Home Crystal structure of methyl 3-(1H-naphtho[1,8-de][1,3,2]diazaborinin-2(3H)-yl)benzoate, C18H15BN2O2
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Crystal structure of methyl 3-(1H-naphtho[1,8-de][1,3,2]diazaborinin-2(3H)-yl)benzoate, C18H15BN2O2

  • Qiang Ma ORCID logo and Zong-Cheng Miao EMAIL logo
Published/Copyright: June 7, 2021

Abstract

C18H15BN2O2, monolinic, P21/n (no. 14), a = 13.61(2) Å, b = 7.389(11) Å, c = 16.34(2) Å, β = 113.91(2)°, V = 1502(4) Å3, Z = 4, R gt (F) = 0.0544, wR ref (F 2) = 0.1651, T = 273 K.

CCDC no.: 2079276

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.12 × 0.10 × 0.10 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.09 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θ max, completeness: 27.5°, 97%
N(hkl)measured, N(hkl)unique, R int: 9847, 3446, 0.054
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 1995
N(param)refined: 209
Programs: Bruker [1], Olex2 [2], SHELX [3], [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
B1 0.3328 (2) 0.7297 (3) 0.41103 (16) 0.0368 (6)
C1 0.20274 (18) 0.7487 (3) 0.48247 (14) 0.0394 (5)
C2 0.1014 (2) 0.7246 (3) 0.47989 (17) 0.0539 (6)
H2A 0.045896 0.686866 0.427071 0.065*
C3 0.0808 (2) 0.7566 (4) 0.55683 (19) 0.0650 (8)
H3 0.012106 0.737255 0.554374 0.078*
C4 0.1602 (2) 0.8154 (4) 0.63441 (17) 0.0599 (7)
H4 0.144871 0.836093 0.684171 0.072*
C5 0.2658 (2) 0.8456 (3) 0.64055 (15) 0.0450 (6)
C6 0.3504 (2) 0.9139 (3) 0.71885 (15) 0.0527 (7)
H6 0.337944 0.936839 0.769798 0.063*
C7 0.4500 (2) 0.9461 (3) 0.71995 (15) 0.0501 (6)
H7 0.503357 0.995696 0.770914 0.060*
C8 0.47331 (19) 0.9054 (3) 0.64514 (14) 0.0435 (6)
H8 0.541887 0.926049 0.647612 0.052*
C9 0.39440 (17) 0.8352 (3) 0.56859 (13) 0.0365 (5)
C10 0.28805 (18) 0.8092 (3) 0.56359 (13) 0.0374 (5)
C11 0.36102 (17) 0.6797 (3) 0.32931 (13) 0.0365 (5)
C12 0.45549 (18) 0.5862 (3) 0.34277 (14) 0.0417 (5)
H12 0.501184 0.553513 0.400757 0.050*
C13 0.48375 (18) 0.5402 (3) 0.27264 (14) 0.0419 (5)
H13 0.546657 0.475813 0.283929 0.050*
C14 0.41833 (17) 0.5901 (3) 0.18644 (14) 0.0390 (5)
H14 0.437666 0.561703 0.139502 0.047*
C15 0.32252 (17) 0.6840 (3) 0.16959 (13) 0.0357 (5)
C16 0.29385 (18) 0.7259 (3) 0.24082 (14) 0.0378 (5)
H16 0.229284 0.785212 0.229200 0.045*
C17 0.25050 (19) 0.7392 (3) 0.07734 (14) 0.0386 (5)
C18 0.2414 (2) 0.7974 (4) −0.06885 (15) 0.0571 (7)
H18A 0.282696 0.773588 −0.103397 0.086*
H18B 0.224427 0.924008 −0.071956 0.086*
H18C 0.176122 0.728251 −0.092427 0.086*
N1 0.41435 (15) 0.7893 (2) 0.49340 (11) 0.0410 (5)
H1 0.479147 0.797530 0.497292 0.049*
N2 0.22806 (15) 0.7175 (2) 0.40874 (11) 0.0417 (5)
H2 0.176466 0.689001 0.358737 0.050*
O1 0.15652 (14) 0.7757 (2) 0.05299 (11) 0.0575 (5)
O2 0.30327 (13) 0.7467 (2) 0.02341 (10) 0.0506 (5)

Source of material

In air, {bis(pinacolato)diboron}-{naphthalene-1,8-diamino boronamide} (0.1 mmol, 1.0 eq.), methyl 3-aminobenzoate (0.2 mmol, 2.0 eq.), TBAI (Tetrabutylammonium iodide, 0.01 eq.), NaOAc (0.15 eq.), and dibenzoyl peroxide (BPO) (0.01 eq.) were sequentially weighed and added to a Schlenk tube containing a magnetic stir bar. The vessel was evacuated and refilled with nitrogen for three times. tBuONO (0.2 eq.) and MeCN (0.6 mL) were added in turn under a N2 atmosphere using syringes through a septum. The reaction mixture was then vigorously stirred at 80 °C. The resulting mixture was filtered through a pad of Celite, and the filter cake was washed with ethyl acetate (3 mL × 2). The combined filtrate was evaporated to dryness and the residue was purified by column chromatography to yield the desired product as a colorless solid.

