Abstract
Microbial induced calcite precipitation method MICP is a sustainable and eco-friendly technique for soil stabilization. To show the optimum effectiveness of the bioremediation within the silty sand matrix, a model of plastic boxes and PVC molds was made with an air pump placed in an isolated room at a temperature range of 25–27°C. The molds were perforated from sides and bottoms and opened from the top with a transparent film of filter paper (placed on the inner surface). The major feature of this treatment system is allowing the cementation solution to penetrate easily into soil samples. The results showed a positive effect of Bacillus subtilis in enhancing the strength properties of lead contaminated soil. Unconfined compressive strength increased from 65 kPa to 539, 527, and 525 kPa. Cohesion increased from 4.5 to 40, 41.9, and 42 kPa at concentrations of 15, 20, and 25% respectively. Angle of internal friction increased from 18.94° to 38.2°, 40°, and 40.74° respectively after 14 days. Thereafter, it become 40.92° and 41.5° at concentrations of 15 and 20%, respectively and decreased to 36.75° of 25% at 28 days. Microstructural characteristics represent the formation of calcium carbonate and lead compounds, which were the reasons for the improvement in the strength and the alteration in lead from a soluble to insoluble form, a hence less toxic element.
1 Introduction
Over the past decades, the negative effects of conventional soil treatment technologies on the environment have encouraged soil researchers to put more emphasis on the implementation of eco-friendly soil modification approaches [1].
Heavy metals are regarded as important contaminants with a range of diverse effects on the geotechnical qualities of soils [2]. They impair the soil’s engineering mechanical qualities, causing cracks in the building structure, settlement, and foundation deformation [3].
Although soils contaminants (particularly heavy metals) might restrict stabilization reactions and hence impair the strength development of stabilized soils, the content of the stabilizer may also show a significant role in the improvement of soil strength [4, 5, 6].
Currently, chemical, physical, and biological approaches are three accessible types of soil remediation technologies [7]. In terms of geotechnical applications, traditional soil improvement techniques require a lot of energy in the context of material production and on-site operation [8].
Bio-mediated soil treatment has just developed as a novel, long-term ground improvement technology. To create calcite in the soil matrix, this approach uses a biological process known as microbial calcite (MICP). The calcite produced is accountable for reinforcing and clogging soils [9]. The bacterial calcium carbonate precipitation is considered as an additive to modify the geotechnical properties of soils [10, 11]. MICP is a current and inventive technique of soil enhancement [12, 13]. MICP is a comparatively green, sustainable, and environmentally friendly strategy that can change and improve the ground state. Soil stabilization by the MICP technique satisfies the requirements of ecological construction as this treatment causes minimal disturbance in the soil environment [9, 14]. Bacteria and strengthening substances that penetrated into the soil to create calcite precipitation improves soil’s engineering qualities [15].
The urease-driven MICP process is a promising selection for heavy metal immobilization. Throughout the precipitation of calcite, toxic metal ions can be incorporated into CaCO3, substituting Ca2+ or co-precipitate in the CaCO3 lattice structure [16].
With the use of the MICP technique in the bioremediation process, the role of calcium ion takes advantage of the Pb2+ incorporation on its surfaces through the substitution in the calcite lattice. Hence detoxifying the toxic lead ions, after which Pb2+ is changed from soluble to insoluble forms [16, 17].
The research aims are to demonstrate the influence of bacterial action on the geoenvironmental properties of lead contaminated silty sand. This experimental study was achieved by the biological deposition of calcium carbonate on silty sandy soil using Bacillus subtilis. The samples were prepared manually under two variables, including bacterial solution concentration and time of curing. The experiments included UCS and shear stress tests. Moreover, XRD, SEM analyses were applied to examine the microstructural modifications of the soil before and after treatment.
2 Materials and methodology
2.1 The soil
In this study, soil samples were brought from the Alkraiat region, north of Baghdad city, at a depth range from 0 to 1 m. The soil was oven dried, and sieved to ensure a uniform grade, then preserved at clean plastic bags prior to soil analyzing and contamination, were tested and analyzed according to (ASTM, D 422-63). The physical properties and soil classification are presented in Table 1, while the chemical test is illustrated in Table 2.
