Startseite Crystal structure of phenyl(2-phenyl-2,3-dihydro-1H-perimidin-2-yl)methanone, C24H18N2O
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Crystal structure of phenyl(2-phenyl-2,3-dihydro-1H-perimidin-2-yl)methanone, C24H18N2O

  • Craig D. Grimmer EMAIL logo
Veröffentlicht/Copyright: 25. Februar 2017

Abstract

C24H18N2O, monoclinic, P21/n (no. 14), a = 5.9227(7) Å, b = 16.462(2) Å, c = 18.150(2) Å, β = 98.372(2)°, V = 1750.8(4) Å3, Z = 4, Rgt(F) = 0.0353, wRref(F2) = 0.0942, T = 100(2) K.

CCDC no.:: 1528291

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow needle
Size:0.20 × 0.10 × 0.05 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.8 cm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
2θmax, completeness:53°, >99%
N(hkl)measured, N(hkl)unique, Rint:63640, 3704, 0.034
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3277
N(param)refined:247
Programs:Bruker programs [1], SHELX [2], OLEX2 [3], [4], publCIF [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O10.03471(14)0.48645(5)0.21651(5)0.0207(2)
N20.55029(16)0.44201(6)0.15019(6)0.0143(2)
C190.38909(19)0.47854(7)0.29437(6)0.0151(2)
C50.2403(2)0.24648(7)0.12042(6)0.0181(2)
N10.18919(16)0.46976(6)0.08326(5)0.0155(2)
H10.06885(16)0.50168(6)0.07585(5)0.0185(2)*
C80.6578(2)0.30623(7)0.19638(7)0.0188(2)
H80.7984(2)0.32563(7)0.22228(7)0.0226(3)*
C90.50445(19)0.35953(7)0.15790(6)0.0152(2)
C10.12935(19)0.38666(7)0.08258(6)0.0154(2)
C3−0.1226(2)0.27446(8)0.04448(7)0.0221(3)
H3−0.2632(2)0.25544(8)0.01822(7)0.0265(3)*
C2−0.0746(2)0.35823(8)0.04514(6)0.0187(2)
H2a−0.1825(2)0.39510(8)0.01984(6)0.0224(3)*
C40.0290(2)0.21959(8)0.08091(7)0.0212(3)
H4−0.0077(2)0.16339(8)0.07965(7)0.0254(3)*
C120.42314(19)0.58393(7)0.13764(6)0.0148(2)
C100.29050(19)0.33105(7)0.12067(6)0.0155(2)
C180.24208(19)0.48786(7)0.22045(6)0.0145(2)
C130.3118(2)0.64663(7)0.16946(7)0.0185(2)
H130.1904(2)0.63435(7)0.19655(7)0.0223(3)*
C60.4038(2)0.19305(7)0.15972(7)0.0213(3)
H60.3738(2)0.13638(7)0.16013(7)0.0256(3)*
C70.6051(2)0.22289(8)0.19713(7)0.0219(3)
H70.7110(2)0.18649(8)0.22407(7)0.0263(3)*
C210.7325(2)0.49885(8)0.38178(7)0.0237(3)
H210.8792(2)0.52274(8)0.39411(7)0.0285(3)*
C140.3769(2)0.72677(8)0.16187(7)0.0230(3)
H140.3004(2)0.76907(8)0.18388(7)0.0276(3)*
C160.6621(2)0.68333(8)0.08849(7)0.0212(3)
H160.7809(2)0.69603(8)0.06041(7)0.0254(3)*
C170.5969(2)0.60292(7)0.09589(7)0.0186(2)
H170.6705(2)0.56083(7)0.07257(7)0.0223(3)*
C150.5536(2)0.74529(8)0.12218(7)0.0217(3)
H150.6004(2)0.80009(8)0.11799(7)0.0260(3)*
C230.4258(3)0.41798(8)0.41673(7)0.0276(3)
H230.3649(3)0.38535(8)0.45228(7)0.0331(4)*
C200.6072(2)0.51182(7)0.31190(7)0.0183(2)
H200.6700(2)0.54336(7)0.27601(7)0.0220(3)*
C240.2979(2)0.43273(7)0.34806(7)0.0205(3)
H240.1474(2)0.41169(7)0.33721(7)0.0246(3)*
C110.35390(19)0.49572(7)0.14733(6)0.0141(2)
C220.6432(2)0.45080(9)0.43381(7)0.0282(3)
H220.7310(2)0.44050(9)0.48097(7)0.0339(4)*
H20.678(3)0.4602(10)0.1758(9)0.025(4)*

Source of material

Benzil (2.10 g; 10.0 mmol) and 1,8-diaminonaphthalene (1.58 g; 10.0 mmol) were dissolved in ethanol (75 mL). Concentrated HCl (aq) (4 drops) was added. The clear solution was heated to reflux for ∼40 h during which a yellow precipitate formed. After cooling to room temperature, the yellow precipitate was removed by suction filtration, washed with ethanol (50 mL) and air-dried for ∼20 h (1.94 g; 55%). The product was recrystallized from ethanol.

