Home Physical Sciences Crystal structure of catena-poly[diaqua-bis(μ2-ethane-1,2-diyl-bis(pyridine-3-carboxylate-κ2N:N′))copper(II)] dinitrate, C28H28CuN6O16
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Crystal structure of catena-poly[diaqua-bis(μ2-ethane-1,2-diyl-bis(pyridine-3-carboxylate-κ2N:N′))copper(II)] dinitrate, C28H28CuN6O16

  • Iván Brito EMAIL logo , Alejandro Cárdenas , Michael Bolte and Jaime Llanos
Published/Copyright: January 11, 2017

Abstract

C28H28CuN6O16, triclinic, P1̅, (no. 2), a = 7.3118(7) Å, b = 10.0597(8) Å, c = 11.2579(10) Å, α = 92.109(7)°, β = 105.804(7)°, γ = 98.416(7)°, V = 785.63(12)Å3, Z = 1, Rgt(F) = 0.042, wRref(F2) = 0.095, T = 173(2) K.

CCDC no.:: 883341

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Light blue plate
Size:0.25 × 0.19 × 0.09 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:7.8 cm−1
Diffractometer, scan mode:IPDS II, ω-scans
2θmax, completeness:51.2°, >98%
N(hkl)measured, N(hkl)unique, Rint:8041, 2918, 0.066
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2226
N(param)refined:235
Programs:SHELX [4], Stoe X-AREA [5], PLATON [6], Multi-scan absorption correction [7]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cu10.50000.00000.00000.02006(16)
C10.2579(4)0.2108(3)0.3625(3)0.0244(6)
O10.0967(3)0.1960(2)0.2954(2)0.0377(6)
O20.3206(3)0.2916(2)0.4681(2)0.0271(5)
C20.1811(5)0.3675(3)0.4964(3)0.0310(7)
H2A0.08400.30760.52460.037*
H2B0.11400.40950.42220.037*
C30.2928(5)0.4739(3)0.5973(3)0.0279(7)
H3A0.39630.52910.57100.033*
H3B0.20660.53400.61580.033*
O30.3749(3)0.40688(19)0.7058(2)0.0264(5)
O40.5727(4)0.5992(2)0.7885(3)0.0469(7)
C40.5167(5)0.4820(3)0.7940(3)0.0254(7)
C110.4137(4)0.1429(3)0.3400(3)0.0198(6)
C120.3929(4)0.0949(3)0.2188(3)0.0220(6)
H120.27960.10500.15640.026*
N130.5269(4)0.0348(2)0.1865(2)0.0219(5)
C140.6839(4)0.0180(3)0.2770(3)0.0239(6)
H140.7777−0.02690.25590.029*
C150.7138(5)0.0635(3)0.3991(3)0.0257(6)
H150.82580.04910.46050.031*
C160.5796(4)0.1302(3)0.4313(3)0.0245(6)
H160.60060.16640.51390.029*
C210.5991(4)0.4043(3)0.8991(3)0.0221(6)
C220.5277(4)0.2696(3)0.9040(3)0.0224(6)
H220.41990.22700.83910.027*
N230.6048(3)0.1977(2)0.9966(2)0.0214(5)
C240.7577(4)0.2598(3)1.0881(3)0.0270(7)
H240.81490.20911.15370.032*
C250.8345(5)0.3940(3)1.0905(3)0.0299(7)
H250.94030.43491.15730.036*
C260.7553(4)0.4676(3)0.9944(3)0.0254(7)
H260.80650.55980.99340.030*
N11−0.0596(4)0.2595(3)−0.2635(3)0.0363(7)
O110.0037(5)0.2673(3)−0.1473(2)0.0526(7)
O12−0.1320(4)0.3540(2)−0.3170(3)0.0503(7)
O13−0.0446(5)0.1571(3)−0.3224(3)0.0568(8)
O1W0.1524(5)0.0474(3)−0.0595(2)0.0481(7)
H1WA0.094(5)0.111(3)−0.092(4)0.072*
H1WBa0.08430.0018−0.01160.072*
H1WCa0.0885−0.0116−0.11450.072*
  1. aOccupancy: 0.50.

Source of material

A solution of Cu(NO3)2 (18.76 mg, 0.1 mmol) in water was slowly added to a solution of the ligand ethane-1,2-diyl-bis(pyridine-3-carboxylate) (27.2 mg, 0.1 mmol) in THF (4 mL). Light blue single crystals were obtained after a few days (65%).

Experimental details

All H atoms were located in the difference Fourier map, but refined with fixed individual displacement parameters, using a riding model with C—H distances of 0.95 Å (for aromatic rings), 0.99 Å (for CH2 groups), with Uiso(H) values of 1.2Ueq(C) (for CH in aromatic and CH2). One H atom of the water molecule was refined freely with O1W—H1WA distance of 0.864(10) Å but the other one is disordered with occupancy fixed at 50%. The O—H bond distances are O1W—H1WB 0.9206 Å and O1W—H1WC 0.8292 Å.

Discussion

The design of polymeric organic-inorganic materials with novel topologies and structural motifs is of current interest in the field of coordination chemistry [1]. This paper forms part of our continuing study of the synthesis, structural characterization and physical properties of coordination polymers [2]. The Cu atom exists in a square-planar CuN4 coordination geometry; it lies on an inversion center. The bond distances and angles Cu—N and N—Cu—N ranging from 2.030(2)–2.066(2) Å; 88.90(9)–180.00(13)° respectively. The ligand has a gauche conformation and links two Cu(II) atoms using its two pyridine groups to give a 1D helical structure. The most obvious difference between the ligand of the title compound and the uncoordinated ligand [3] is the angle between the planes of pyridine rings [77.08(15)° and 44.71(19)°], respectively which is a consequence of the flexible organic components of the title compound. One intramolecular and one intermolecular hydrogen bond interactions is observed between the water ligand and nitrate anion; O1W—H1WA ⋯O1WBi and O1W—H1WA ⋯O11 [symmetry code (i) −x, −y, −z].

References

1 Blake, A. J.; Champness, N. R.; Chung, S. S.; Li, W. S.; Schröder, M.: In situ ligand synthesis and construction of an unprecedented three-dimensional array with silver(I): a new approach to inorganic crystal engineering. Chem. Commun. (1997) 1675–1676.10.1039/a702972aSearch in Google Scholar

2 Vallejos, J.; Brito, I.; Cárdenas, A.; Bolte, M.; Conejeros, S.; Alemany, P.; Llanos, J.: Self-assembly of discrete metallocycles versus coordination polymers based on Cu(I) and Ag(I) ions and flexible ligands: structural diversification and luminescent properties. Polymers 8 (2016) 2–16.10.3390/polym8020046Search in Google Scholar PubMed PubMed Central

3 Brito, I.; Vallejos, J.; López-Rodríguez, M.; Cárdenas, A.: Ethane-1,2-diylbis(pyridine-3-carboxylate). Acta Crystallogr. E66 (2010) o114.10.1107/S1600536809052106Search in Google Scholar PubMed PubMed Central

4 Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

5 Stoe & Cie. X-AREA. Stoe & Cie, Darmstadt, Germany, 2001.Search in Google Scholar

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7 Blessing, R. H.: An empirical correction for absorption anisotropy. Acta Crystallogr. A51 (1995) 33–38.10.1107/S0108767394005726Search in Google Scholar PubMed

Received: 2016-7-12
Accepted: 2016-12-10
Published Online: 2017-1-11
Published in Print: 2017-3-1

©2017 Iván Brito et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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