Physical Properties of soil
| Physical Properties | Value |
|---|---|
| Particle size distribution | |
| Sand (%) | 55 |
| Silt (%) | 35 |
| Clay (%) | 10 |
| Maximum Dry density (g/cm3) | 1.85 |
| Optimum Moisture content (%) | 12.2 |
| Specific gravity | 2.66 |
| Soil classification USCS | Silty sand (SM) |
Chemical test of soil
| Chemical test | Value (%) | Specification |
|---|---|---|
| Total Soluble Salt (TSS) | 2.2 | Earth manual E8 |
| SO3 | 0.81 | BS 1377: Part 3: 1990 |
| Organic Matter | 1.286 | |
| pH | 8.39 | |
| CaCO3 | 22.95 | |
| CL | 0.096 | |
| Gypsum (CaSO4·2H2O) | 1.64 |
2.2 Microorganisms
An isolated bacterial entitled Bacillus subtilis was applied in this research, which is a Gram-positive, aerobic, rod-shaped, and spore-forming bacteria that can be found in water, soil, and plants [18]. It can induce CaCO3 precipitation with appropriate media, as well as living in severe environments [19].
These bacteria were cultured in the Ministry of Science and Technology laboratories under aerobic batch conditions using a growth medium. The medium was prepared by dissolving the following chemicals in one liter of distilled water (Table 3). The medium solution was autoclaved for 12 minutes at 121°C.
Growth media
| Chemicals | Value |
|---|---|
| peptone | 5 g |
| NaCL | 5g |
| Yeast extract | 4 g |
| Beef extract | 1 g |
| Urea Solution | 50 ml |
2.3 Cementation reagent
Cementation reagents play a significant role in promoting calcite precipitation. The cementation solution ingredients per liter of deionized water are represented in Table 4.
Cementation ingredients
| Chemicals | Value |
|---|---|
| Nutrient broth | 3 g |
| NH4Cl (ammonium chloride) | 10 g |
| NaHCO3 (sodium acid carbonate) | 2.12 |
| CaCl2 (calcium chloride) | 27.75 g |
| CO(NH2)2 (urea) | 30.03 g |
2.4 The contaminate
In this study, type of contaminant used was lead nitrate (250 mg/kg), lead (400 mg/k), and lead (II) nitrate. The lead nitrate has high solubility in water and is readily dissolved in distilled water to give a colorless solution.
Then mixing by hand was performed until thoroughly homogenized, The Pb spiked soil was kept in clean plastic bags and allowed to physical and chemical behavior of lead through the soil for seven days.
2.5 Stirred tank reactor model
In this model, the MICP treatment consisted of 12 plastic boxes with dimensions (17 cm × 17 cm × 20 cm) and two models of molds for unconfined compressive strength and direct shear tests that were placed in each box (Figures 1 and 2). A split polyvinyl chloride (PVC) pipe (perforated from sides and bottom and opened from top, with a transparent film of filter paper) was placed on the inner surface to facilitate sample extraction and reduce potential losses of soil during preparation and treatment. The first model for measuring unconfined compressive strength with net inner dimensions of 10 cm length, 5 cm diameter, and a height to diameter ratio of 2:1. The second mold for measuring direct shear test with dimensions of 6 cm × 6 cm × 2 cm. To perform bio-mediated soil improvement, the prepared bacterial solution was mixed with the lead contaminated soil (15%, 20% and 25% by weight), and then the molds were distributed inside a plastic basin filled with the cementing solution. Two molds of each type were inserted in each box, generating a total number of 48 molds. The soil was extruded from the plastic mold, and a series of tests were performed to calculate the soil shear strength and unconfined pressure after 7, 14, 28 curing days.

