Startseite Crystal structure of halogen-bonded 2-chloro-1,10-phenanthroline—1,4-diiodotetrafluorobenzene (2/1), C30H14Cl2F4I2N4
Artikel Open Access

Crystal structure of halogen-bonded 2-chloro-1,10-phenanthroline—1,4-diiodotetrafluorobenzene (2/1), C30H14Cl2F4I2N4

  • Jian-Ge Wang und Weizhou Wang EMAIL logo
Veröffentlicht/Copyright: 25. Februar 2017

Abstract

C30H14Cl2F4I2N4, monoclinic, I2/a (no. 15), a = 17.3143(9) Å, b = 8.7081(4) Å, c = 19.6795(8) Å, β = 101.795(4)°, V = 2904.5(2) Å3, Z = 4, Rgt(F) = 0.0340, wRref (F2) = 0.0890, T = 293 K.

CCDC no.:: 1532297

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.32 × 0.23 × 0.21 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.1 cm−1
Diffractometer, scan mode:SuperNova, ω-scans
2θmax, completeness:58.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:9674, 3412, 0.024
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2878
N(param)refined:190
Programs:CrysAlisPRO [8], SHELX [9], OLEX2 [10]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
I10.464018(14)0.84114(3)0.653802(12)0.05959(11)
Cl10.29627(10)0.4627(2)0.58798(8)0.1215(6)
F10.59263(13)0.7692(3)0.56108(13)0.0799(7)
F20.61909(14)0.8892(3)0.44490(14)0.0803(7)
N10.33559(18)0.5813(4)0.71058(16)0.0606(8)
N20.43706(18)0.7782(4)0.79387(15)0.0589(7)
C10.2844(3)0.4934(5)0.6723(2)0.0784(13)
C20.2199(3)0.4198(5)0.6937(3)0.0883(16)
H20.18410.35880.66370.106*
C30.2138(3)0.4444(6)0.7608(3)0.0918(16)
H30.17330.39680.77740.110*
C40.2657(2)0.5375(5)0.8045(2)0.0697(11)
C50.2609(3)0.5687(6)0.8747(3)0.0845(15)
H50.22190.52050.89320.101*
C60.3106(3)0.6647(6)0.9147(2)0.0797(14)
H60.30570.68160.96040.096*
C70.3703(2)0.7409(5)0.88866(19)0.0633(10)
C80.4206(3)0.8459(5)0.9276(2)0.0776(13)
H80.41520.86900.97260.093*
C90.4777(3)0.9154(6)0.9009(2)0.0858(14)
H90.51140.98650.92680.103*
C100.4847(3)0.8785(5)0.8343(2)0.0743(11)
H100.52450.92540.81640.089*
C110.3799(2)0.7099(4)0.81990(18)0.0521(8)
C120.3272(2)0.6068(4)0.77691(19)0.0536(8)
C130.48665(19)0.9366(4)0.56225(17)0.0492(7)
C140.5461(2)0.8851(4)0.53199(19)0.0524(8)
C150.55938(19)0.9463(4)0.47132(18)0.0514(8)

Source of material

2-Chloro-1,10-phenanthroline, 1,4-dichlorotetrafluorobenzene and dichloromethane were purchased from Aldrich Chemical Co., and used as received. The halogen bond donor and halogen bond acceptor in a molar ratio of 1:1 were dissolved in 50 mL of dichloromethane with gentle stirring at room temperature. The undissolved materials were removed by filtration. The filtrate was set aside for crystallization at 6–10 °C. After a few days, yellow crystals of title compound were obtained.

Experimental details

All H atoms were placed in calculated positions and were included in the refinement in the riding model approximation, with Uiso(H) set to 1.2Ueq(C).

