯O contacts. Bond lengths and angles, espcially those of the anion, are in the expected ranges [5].

Acknowledgements

This work was financially supported by Henan provincial key scientific research projects 17A350009, the Provincial Scientific Research Fund (2014KYYWF-ZZCX3-04) and the Doctoral Research Fund of Henan Chinese Medicine (BSJJ2015-02).

References

Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar

Syper, L.; Kloc, K.: Synthesis of ubiquinone and menaquinone analogues by oxidative demethylation of alkenylhydroquinone ethers with argentic oxide or ceric ammonium nitrat. Tetrahedron 36 (1980) 123–129.10.1016/0040-4020(80)85034-4Search in Google Scholar

Allen, F. H.: The cambridge structural database: a quarter of a million crystal structures and rising. Acta Crystallogr. B 58 (2002) 380–388.10.1107/S0108768102003890Search in Google Scholar PubMed

Yang, Y. Y.; Li, Q.: Synthesis and crystal structures of 2, 4,6-pyridine-tricarboxylic anions/guanidinium and tetraalkylammonium inclusion compounds. J. Incl. Phenom. Macrocycl. Chem. 72 (2012) 197–205.10.1007/s10847-011-9965-ySearch in Google Scholar

Xi-Gang Du, X.-G.; Wang, C. W.: Crystal structure of 5-(4-carboxyphenoxy)nicotinic acid, C13H9NO5. Z. Kristallogr. NCS 231 (2016) 93–95.10.1515/ncrs-2015-0048Search in Google Scholar

Received: 2017-6-18
Accepted: 2017-9-29
Published Online: 2017-10-20
Published in Print: 2017-11-27

©2017 Huahui Zeng et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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