Photograph of the (a) Treatment system, (b, c, e) molds and samples, (d) UCS test

Schematic drawing for the treatment system
The molds were placed on a perforated shelf inside the boxes. The boxes were filled with cementation medium, with a height of 2 cm less than the top. The boxes were connected to the aeration system: air pump, and plastic tubes that were extended into the boxes. The main procedure of this treatment system is as follows: soil samples were completely immersed in the cementing agent, the agent simply penetrated the soil samples. The temperature was controlled by placing the models in an isolated room (25–27°C), and measured periodically over time through the treatment period.
3 Results and discussion
3.1 The effect of MICP on the soil strength
3.1.1 Unconfined compressive strength (UCS)
In order to assess the improvement degree of soil stabilization, unconfined compressive strength (UCS) was used as a measure of strength characteristic of stabilized samples, which was an indication of whether the treated material had an acceptable strength to support any overburden pressure.
The test for silty sand soil before and after treatment was approved according to the system given in (ASTM D 2166-07). Figure 3 shows the UCS values of samples treated with different percentages of the bacterial solutions (0, 15, 20, 25%), which were obtained after 7, 14, and 28 curing days.

Unconfined compression strength versus time at different concentrations of bacterial solution (B.s)
It was observed that there was a clear increase in the compressive strength of polluted soil from 65 kPa to 539 kPa for sample with 15% bacterial solution at 28 days. Soil with 25% bacterial solution showed a sharper increase in the strength than that with 15 and 20% within the initial days, and growth becomes smooth until 28 days achieving a similar value, although the sample with a percentage of 15% showed 14 kPa higher than that with a percentage of 25%. This was due to the speed and quantity of carbonates formed, which fill the voids and act as linking bridges, or maybe due to a change in the concentration of cementing regent with time. Sharma and Ramkrishnan [20] found that UCS changed with cementing regent in spite of the bacterial solution, while Saing et al. [21] concluded that the value of compressive strength increases significantly along with the addition of bacteria and the increase in the curing time.
Also Hasriana et al. [22] found that the compressive strength value rose with the increase of bacteria but then declined. This phenomenon was due to several factors, i.e., Bacillus subtilis bacteria hydrolyze the urea which is catalyzed by the urease enzyme (produced by bacteria). With the dissolved Ca2+ in the surrounding environment, it produces solid calcite/calcium carbonate (CaCO3) crystals that would bond closely and cause the soil hardness. The compressive strength value increases typically during the bacterial increase due to the increase in particle density caused by the Microbial-Induced Calcite Precipitation process. Meanwhile, the precipitated calcite is used to fill the cavity at soil mass and bond the weak soil grains. When the cavity decreases, precipitate calcite binds the solid soil. Therefore, when the concentration of bacteria increased, the value of unconfined compressive strength decreases.
The time factor had a clear effect on strength. Sharma and Ramkrishnan [20] found that strength increased positively with the treatment period. This is a reasonable outcome because the longer the treatment duration, the more calcium carbonate deposits are usually formed [23].
It was noticed that there was a slight growth in the compressive strength of the contaminated sample cured with the cementing solution (no bacterial solution), taking into account that literature indicated a decline in the compressive strength with a rise in the level of soil contamination [24], however Moghal et al. and Ojuri and Oluwatuyi [25, 26] showed an increase in the strength of polluted soil cured by cementing solution.
3.1.2 Direct shear test
The direct shear test was applied in this study to examine the behavior of shear strength parameters, cohesion (c) and angle of friction (Φ) for silty sandy soils before and after bacterial treatment at different durations (7, 14, and 28 days). The direct shear test was applied depending on the procedure given in ASTM D (3080-11).
Figure 4 represents the outcome of bacterial solution on cohesion (c) with time. It seems that the cohesion of natural soil increased with the increase of bacterial solution and curing time, from 4.5 kPa approaching 40, 40.9, and 42 kPa for soils containing 15, 20, 25% respectively of bacterial solution after 28 days. Also, the rate of increase is faster during the initial days for soil containing 25% bacterial solution [27]. Zamani and Montoya show that the MICP treatment method has a significant influence on shear strength properties of silty soil, as shear strength increases and excess pore pressures decrease. The shear stress values of the treated samples are greater than the untreated soil samples [10].