Discussion

The halogen bond is the noncovalent interaction involving halogen atom as acceptor of electron density [1]. In recent years, the important role of the halogen bond in crystal growth and design has been revealed both experimentally and theoretically [2], [3], [4]. Besides the mono-coordinate halogen bond, the bifurcated halogen bond was also frequently found in the crystal structures [5], [6], [7]. In fact, among the halogen bond supramolecular synthons proposed by Desiraju, the robustness of the bifurcated halogen bond synthons are outstanding [5]. The compounds 2-chloro-1,10-phenanthroline and 1,4-dichlorotetrafluorobenzene are good candidates for the formation of the bifurcated halogen bond.

All bond lengths and angles in the title crystal structure are in normal ranges. One 1,4-dichlorotetrafluorobenzene molecule and two 2-chloro-1,10-phenanthroline molecules are linked by two asymmetric bifurcated halogen bonds with d(I1⋯N1) = 3.511 Å, d(I1⋯N2) = 2.940 Å, <(C13—I1⋯N1) = 140.55° and <(C13—I1⋯N2) = 167.13°. According to the interatomic distances, the halogen C13—I1⋯N2 is much stronger than the very weak halogen-nitrogen contact C13—I1⋯N1, which reproduces the van-der-Waals distance. The four fluorine atoms of 1,4-dichlorotetrafluorobenzene are not involved in the formation of C—H⋯F hydrogen bonds, as the H⋯F distances reflect the van-der-Waals distances. At the same time, the π⋯π stacking interactions between 2-chloro-1,10-phenanthroline and 1,4-dichlorotetrafluorobenzene and the π⋯π stacking interactions between two 2-chloro-1,10-phenanthroline molecules are also formed. All these non-covalent bonds cooperate to construct the 3-D connected crystal structure.

Acknowledgement

This work was supported by the National Science Foundation of China (Grant No. 21173113) and the Program for Science & Technology Innovation Talents in Universities of Henan Province (Grant No. 13HASTIT015).

References

1 Desiraju, G. R.; Ho, P. S.; Kloo, L.; Legon, A. C.; Marquardt, R.; Metrangolo, P.; Politzer, P.; Resnati, G.; Rissanen, K.: Definition of the halogen bond. Pure Appl. Chem. 85 (2013) 1711–1713.10.1351/PAC-REC-12-05-10Suche in Google Scholar

2 Cavallo, G.; Metrangolo, P.; Milani, R.; Pilati, T.; Priimagi, A.; Resnati, G.; Terraneo, G.: The halogen bond. Chem. Rev. 116 (2016) 2478–2601.10.1021/acs.chemrev.5b00484Suche in Google Scholar PubMed PubMed Central

3 Wang, H.; Wang, W.; Jin, W. J.: σ-hole bond vs π-hole bond: a comparison based on halogen bond. Chem. Rev. 116 (2016) 5072–5104.10.1021/acs.chemrev.5b00527Suche in Google Scholar PubMed

4 Kolář, M. H.; Hobza, P.: Computer modeling of halogen bonds and other σ-hole interactions. Chem. Rev. 116 (2016) 5155–5187.10.1021/acs.chemrev.5b00560Suche in Google Scholar PubMed

5 Desiraju, G. R.: Supramolecular synthons in crystal engineering − a new organic synthesis. Angew. Chem. Int. Ed. 34 (1995) 2311–2327.10.1002/anie.199523111Suche in Google Scholar

6 Allen, F. H.; Lommerse, J. P. M.; Hoy, V. J.; Howard, J. A. K.; Desiraju, G. R.: Halogen⋯O(Nitro) supramolecular synthon in crystal engineering: a combined crystallographic database and ab initio molecular orbital study. Acta Cryst. B53 (1997) 1006–1016.10.1107/S0108768197010227Suche in Google Scholar

7 Ji, B.; Wang, W.; Deng, D.; Zhang, Y.: Symmetrical bifurcated halogen bond: design and synthesis. Cryst. Growth Des. 11 (2011) 3622–3628.10.1021/cg200603zSuche in Google Scholar

8 Agilent Technologies: CrysAlisPRO Software system, version 1.171.38.41r, Agilent Technologies UK Ltd, Oxford, UK, (2015).Suche in Google Scholar