Experimental details

All hydrogen atoms were placed in calculated positions and refined using a riding model. Carbon-bound H atoms were fixed at 0.93 Å, with displacement parameters 1.2 times Ueq(C). Nitrogen-bound H atoms were fixed at 0.86 Å, with Uiso(H) set to 1.2Ueq(N).

Comment

Perimidines are an important class of compounds with attractive biological and physical properties [6], [7], [8], [9], [10], [11], [12]. The title compound [13], [14], [15], [16] was prepared by condensation of 1,8-diaminonaphthalene and benzil with acid catalysis. One of the nitrogen atoms (N1) is coplanar with the ten carbon atoms of the naphthylene ring (C1—C10). The second nitrogen atom (N2) is slightly diplaced below this plane by 0.14 Å and the bridging carbon atom (C11) is displaced above this plane by 0.56 Å. The plane of the phenyl ring (C12—C17) intersects with the naphthyl plane (C1—C10) at an angle of 67.9° and the planes described by the atoms N1—C11—N2 and C12—C11—C18 are almost orthogonal with an intersection angle of 89.8°. The crystal architecture is best viewed along the a-axis, exhibiting a head-to-tail arrangement of naphthyl-phenyl layers with interlocking benzoyl rings from the adjacent layer, maintained by a single hydrogen bond, N—H⋯O = C, and multiple weak Ar⋯H, Ar⋯Ar, C = O⋯H—C contacts.

Acknowledgement

The author acknowledges the support of the University of KwaZulu-Natal (Pietermaritzburg) and would like to thank Professor Q. Q. Munro and Dr M. P. Akerman for general advice on matters of crystallography.

References

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Received: 2016-8-8
Accepted: 2017-1-18
Published Online: 2017-2-25
Published in Print: 2017-3-1

©2017 Craig D. Grimmer, published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Artikel in diesem Heft