Experimental details

All the H atoms on the benzene rings were placed geometrically and refined without any constraints or restraints.

Comment

In recent years, organoboron reagents have aroused the research interest of chemists, because of their widely use in synthetic chemistry, medicinal chemistry, and material chemistry [5]. Some of these compounds can be used to construct new C–C or C–X bonds [6], [7]. The very common boron-containing reagent Bpin {bis(pinacolato)diboron} has a relatively high activity, and its activity cannot be easily controlled during the reaction. Therefore, chemists developed the Bdan group (naphthalene-1,8-diamino boronamide) which is robust enough to avoid the formation of undesirable by-products in the Suzuki–Miyaura coupling reaction. By-products can be hydrolyzed by placing in an acidic aqueous solution to form the corresponding boric acid. The above characteristics make the Bdan groups very important as the building blocks in several synthethic protocols [811]. So here we report the crystal structure of the title compound (cf. figure).

There is one molecule in the asymmetric unit (see the figure). All bonds and angles in the crystal structure are within the normal range.


Corresponding author: Zong-Cheng Miao, Xi’an Key Laboratory of Advanced Photo-Electronics Materials and Energy Conversion Device, School of Science, Xijing University, Xi’an, Shaanxi 710123, China, E-mail:

Funding source: Natural Science Basic Research Plan in Shaanxi Province of China

Award Identifier / Grant number: 2020-JM-643

Funding source: Special Scientific Research Project of Shaanxi Education Department

Award Identifier / Grant number: 18JK1024

Funding source: Science Research Foundation of Xijing University

Award Identifier / Grant number: XJ17T01

Funding source: Youth Innovation Team of Shaanxi Universities

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Natural Science Basic Research Plan in Shaanxi Province of China (No. 2020-JM-643), the Special Scientific Research Project of Shaanxi Education Department (18JK1024), and the Science Research Foundation of Xijing University (XJ17T01) and the Youth Innovation Team of Shaanxi Universities.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

1. Bruker. APEX-2, SAINT+ (version 6.02) (Includes XPREP and SADABS); Bruker AXS Inc.: Madison, WI, USA, 2016.Search in Google Scholar

2. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K., Puschmann, H. OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 2009, 42, 339–341; https://doi.org/10.1107/s0021889808042726.Search in Google Scholar

3. Sheldrick, G. M. A short history of SHELX. Acta Crystallogr. 2008, A64, 112–122; https://doi.org/10.1107/s0108767307043930.Search in Google Scholar PubMed

4. Sheldrick, G. M. Crystal structure refinement with SHELXL. Acta Crystallogr. 2015, C71, 3–8; https://doi.org/10.1107/s2053229614024218.Search in Google Scholar

5. Hall, D. J. Boronic Acids; Wiley: Weinheim, Germany, 2011.10.1002/9783527639328Search in Google Scholar

6. Lennox, A. J., Lloyd-Jones, G. C. Selection of boron reagents for Suzuki–Miyaura coupling. Chem. Soc. Rev. 2014, 43, 412–413; https://doi.org/10.1039/c3cs60197h.Search in Google Scholar PubMed

7. Fyfe, J. W. B., Watson, A. J. B. Recent development in organoboron chemistry: old dogs, new tricks. Inside Chem. 2017, 3, 31–55; https://doi.org/10.1016/j.chempr.2017.05.008.Search in Google Scholar

8. Slabber, C. A., Grimmer, C., Akerman, M. P., Robinson, R. S. 2- Phenylnaphtho[1,8-de[1,3,2]diazaborinane. Acta Crystallogr. 2011, E67, o1995; https://doi.org/10.1107/s1600536811026985.Search in Google Scholar PubMed PubMed Central

9. Ding, S., Zhu, M., Miao, Z. The crystal structure of 2-(4-bromophenyl)-2,3- dihydro-1H-naphtho[1,8-de][1,3,2]diazaborinine, C16H12BBrN2. Z. Kristallogr. N. Cryst. Struct. 2021, 236, 383–384; https://doi.org/10.1515/ncrs-2020-0556.Search in Google Scholar

10. Xu, L., Zhang, S., Li, P. Boron-selective reactions as powerful tools or modular synthesis of synthesis of diverse complex molecules. Chem. Soc. Rev. 2015, 44, 8848–8858; https://doi.org/10.1039/c5cs00338e.Search in Google Scholar PubMed

11. Takaya, J., Iwasawa, N. Catalytic, direct synthesis of bis(boronate) compounds. ACS Catal. 2012, 2, 1993–2006; https://doi.org/10.1021/cs300320u.Search in Google Scholar

Received: 2021-04-21
Accepted: 2021-05-17
Published Online: 2021-06-07
Published in Print: 2021-09-27

© 2021 Qiang Ma and Zong-Cheng Miao, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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