9 Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Suche in Google Scholar PubMed

10 Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Cryst. 42 (2009) 339–341.10.1107/S0021889808042726Suche in Google Scholar

Received: 2016-9-1
Accepted: 2017-2-14
Published Online: 2017-2-25
Published in Print: 2017-3-1

©2017 Jian-Ge Wang et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Artikel in diesem Heft

  1. Cover and Frontmatter
  2. The crystal structure of triphenylphosphineoxide – 2,5-dichloro-3,6-dihydroxycyclohexa-2,5-diene-1,4-dione (2/1), C42H32Cl2O6P2
  3. Crystal structure of poly-[diaqua-[bis(μ2-hydroxy)-bis(μ4-3,4,5,6-tetrachlorophthalato-κ3O,O′:O′; κ2O′′:O′′′)dilanthanum(III)], C8H3Cl4LaO6
  4. Crystal structure of 1,1′-(3,4-diphenylthieno[2,3-b]thiophene-2,5-diyl)bis[1-phenyl-methanone], C32H20O2S2
  5. Crystal structure of 4a-hydroxy-9-(3,5-dibromo-phenyl)-3,4,4a,5,6,7,9,9a-octahydro-2H-xanthene-1,8-dione, C19H18Br2O4
  6. Crystal structure of 5-hydroxy-4,6,9,10-tetramethyl-1-oxo-6-vinyldecahydro-3a,9-propanocyclopenta[8]annulen-8-yl 2-((2-methyl-1-(3-methylbenzamido)propan-2-yl)thio)acetate, C34H49NO5S
  7. Crystal structure of pyridinium bis(naphthalane-2,3-diolato-κ2O,O′)borate monohydrate, C25H20BNO5
  8. Crystal structure of 1,1′-((1E,1′E)-(((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(azanylylidene))bis(methanylylidene))bis(naphthalen-2-olato)nickel(II), C72H52N4O8Ni2
  9. The crystal structure of 3-(2-acetyl-4-butyramido-phenoxy)-2-hydroxy-N-isopropylpropan-1-aminium tetraphenylborate, C42H49BN2O4
  10. Crystal structure of 4-bromobenzyl (Z)-N′-(adamantan-1-yl)-4-phenylpiperazine-1-carbothioimidate, C28H34BrN3S
  11. Crystal structure of poly-[(μ6-benzene-1,2,4,5-tetracarboxylato)-(μ2-1,2-bis(imidazol-1-ylmethyl)benzene)dicobalt(II)], Co2C24H16N4O8
  12. Crystal structure of catena-(bis(μ2-1, 2-bis(imidazole-1-ylmethyl)benzene-κN:N′)-dichlororido-nickel(II)), C28H28Cl2N8Ni
  13. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-hydroxy-3-(4-methoxyphenyl)prop-2-en-1-one, C15H16N2O3
  14. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-hydroxy-3-phenylprop-2-en-1-one, C14H14N2O2
  15. Crystal structure of (E)-2-(4-hydroxy-3-methoxybenzylidene)-6-methoxy-3,4-dihydronaphthalen-1(2H)-one, C19H18O4
  16. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-(4-ethoxyphenyl)-3-hydroxyprop-2-en-1-one, C16H18N2O3
  17. Crystal structure of (Z)-1-(1,5-dimethyl-1H-pyrazol-3-yl)-3-hydroxy-3-(p-toly)prop-2-en-1-one, C15H16N2O2
  18. Crystal structure of 1-acetyl-3-(3-chlorophenyl)-5-(4-isopropylphenyl)-4,5-dihydro-(1H)-pyrazole, C20H21ClN2O
  19. The crystal structure of 1-methyl-2,4-dinitro-5-iodoimidazole, C4H3IN4O4