  1. Cover and Frontmatter
  2. The crystal structure of triphenylphosphineoxide – 2,5-dichloro-3,6-dihydroxycyclohexa-2,5-diene-1,4-dione (2/1), C42H32Cl2O6P2
  3. Crystal structure of poly-[diaqua-[bis(μ2-hydroxy)-bis(μ4-3,4,5,6-tetrachlorophthalato-κ3O,O′:O′; κ2O′′:O′′′)dilanthanum(III)], C8H3Cl4LaO6
  4. Crystal structure of 1,1′-(3,4-diphenylthieno[2,3-b]thiophene-2,5-diyl)bis[1-phenyl-methanone], C32H20O2S2
  5. Crystal structure of 4a-hydroxy-9-(3,5-dibromo-phenyl)-3,4,4a,5,6,7,9,9a-octahydro-2H-xanthene-1,8-dione, C19H18Br2O4
  6. Crystal structure of 5-hydroxy-4,6,9,10-tetramethyl-1-oxo-6-vinyldecahydro-3a,9-propanocyclopenta[8]annulen-8-yl 2-((2-methyl-1-(3-methylbenzamido)propan-2-yl)thio)acetate, C34H49NO5S
  7. Crystal structure of pyridinium bis(naphthalane-2,3-diolato-κ2O,O′)borate monohydrate, C25H20BNO5
  8. Crystal structure of 1,1′-((1E,1′E)-(((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(azanylylidene))bis(methanylylidene))bis(naphthalen-2-olato)nickel(II), C72H52N4O8Ni2
  9. The crystal structure of 3-(2-acetyl-4-butyramido-phenoxy)-2-hydroxy-N-isopropylpropan-1-aminium tetraphenylborate, C42H49BN2O4
  10. Crystal structure of 4-bromobenzyl (Z)-N′-(adamantan-1-yl)-4-phenylpiperazine-1-carbothioimidate, C28H34BrN3S
  11. Crystal structure of poly-[(μ6-benzene-1,2,4,5-tetracarboxylato)-(μ2-1,2-bis(imidazol-1-ylmethyl)benzene)dicobalt(II)], Co2C24H16N4O8
  12. Crystal structure of catena-(bis(μ2-1, 2-bis(imidazole-1-ylmethyl)benzene-κN:N′)-dichlororido-nickel(II)), C28H28Cl2N8Ni
  13. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-hydroxy-3-(4-methoxyphenyl)prop-2-en-1-one, C15H16N2O3
  14. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-hydroxy-3-phenylprop-2-en-1-one, C14H14N2O2
  15. Crystal structure of (E)-2-(4-hydroxy-3-methoxybenzylidene)-6-methoxy-3,4-dihydronaphthalen-1(2H)-one, C19H18O4
  16. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-(4-ethoxyphenyl)-3-hydroxyprop-2-en-1-one, C16H18N2O3
  17. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-hydroxy-3-(p-toly)prop-2-en-1-one, C15H16N2O2
  18. Crystal structure of 1-acetyl-3-(3-chlorophenyl)-5-(4-isopropylphenyl)-4,5-dihydro-(1H)-pyrazole, C20H21ClN2O
  19. The crystal structure of 1-methyl-2,4-dinitro-5-iodoimidazole, C4H3IN4O4
  20. The crystal structure of 4-chloro-3,5-dinitroaniline, C6H4ClN3O4
  21. Crystal structure of N,N-dimethyl-N′-(2-methyl-4-oxo-5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidin-3(4H)-yl)formimidamide, C14H18N4OS
  22. Crystal structure of tetrakis(μ2-acetato-κ2O:O′)-bis[μ3-4-chloro-2,6-bis((methylimino)methyl)phenolato-κ2N,O:O,N′]-(μ4-oxido)tetracopper(II), C28H32Cl2Cu4N4O11
  23. Crystal structure of catena-poly[diaqua-bis(μ2-ethane-1,2-diyl-bis(pyridine-3-carboxylate-κ2N:N′))copper(II)] dinitrate, C28H28CuN6O16
  24. Synthesis and crystal structure of catena-poly[(μ2-nicotinato-κ2O,O′: κ1N)-(nitrato-κ1O)-(bis(2-benzimidazol-ylmethyl)amine-κ3N,N′,N′′)lead(II)], C22H18N7O5Pb
  25. The twinned crystal structure of (4SR)-7-benzyl-2,4,8,8-tetramethyl-7,8-dihydroimidazo[5,1-c][1,2,4]triazine-3,6(2H,4H)-dione, C16H20N4O2
  26. Crystal structure of (Z)-3-hydroxy-3-(4-methoxyphenyl)-1-(pyridin-2-yl)prop-2-en-1-one, C15H13NO3
  27. Crystal structure of 2-amino-4-(2,3-dichlorophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carbonitrile, C16H12Cl2N2O2
  28. Crystal structure of catena-poly[(μ2-butane-1,4-diyl-bis(pyridine-3-carboxylato-κN))silver(I)] tetrafluoroborate, C16H16AgN2O4BF4
  29. Crystal structure of poly[diaqua-(1,10-phenanthroline-κ2N,N′)-(μ2-2,5-dihydroxytere-phthalato)-bis(μ4-2,5-dihydroxyterephthalato)dicerium(III)], C24H16CeN2O10
  30. Crystal structure of 5,7,4′-trihydroxy-3,8,3′-trymethoxyflavone, C18H16O8
  31. Crystal structure of N-(3,4-dichlorobenzylidene)-4-methylaniline, C14H11Cl2N