Influence of bacterial solution with time on the cohesion
Figure 5 shows the influence of bacterial treatment upon the internal friction angle of natural soil over time. It can be seen that there was an increase from 18.93° up to 38.2, 40.0, and 40.75° for contaminated soil with 15%, 20%, and 25% of bacterial solution respectively at 14 days of curing. Then, an increase up to 40.92 and 41.5° for bacteria solution of 15 and 20% with a little decrease to about 36.76° for 25% at 28 days. Montoya et al. [28] used MICP to reinforce sandy coastal deposits and found that the soil sample had a strength increase (as confirmed by the unconfined compression tests) and an increase in the friction angle. The slightly cemented sand had a resistance increase (as proved by the unconfined compression tests) and also an increase in the friction angle [27, 28]. In comparison, Pakbaz et al. [29] showed an increase in both (c) and (Φ) due to the MICP treatment.

The effect of bacterial solution (B.s) with time on the internal friction
There is a slight increase in cohesion (c) of the contaminated soil without bacteria cured in the cementing solution, so it increased up to 17.5 kPa, while the internal friction increased up to 29.28° at 28 days. This may be due to the chemical reactions between cementing solution and soil elements. The shear strength of lime-treated clay is a function of lime content. This is because the lime content affects the strength of expansion and hence expansion behavior of the cement joints [30]. However, Ali et al. [31] found that the cured lime-soil mixtures displayed a larger angle of friction’ Φ′ than the untreated soil, among three metal elements, lead was prominently dominating. The increase in the shear strength and friction angle of the stabilized soil is due to a production of the abovementioned cementitious materials in the soil-stabilizer matrix.
3.2 Micro-structural characteristics
X-ray diffraction (XRD) and Scanning Electronic Microscope (SEM) tests were performed on the untreated and treated soil to supplement the experimental results and assist in the interpretation of the observed behaviors. Due to the formation of calcite crystals, SEM analysis revealed an increase in the matrix structure bonding that was confirmed by XRD analysis, with a significant decrease in the size of pores between particles. Figures 6 and 7 show SEM and XRD, respectively. Toxic metal ions may be combined into CaCO3 by substituting Ca2+ or may coprecipitate within CaCO3 lattice structure [16].

SEM confirm the presence of biomineralized crystal formations as a result of MICP (a) soil before treated, (b) lead polluted soil with Cementation reagent, (c, d, e, f) lead polluted soil treated with bacterial solution and Cementation reagent

XRD of soil (a) soil before treatment (b) lead polluted soil with Cementation reagent (c) lead polluted soil with the bacterial solution and Cementation reagent
4 Conclusions
One of the biological soil improvement techniques is the microbial-induced calcite precipitation (MICP). This research was performed to scrutinize changes in the engineering characteristics of lead polluted silty sand soil under two variables, including bacterial solution concentration and curing time. Throughout the study, the Bacillus subtilis bacteria had a positive effect on the soil geoenvironmental properties, which was observed by:
Unconfined compressive strength (UCS) increased for all concentrations of bacterial solution after 28 days of the treatment period even with the soil of 25% bacterial solution that represented a sharper strength increase than others within the initial days.
The cohesion increased with the increase in the bacterial solution and curing time.
The angle of internal friction increased with the increase in the bacteria solution and time up to 14 days, then keeping increased for bacterial solution of 15% and 20% with a slight decrease for 25% at 28 days, but higher than that before treatment.
Polluted soil, without bacterial solution, showed a slight increase in cohesion, unconfined strength, and angle of internal friction within curing time.
SEM and XRD analysis revealed an increase in the matrix structure bonding because of calcium carbonate production and lead compounds, which was responsible for the positive impact on soil strength and lead adaption from soluble to insoluble form resulting in a less poisonous element.
Acknowledgement
The authors thank the instructors of Mustansiriyah University’s College of Engineering, Ministry of Construction, Housing, Municipalities and Public Works.
