Home The crystal structure of (2-(4-chlorophenyl)-5-methyl-1,3-dioxan-5-yl)methanol, C12H15ClO3
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The crystal structure of (2-(4-chlorophenyl)-5-methyl-1,3-dioxan-5-yl)methanol, C12H15ClO3

  • Long-Sheng Zou , Zhong-Yan Li and Lin Yuan ORCID logo EMAIL logo
Published/Copyright: July 15, 2021

Abstract

C12H15ClO3, orthorhombic, P212121 (no. 19), a = 5.788(2) Å, b = 11.079(4) Å, c = 18.916(7) Å, V = 1213.0(8) Å3, Z = 4, R gt (F) = 0.0559, wR ref (F2) = 0.1898, T = 296(2) K.

CCDC no.: 2091997

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.45 × 0.40 × 0.36 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.30 mm−1
Diffractometer, scan mode: φ and ω
θmax, completeness: 27.6°, 99%
N(hkl)measured, N(hkl)unique, Rint: 13,039, 2765, 0.041
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 2291
N(param)refined: 147
Programs: Bruker [1], SHELX [2, 3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
C1 0.5084 (5) 0.8226 (2) 0.90060 (13) 0.0415 (6)
H1 0.4109 0.8460 0.9407 0.050*
C2 0.6044 (5) 0.6979 (2) 0.91251 (13) 0.0399 (6)
C3 0.8148 (5) 0.6631 (3) 0.88498 (16) 0.0481 (7)
H3 0.9044 0.7188 0.8604 0.058*
C4 0.8942 (6) 0.5456 (3) 0.89356 (17) 0.0495 (7)
H4 1.0343 0.5218 0.8739 0.059*
C5 0.7624 (6) 0.4651 (2) 0.93150 (15) 0.0480 (7)
C6 0.5547 (7) 0.4976 (3) 0.95972 (16) 0.0548 (8)
H6 0.4662 0.4419 0.9846 0.066*
C7 0.4779 (6) 0.6153 (3) 0.95061 (15) 0.0487 (7)
H7 0.3383 0.6388 0.9707 0.058*
C8 0.4492 (5) 1.0337 (3) 0.81919 (15) 0.0434 (6)
C9 0.6063 (7) 1.0251 (3) 0.88326 (15) 0.0506 (7)
H9A 0.7357 1.0798 0.8772 0.061*
H9B 0.5216 1.0501 0.9250 0.061*
C10 0.2685 (6) 0.9340 (3) 0.8254 (2) 0.0575 (8)
H10A 0.1637 0.9528 0.8638 0.069*
H10B 0.1791 0.9304 0.7820 0.069*
C11 0.5880 (6) 1.0152 (3) 0.75207 (16) 0.0533 (7)
H11A 0.6597 0.9361 0.7535 0.064*
H11B 0.4839 1.0168 0.7119 0.064*
C12 0.3282 (7) 1.1572 (3) 0.8195 (2) 0.0667 (9)
H12A 0.2507 1.1687 0.8638 0.100*
H12B 0.2174 1.1603 0.7817 0.100*
H12C 0.4409 1.2199 0.8130 0.100*
Cl1 0.8634 (2) 0.31890 (7) 0.94291 (6) 0.0785 (4)
O1 0.3740 (4) 0.81831 (18) 0.83805 (11) 0.0490 (5)
O2 0.6920 (4) 0.90435 (17) 0.89350 (10) 0.0465 (5)
O3 0.7614 (5) 1.1034 (3) 0.74217 (16) 0.0745 (8)
H3A 0.7036 1.1645 0.7253 0.112*

Source of material

2-(Hydroxymethyl)-2-methylpropane-1,3-diol (1.32 g, 11 mmol), 4-chlorobenzaldehyde (1.40 g, 10 mmol), N,N-dimethytformamide (5.0 mL), cyclohexane (10.0 mL) and p-toluene sulfonic acid (0.15 g) were heated and stirred at 388 K for 5 h, then sodium bicarbonate (0.09 g) was added to dissolve the residue. After the solution was washed with saturated salt water (10 mL*3), and dried with anhydrous sodium sulfate. The resulting solution was filtered and evaporated, and the product was recrystallized from cyclohexane and ethyl acetate to afford colorless crystals (1.94 g, yield 80%).

Experimental details

All hydrogen atoms were positioned using the standard options of the SHELX system. The Uiso values of the hydrogen atoms of methyl group was set to 1.5 Ueq(C) and the Uiso values of all other hydrogen atoms were set to 1.2 Ueq(C).

Comment

Polyfunctional branched compounds are a class of compounds with a wide range of applications [4], [5], [6], [7]. Acetal compounds are important and were used widely in fragrances and food flavors [8, 9]. Acetal compounds are stable in neutral and alkaline conditions and will degrade and generate a material of small molecules under acidic conditions. Herein, a novel acetal compound was synthesized and characterized by single-crystal X-ray diffraction [1], [2], [3].

