Home The crystal structure of (S)-2-benzylsuccinic acid, C11H12O4
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The crystal structure of (S)-2-benzylsuccinic acid, C11H12O4

  • Yun-Peng Zhang and Bing Li EMAIL logo
Published/Copyright: September 13, 2017

Abstract

C11H12O4, orthorhombic, P212121 (no. 19), a = 9.960(2) Å, b = 9.960(2) Å, c = 10.967(2) Å, V = 1083.9(4) Å3, Z = 4, Rgt(F) = 0.0505, wRref(F2) = 0.1861, T = 293(2) K.

CCDC no.:: 1542057

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Colourless platelet
Size:0.40 × 0.40 × 0.19 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.0 cm−1
Diffractometer, scan mode:Rigaku R-AXIS RAPID, ω scans
2θmax, completeness:54.8°, >99%
N(hkl)measured, N(hkl)unique, Rint:10615, 2468, 0.040
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1466
N(param)refined:137
Programs:Rigaku programs [1], SHELX [2]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O10.4610(3)0.3699(3)0.3337(2)0.0789(9)
H1A0.41540.30200.34250.118*
O20.4629(3)0.3607(2)0.5359(2)0.0642(7)
O30.8093(3)0.3531(3)0.6540(2)0.0717(8)
O40.7878(2)0.3354(2)0.4531(2)0.0644(7)
H4A0.84340.27550.46310.097*
C10.4999(3)0.4121(3)0.4377(3)0.0514(7)
C20.5946(3)0.5294(3)0.4387(4)0.0568(8)
H2A0.54260.61180.44090.068*
H2B0.64670.52920.36380.068*
C30.6909(3)0.5270(3)0.5471(3)0.0511(7)
H3A0.63810.53770.62200.061*
C40.7670(3)0.3959(3)0.5545(3)0.0532(7)
C50.7958(3)0.6421(3)0.5406(4)0.0609(9)
H5A0.85990.63200.60680.073*
H5B0.84510.63550.46440.073*
C60.7307(3)0.7790(3)0.5490(3)0.0523(8)
C70.6860(4)0.8261(4)0.6591(3)0.0697(11)
H7A0.69560.77310.72830.084*
C80.6263(5)0.9523(4)0.6689(4)0.0788(12)
H8A0.59480.98260.74380.095*
C90.6144(4)1.0317(3)0.5671(5)0.0744(11)
H9A0.57621.11670.57310.089*
C100.6587(4)0.9857(4)0.4576(5)0.0763(11)
H10A0.65041.03930.38860.092*
C110.7159(4)0.8596(3)0.4482(4)0.0648(9)
H11A0.74490.82890.37250.078*

Source of materials

The title compound was prepared from L-phenylalanine by diazotization, esterification, condensation, hydrolyzation and decarboxylation. It was recrystallized from water to give colorless crystals for single-crystal X-ray diffraction.

Experimental details

All H atoms were positioned geometrically and treated as riding, with C—H bond lengths constrained to 0.93 Å for phenyl hydrogen atoms, 0.97 Å for methylene H atoms and 0.97 Å for methyne H atoms with Uiso(H) = 1.2Ueq(C). The O—H bond length was constrained to 0.82 Å and the Uiso(H) was set to 1.5Ueq(O). The presence of the S enantiomer was concluded from the synthesis.

Comment

(S)-2-benzylsuccinic acid is a valuable compound, which was employed as a key intermediate for hypoglycemic KAD-1229 by means of asymmetric alkylation of N-acylsultam [3, 4] . (S)-2-benzylsuccinic acid can be synthesized by various procedures. The preparation of (S)-2-benzylsuccinic acid from L-phenylalanine is considered to be one of the most clean, efficient and convenient processes [5, 6] .

The asymmetric unit of the title structure contains one independent molecule. All bond lengths and angles of this molecule are in the expected ranges. The molecules are packed in the crystal structure via two intermolecular strong classical hydrogen bonds, O4–H4A⋅⋅⋅O2i and O1–H1A⋅⋅⋅O2ii. The H⋅⋅⋅A distances are 1.80 and 1.87 Å, respectively and the angles are 172 and 174°, respectively. Symmetry codes: (i) x + 1/2, − y + 1/2, − z + 1; (ii) x−1/2, − y + 1/2, − z + 1.

Acknowledgement

We gratefully acknowledge support by Zhejiang Provincial Natural Science Foundation of China (No. LY15B060009) and the Program for key Science and Technology Team of Zhejiang Province (No. 2013TD17).

References

Rigaku: RAPID-AUTO. Rigaku Corporation, Tokyo, Japan (1998).Search in Google Scholar

Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta. Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar

Liu, J.-C.; Yang, Y.-S.; Ji, R.-Y.: A practical and efficient preparation of (S)-2-Benzylsuccinic acid: a key acid synthon of KAD-1229. Synth. Commun. 34 (2004) 2633–2640.10.1081/SCC-200025625Search in Google Scholar

Zhang, L.-D.; Yang, J.: Study on the synthesis of (S)-(-)-benzylsuccinic acid. Chem. Ind. Times 19 (2005) 23–24.Search in Google Scholar

Cohen, S. G.; Milovanovic, A.: Absolute steric course of hydrolysis by α-chymotrypsin. Esters of α-benzylsuccinic, α-methyl-β-phenylpropionic, and α-methylsuccinic acids. J. Am. Chem. Soc. 90 (1968) 3495–3502.10.1021/ja01015a036Search in Google Scholar

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Received: 2017-4-10
Accepted: 2017-8-17
Published Online: 2017-9-13
Published in Print: 2017-11-27

©2017 Bing Li et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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