  20. The crystal structure of 4-chloro-3,5-dinitroaniline, C6H4ClN3O4
  21. Crystal structure of N,N-dimethyl-N′-(2-methyl-4-oxo-5,6,7,8-tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidin-3(4H)-yl)formimidamide, C14H18N4OS
  22. Crystal structure of tetrakis(μ2-acetato-κ2O:O′)-bis[μ3-4-chloro-2,6-bis((methylimino)methyl)phenolato-κ2N,O:O,N′]-(μ4-oxido)tetracopper(II), C28H32Cl2Cu4N4O11
  23. Crystal structure of catena-poly[diaqua-bis(μ2-ethane-1,2-diyl-bis(pyridine-3-carboxylate-κ2N:N′))copper(II)] dinitrate, C28H28CuN6O16
  24. Synthesis and crystal structure of catena-poly[(μ2-nicotinato-κ2O,O′: κ1N)-(nitrato-κ1O)-(bis(2-benzimidazol-ylmethyl)amine-κ3N,N′,N′′)lead(II)], C22H18N7O5Pb
  25. The twinned crystal structure of (4SR)-7-benzyl-2,4,8,8-tetramethyl-7,8-dihydroimidazo[5,1-c][1,2,4]triazine-3,6(2H,4H)-dione, C16H20N4O2
  26. Crystal structure of (Z)-3-hydroxy-3-(4-methoxyphenyl)-1-(pyridin-2-yl)prop-2-en-1-one, C15H13NO3
  27. Crystal structure of 2-amino-4-(2,3-dichlorophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carbonitrile, C16H12Cl2N2O2
  28. Crystal structure of catena-poly[(μ2-butane-1,4-diyl-bis(pyridine-3-carboxylato-κN))silver(I)] tetrafluoroborate, C16H16AgN2O4BF4
  29. Crystal structure of poly[diaqua-(1,10-phenanthroline-κ2N,N′)-(μ2-2,5-dihydroxytere-phthalato)-bis(μ4-2,5-dihydroxyterephthalato)dicerium(III)], C24H16CeN2O10
  30. Crystal structure of 5,7,4′-trihydroxy-3,8,3′-trymethoxyflavone, C18H16O8
  31. Crystal structure of N-(3,4-dichlorobenzylidene)-4-methylaniline, C14H11Cl2N
  32. Crystal structure of 4-(3-Methoxy-phenyl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexahydro-quinoline-3-carboxylic acid ethyl ester, C22H27NO4
  33. Crystal structure of 2-amino-4-(3-fluorophenyl)-5-oxo-5,6,7,8-tetrahydro-4H-chromene-3-carbonitrile, C16H13FN2O2
  34. Crystal structure of 1,1,(3,4-dihydroxythieno[2,3-b] thiophene-2,5-diyl)bis(2-bromoethanone), C10H6Br2O4S2
  35. The crystal structure of N,N′-(4,4′-oxydibenzyl)-bisisonicotinamide 3.5 hydrate, C24H24N4O6
  36. Crystal structure of catena-poly[hexakis(μ2-chlorido)-hexakis(4-(1H-pyrazol-5-yl)pyridine-κN)tricadmium(II)], Cd3C48H42Cl6N18
  37. Crystal structure of 2-(4-(dimethylamino)phenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C21H22I1N3
  38. Crystal structure of 4-(1,3-dimethyl-2,3-dihydro-1H-perimidin-2-yl)benzonitrile, C20H17N3
  39. Crystal structure of tetrakis(μ2-acetato-κ2O:O′)-bis(2,2′-sulfonyldipyrazine-κ1N)dicopper(II), C24H24Cu2N8O12S2
  40. Crystal structure of 1-(4-chlorophenyl)-6,8-diphenyl-1H-pyrazolo[4,3-c]quinoline, C28H18ClN3
  41. Crystal structure of methyl 3-((1-(2-(methoxycarbonyl)benzyl)-1H-1,2,3-triazol-4-yl)methoxy)-2-naphthoate, C24H21N3O5