There is one molecule in the asymmetric unit (see the figure). The torsion angles of C(9)–O(2)–C(1)–O(1), C(10)–O(1)–C(1)–O(2) and C(1)–O(2)–C(9)–C(8) are 63.1(3), −63.5(3) and −57.4(3), respectively, indicating that the 1,3-dioxane exhibits a chair conformation. The phenyl ring occupies the equatorial bond at C(1) atom (see the figure). All geometric parameters are in the expected ranges [10, 11].


Corresponding author: Lin Yuan, College of Chemistry and Bioengineering, Hunan University of Science and Engineering, Yongzhou, Hunan 425199, P. R. China, E-mail:

Funding source: Science and Technology Project of Guilin City

Award Identifier / Grant number: 20180106-1

Funding source: Doctor Project of Guilin University of Aerospace Technology

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was financially supported by Science and Technology Project of Guilin City (20180106-1), Doctor Project of Guilin University of Aerospace Technology.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

1. Bruker. APEX3, SAINT–Plus; XPREP. Bruker AXS Inc.: Madison, Wisconsin, USA, 2016.Search in Google Scholar

2. Sheldrick, G. M. SHELXTL – integrated space-group and crystal-structure determination. Acta Crystallogr. 2015, A71, 3–8; https://doi.org/10.1107/s2053273314026370.Search in Google Scholar PubMed PubMed Central

3. Sheldrick, G. M. Crystal structure refinement with SHELXL. Acta Crystallogr. 2015, C71, 3–8; https://doi.org/10.1107/s2053229614024218.Search in Google Scholar

4. Yuan, X.-Y., Zhang, M., Yuan, L., Li, Z.-Y. Crystal structure of diethyl 2-(4-chlorophenyl)-1,3-dioxane-5,5-dicarboxylate, C16H19ClO6. Z. Kristallogr. N. Cryst. Struct. 2013, 232, 1041–1042.10.1515/ncrs-2017-0175Search in Google Scholar

5. Zhang, M., Ou, G.-C., Yuan, L., Jia, G.-K., Yuan, X.-Y. Synthesis and crystal structure of 2-(4-chlorophenyl)-5-ethyl-1,3-dioxane-5-carboxylic acid. Asian J. Chem. 2014, 26, 6401–6403; https://doi.org/10.14233/ajchem.2014.16389.Search in Google Scholar

6. Rosas, F., Lezama, J., Mora, J. R., Maldonado, A., Cordova, T., Chuchani, G. Kinetics and mechanisms of the thermal decomposition of 2-methyl-1,3-dioxolane, 2,2-dimethyl-1,3-dioxolane, and cyclopentanone ethylene ketal in the gas phase. combined experimental and dft study. J. Phys. Chem. 2012, 116, 9228–9237; https://doi.org/10.1021/jp305179n.Search in Google Scholar PubMed

7. Wang, G. W., Yuan, X. Y., Liu, Y. C., Lei, X. G., Guo, Q. X. Synthesis, characterization and hydrolytic property of cleavable surfactant with two 1,3-dioxane rings. Indian J. Chem., Sect. B 1996, 35, 583–585.10.1002/chin.199634156Search in Google Scholar

8. Alemdar, N., Erciyes, A. T., Bicak, N. Preparation of unsaturated polyesters using boric acid as mild catalyst and their sulfonated derivatives as new family of degradable polymer surfactants. Polymer 2010, 51, 5044–5050; https://doi.org/10.1016/j.polymer.2010.08.066.Search in Google Scholar

9. Yuan, X. Y., Yang, N. F., Luo, H. A., Liu, Y. J. Microwave syntheses of disulfonate salt-type cleav-able surfactants with a 1,3-dioxane ring. Chin. J. Org. Chem. 2005, 25, 1049–1052.Search in Google Scholar

10. Zhang, M., Jia, G. K., Yuan, L., Yuan, X. Y. Crystal structure of 2-(4- chlorophenyl)-5-methyl-1,3-dioxane-5-carboxylic acid, C12H13ClO4. Z. Kristallogr. N. Cryst. Struct. 2013, 22, 393–394https://doi.org/10.1524/ncrs.2013.0197.Search in Google Scholar

11. Yuan, X.-Y., Yuan, L., Zhang, M., Li, Z.-Y. Crystal structure of (5-ethyl-2- (4-methoxyphenyl)-1,3-dioxan-5-yl)methanol, C14H20O4. Z. Kristallogr. N. Cryst. Struct. 2018, 233, 937–938; https://doi.org/10.1515/ncrs-2018-0114.Search in Google Scholar

Received: 2021-06-05
Accepted: 2021-06-28
Published Online: 2021-07-15
Published in Print: 2021-09-27

© 2021 Long-Sheng Zou et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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