  32. Crystal structure of 4-(3-Methoxy-phenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydro-quinoline-3-carboxylic acid ethyl ester, C22H27NO4
  33. Crystal structure of 2-amino-4-(3-fluorophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carbonitrile, C16H13FN2O2
  34. Crystal structure of 1,1,(3,4-dihydroxythieno[2,3-b] thiophene-2,5-diyl)bis(2-bromoethanone), C10H6Br2O4S2
  35. The crystal structure of N,N′-(4,4′-oxydibenzyl)-bisisonicotinamide 3.5 hydrate, C24H24N4O6
  36. Crystal structure of catena-poly[hexakis(μ2-chlorido)-hexakis(4-(1H-pyrazol-5-yl)pyridine-κN)tricadmium(II)], Cd3C48H42Cl6N18
  37. Crystal structure of 2-(4-(dimethylamino)phenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C21H22I1N3
  38. Crystal structure of 4-(1,3-dimethyl-2,3-dihydro-1H-perimidin-2-yl)benzonitrile, C20H17N3
  39. Crystal structure of tetrakis(μ2-acetato-κ2O:O′)-bis(2,2′-sulfonyldipyrazine-κ1N)dicopper(II), C24H24Cu2N8O12S2
  40. Crystal structure of 1-(4-chlorophenyl)-6,8-diphenyl-1H-pyrazolo[4,3-c]quinoline, C28H18ClN3
  41. Crystal structure of methyl 3-((1-(2-(methoxycarbonyl)benzyl)-1H-1,2,3-triazol-4-yl)methoxy)-2-naphthoate, C24H21N3O5
  42. Crystal structure of (tris(2-pyridylmethyl)amine-κ4N,N′,N′′,N′′′′)-chloranilato-κO,O′-zinc(II) – methanol (1/1), C25H22Cl2N4O5Zn
  43. Crystal structure of 1,1-dimethyl-3-(4-methoxyphenyl)urea, C10H14N2O2
  44. Crystal structure of 4a-Hydroxy-9-(2-nitro-phenyl)-3,4,4a,5,6,7,9,9a-octahydro-2H-xanthene-1,8-dione, C19H19NO6
  45. Crystal structure of chlorido-(η6–1-isopropyl-4-methyl benzene)-(1-(pyridin-2-yl)-N-(p-tolyl)methanimine-κ2N,N′)ruthenium(II) hexafluorophosphate(V), C23H26ClF6N2PRu
  46. Crystal structure of phenyl(2-phenyl-2,3-dihydro-1H-perimidin-2-yl)methanone, C24H18N2O
  47. Crystal structure of (E)-3-methyl-4-((3-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)methylene)-1-phenyl-1H-pyrazol-5(4H)-one, C29H23N7O
  48. Crystal structure of 2-(4-(2-butyl-1,3-dioxo-2,3-dihydro-1H-benzo[de]isoquinolin-6-yl)piperazin-1-yl)-2-oxoethyldiethylcarbamodithioate, C27H34N4O3S2
  49. Crystal structure of poly-[diaqua-bis(μ-4,4′-bipyridine-κ2N:N′)cobalt(II)] bis(4-chlorobenzenesulfonate) – 4,4′-bipyridine – water (1/1/2), C42H40Cl2CoN6O10S2
  50. Crystal structure of (η6-benzene)-(N-(2,6-dimethylphenyl)-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) perchlorate monohydrate, C20H20Cl2N2O5Ru
  51. Crystal structure of 4,10,16,22-tetrahydroxy-6,12,18,24-tetramethoxy-2,8,14,20-tetraethylphenylresorcin[4]arene – ethyl acetate (1/1), C68H72O10
  52. Crystal structure of chlorido-(N-(2,5-dichlorophenyl)-1-(pyridin-2-yl)methanimine-κ2N,N′)(η6-1-isopropyl-4-methyl benzene) ruthenium (II) tetrafluoroborate, C22H22Cl3N2BF4Ru
  53. Crystal structure of 3-(5-methyl-1-p-tolyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazole-4-carbaldehyde, a rare Z′ = 3 structure, C20H17N5O
  54. Crystal structure of 5-(5-(4-chlorophenyl)-1-phenyl-1H-pyrazol-3-yl)-N-phenyl-1,3,4-thiadiazol-2-amine, C23H16ClN5S
  55. Crystal structure of 7-hydroxy-3-(4-hydroxyphenyl)-4H-1-benzopyran-4-one-N,N-dimethylformamide (1/1), C18H17NO5
  56. Crystal structure of halogen-bonded 2-chloro-1,10-phenanthroline—1,4-diiodotetrafluorobenzene (2/1), C30H14Cl2F4I2N4
  57. Crystal structure of 1-(4,4-dimethyl-2,6-dithioxo-1,3,5-triazinan-1-yl)-3-(diethylaminocarbonyl)thiourea, C11H20N6OS3
  58. Crystal structure of methyl 1-(4-fluorobenzyl)-3-phenyl-1H-pyrazole-5-carboxylate, C18H15FN2O2
  59. Crystal structure of 1,1-dimethyl-3-(4-methylphenyl)urea, C10H14N2O
  60. Crystal structure of yttrium gallium antimonide, Y5Ga1.24Sb2.77
  61. Crystal structure of 2-(bis(4-methoxyphenyl)amino)-2-oxoacetic acid, C16H15NO5
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