Funding information: The authors state no funding involved.
Author contributions: All authors have accepted responsibility for the entire content of this manuscript and approved its submission.
Conflict of interest: The authors state no conflict of interest.
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© 2022 Zahraa Samer Hadi et al., published by De Gruyter
This work is licensed under the Creative Commons Attribution 4.0 International License.
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- Numerical simulation to the effect of applying rationing system on the stability of the Earth canal: Birmana canal in Iraq as a case study
- Assessing the vibration response of foundation embedment in gypseous soil
- Analysis of concrete beams reinforced by GFRP bars with varying parameters
- One dimensional normal consolidation line equation
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- Research Articles
- Calcium carbonate nanoparticles of quail’s egg shells: Synthesis and characterizations
- Effect of welding consumables on shielded metal arc welded ultra high hard armour steel joints
- Stress-strain characteristics and service life of conventional and asphaltic underlayment track under heavy load Babaranjang trains traffic
- Corrigendum to: Statistical mechanics of cell decision-making: the cell migration force distribution
- Prediction of bearing capacity of driven piles for Basrah governatore using SPT and MATLAB
- Investigation on microstructural features and tensile shear fracture properties of resistance spot welded advanced high strength dual phase steel sheets in lap joint configuration for automotive frame applications
- Experimental and numerical investigation of drop weight impact of aramid and UHMWPE reinforced epoxy
- An experimental study and finite element analysis of the parametric of circular honeycomb core
- The study of the particle size effect on the physical properties of TiO2/cellulose acetate composite films
- Hybrid material performance assessment for rocket propulsion
- Design of ER damper for recoil length minimization: A case study on gun recoil system
- Forecasting technical performance and cost estimation of designed rim wheels based on variations of geometrical parameters
- Enhancing the machinability of SKD61 die steel in power-mixed EDM process with TGRA-based multi criteria decision making
- Effect of boron carbide reinforcement on properties of stainless-steel metal matrix composite for nuclear applications
- Energy absorption behaviors of designed metallic square tubes under axial loading: Experiment-based benchmarking and finite element calculation
- Synthesis and study of magnesium complexes derived from polyacrylate and polyvinyl alcohol and their applications as superabsorbent polymers
- Artificial neural network for predicting the mechanical performance of additive manufacturing thermoset carbon fiber composite materials
- Shock and impact reliability of electronic assemblies with perimeter vs full array layouts: A numerical comparative study
- Influences of pre-bending load and corrosion degree of reinforcement on the loading capacity of concrete beams
- Assessment of ballistic impact damage on aluminum and magnesium alloys against high velocity bullets by dynamic FE simulations
- On the applicability of Cu–17Zn–7Al–0.3Ni shape memory alloy particles as reinforcement in aluminium-based composites: Structural and mechanical behaviour considerations
- Mechanical properties of laminated bamboo composite as a sustainable green material for fishing vessel: Correlation of layer configuration in various mechanical tests
- Singularities at interface corners of piezoelectric-brass unimorphs
- Evaluation of the wettability of prepared anti-wetting nanocoating on different construction surfaces
- Review Article
- An overview of cold spray coating in additive manufacturing, component repairing and other engineering applications
- Special Issue: Sustainability and Development in Civil Engineering - Part I
- Risk assessment process for the Iraqi petroleum sector
- Evaluation of a fire safety risk prediction model for an existing building
- The slenderness ratio effect on the response of closed-end pipe piles in liquefied and non-liquefied soil layers under coupled static-seismic loading
- Experimental and numerical study of the bulb's location effect on the behavior of under-reamed pile in expansive soil
- Procurement challenges analysis of Iraqi construction projects
- Deformability of non-prismatic prestressed concrete beams with multiple openings of different configurations
- Response of composite steel-concrete cellular beams of different concrete deck types under harmonic loads
- The effect of using different fibres on the impact-resistance of slurry infiltrated fibrous concrete (SIFCON)