  42. Crystal structure of (tris(2-pyridylmethyl)amine-κ4N,N′,N′′,N′′′′)-chloranilato-κO,O′-zinc(II) – methanol (1/1), C25H22Cl2N4O5Zn
  43. Crystal structure of 1,1-dimethyl-3-(4-methoxyphenyl)urea, C10H14N2O2
  44. Crystal structure of 4a-Hydroxy-9-(2-nitro-phenyl)-3,4,4a,5,6,7,9,9a-octahydro-2H-xanthene-1,8-dione, C19H19NO6
  45. Crystal structure of chlorido-(η6–1-isopropyl-4-methyl benzene)-(1-(pyridin-2-yl)-N-(p-tolyl)methanimine-κ2N,N′)ruthenium(II) hexafluorophosphate(V), C23H26ClF6N2PRu
  46. Crystal structure of phenyl(2-phenyl-2,3-dihydro-1H-perimidin-2-yl)methanone, C24H18N2O
  47. Crystal structure of (E)-3-methyl-4-((3-(5-methyl-1-phenyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazol-4-yl)methylene)-1-phenyl-1H-pyrazol-5(4H)-one, C29H23N7O
  48. Crystal structure of 2-(4-(2-butyl-1,3-dioxo-2,3-dihydro-1H-benzo[de]isoquinolin-6-yl)piperazin-1-yl)-2-oxoethyldiethylcarbamodithioate, C27H34N4O3S2
  49. Crystal structure of poly-[diaqua-bis(μ-4,4′-bipyridine-κ2N:N′)cobalt(II)] bis(4-chlorobenzenesulfonate) – 4,4′-bipyridine – water (1/1/2), C42H40Cl2CoN6O10S2
  50. Crystal structure of (η6-benzene)-(N-(2,6-dimethylphenyl)-1-(pyridin-2-yl)methanimine-κ2N,N′)ruthenium(II) perchlorate monohydrate, C20H20Cl2N2O5Ru
  51. Crystal structure of 4,10,16,22-tetrahydroxy-6,12,18,24-tetramethoxy-2,8,14,20-tetraethylphenylresorcin[4]arene – ethyl acetate (1/1), C68H72O10
  52. Crystal structure of chlorido-(N-(2,5-dichlorophenyl)-1-(pyridin-2-yl)methanimine-κ2N,N′)(η6-1-isopropyl-4-methyl benzene) ruthenium (II) tetrafluoroborate, C22H22Cl3N2BF4Ru
  53. Crystal structure of 3-(5-methyl-1-p-tolyl-1H-1,2,3-triazol-4-yl)-1-phenyl-1H-pyrazole-4-carbaldehyde, a rare Z′ = 3 structure, C20H17N5O
  54. Crystal structure of 5-(5-(4-chlorophenyl)-1-phenyl-1H-pyrazol-3-yl)-N-phenyl-1,3,4-thiadiazol-2-amine, C23H16ClN5S
  55. Crystal structure of 7-hydroxy-3-(4-hydroxyphenyl)-4H-1-benzopyran-4-one-N,N-dimethylformamide (1/1), C18H17NO5
  56. Crystal structure of halogen-bonded 2-chloro-1,10-phenanthroline—1,4-diiodotetrafluorobenzene (2/1), C30H14Cl2F4I2N4
  57. Crystal structure of 1-(4,4-dimethyl-2,6-dithioxo-1,3,5-triazinan-1-yl)-3-(diethylaminocarbonyl)thiourea, C11H20N6OS3
  58. Crystal structure of methyl 1-(4-fluorobenzyl)-3-phenyl-1H-pyrazole-5-carboxylate, C18H15FN2O2
  59. Crystal structure of 1,1-dimethyl-3-(4-methylphenyl)urea, C10H14N2O
  60. Crystal structure of yttrium gallium antimonide, Y5Ga1.24Sb2.77
  61. Crystal structure of 2-(bis(4-methoxyphenyl)amino)-2-oxoacetic acid, C16H15NO5
Heruntergeladen am 22.9.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2016-0263/html
Button zum nach oben scrollen