- Effect of microbial-induced calcite precipitation (MICP) on the strength of soil contaminated with lead nitrate
- The effect of using polyolefin fiber on some properties of slurry-infiltrated fibrous concrete
- Typical strength of asphalt mixtures compacted by gyratory compactor
- Modeling and simulation sedimentation process using finite difference method
- Residual strength and strengthening capacity of reinforced concrete columns subjected to fire exposure by numerical analysis
- Effect of magnetization of saline irrigation water of Almasab Alam on some physical properties of soil
- Behavior of reactive powder concrete containing recycled glass powder reinforced by steel fiber
- Reducing settlement of soft clay using different grouting materials
- Sustainability in the design of liquefied petroleum gas systems used in buildings
- Utilization of serial tendering to reduce the value project
- Time and finance optimization model for multiple construction projects using genetic algorithm
- Identification of the main causes of risks in engineering procurement construction projects
- Identifying the selection criteria of design consultant for Iraqi construction projects
- Calibration and analysis of the potable water network in the Al-Yarmouk region employing WaterGEMS and GIS
- Enhancing gypseous soil behavior using casein from milk wastes
- Structural behavior of tree-like steel columns subjected to combined axial and lateral loads
- Prospect of using geotextile reinforcement within flexible pavement layers to reduce the effects of rutting in the middle and southern parts of Iraq
- Ultimate bearing capacity of eccentrically loaded square footing over geogrid-reinforced cohesive soil
- Influence of water-absorbent polymer balls on the structural performance of reinforced concrete beam: An experimental investigation
- A spherical fuzzy AHP model for contractor assessment during project life cycle
- Performance of reinforced concrete non-prismatic beams having multiple openings configurations
- Finite element analysis of the soil and foundations of the Al-Kufa Mosque
- Flexural behavior of concrete beams with horizontal and vertical openings reinforced by glass-fiber-reinforced polymer (GFRP) bars
- Studying the effect of shear stud distribution on the behavior of steel–reactive powder concrete composite beams using ABAQUS software
- The behavior of piled rafts in soft clay: Numerical investigation
- The impact of evaluation and qualification criteria on Iraqi electromechanical power plants in construction contracts
- Performance of concrete thrust block at several burial conditions under the influence of thrust forces generated in the water distribution networks
- Geotechnical characterization of sustainable geopolymer improved soil
- Effect of the covariance matrix type on the CPT based soil stratification utilizing the Gaussian mixture model
- Impact of eccentricity and depth-to-breadth ratio on the behavior of skirt foundation rested on dry gypseous soil
- Concrete strength development by using magnetized water in normal and self-compacted concrete
- The effect of dosage nanosilica and the particle size of porcelanite aggregate concrete on mechanical and microstructure properties
- Comparison of time extension provisions between the Joint Contracts Tribunal and Iraqi Standard Bidding Document
- Numerical modeling of single closed and open-ended pipe pile embedded in dry soil layers under coupled static and dynamic loadings
- Mechanical properties of sustainable reactive powder concrete made with low cement content and high amount of fly ash and silica fume
- Deformation of unsaturated collapsible soils under suction control
- Mitigation of collapse characteristics of gypseous soils by activated carbon, sodium metasilicate, and cement dust: An experimental study
- Behavior of group piles under combined loadings after improvement of liquefiable soil with nanomaterials
- Using papyrus fiber ash as a sustainable filler modifier in preparing low moisture sensitivity HMA mixtures
- Study of some properties of colored geopolymer concrete consisting of slag
- GIS implementation and statistical analysis for significant characteristics of Kirkuk soil
- Improving the flexural behavior of RC beams strengthening by near-surface mounting
- The effect of materials and curing system on the behavior of self-compacting geopolymer concrete
- The temporal rhythm of scenes and the safety in educational space
- Numerical simulation to the effect of applying rationing system on the stability of the Earth canal: Birmana canal in Iraq as a case study
- Assessing the vibration response of foundation embedment in gypseous soil
- Analysis of concrete beams reinforced by GFRP bars with varying parameters
- One dimensional normal consolidation line equation