Startseite The crystal structure of 2,3,4-trihydroxybenzoic- acid—pyrazine-2-carboxamide—water (1/1/1), C12H13N3O7
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The crystal structure of 2,3,4-trihydroxybenzoic- acid—pyrazine-2-carboxamide—water (1/1/1), C12H13N3O7

  • Cheng-Jun Jiang ORCID logo EMAIL logo , Zhi-Hua Wang , Ying-Fan Xia ORCID logo , Chao-Feng Li , Shu-ting Lin und Jia-rong Zhang
Veröffentlicht/Copyright: 1. November 2022

Abstract

C12H13N3O7, triclinic, P 1 (no. 2), a = 6.9878(9) Å, b = 7.0956(8) Å, c = 13.8113(15) Å, α = 88.745(5)°, β = 87.764(5)°, γ = 75.785(5)°, V = 663.27(14) Å3, Z = 2, Rgt (F) = 0.0455, wRref (F 2) = 0.1264, T = 296.15 K.

CCDC no.: 2206395

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless needle
Size: 0.32 × 0.07 × 0.04 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.13 mm−1
Diffractometer, scan mode: Bruker D8 Venture, φ and ω
θ max, completeness: 27.3°, >99%
N(hkl)measured, N(hkl)unique, R int: 14,081, 2942, 0.045
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 2220
N(param)refined: 206
Programs: Bruker [1], Olex2 [2], SHELX [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
O1 0.6668 (2) −0.30921 (18) 0.46362 (9) 0.0527 (4)
N1 0.8304 (2) −0.50080 (18) 0.23003 (10) 0.0343 (3)
N2 0.6535 (2) −0.11898 (19) 0.17636 (11) 0.0387 (3)
N3 0.8308 (3) −0.6110 (2) 0.42042 (12) 0.0549 (5)
H3A 0.834718 −0.653143 0.479337 0.066*
H3B 0.883113 −0.688266 0.374258 0.066*
C1 0.8259 (3) −0.4410 (2) 0.13819 (12) 0.0378 (4)
H1 0.884554 −0.529154 0.090458 0.045*
C2 0.7369 (3) −0.2517 (2) 0.11112 (13) 0.0406 (4)
H2A 0.735411 −0.216666 0.045825 0.049*
C3 0.6578 (2) −0.1767 (2) 0.26904 (13) 0.0368 (4)
H3C 0.601462 −0.087254 0.316624 0.044*
C4 0.7450 (2) −0.3677 (2) 0.29606 (12) 0.0329 (4)
C5 0.7447 (3) −0.4278 (2) 0.40087 (12) 0.0373 (4)
O2 0.0349 (2) 1.13385 (17) 0.13898 (9) 0.0511 (4)
H2 0.001750 1.189201 0.190677 0.077*
O3 0.0480 (2) 0.99593 (17) 0.32234 (9) 0.0458 (3)
H3 0.116074 0.975597 0.370300 0.069*
O4 0.2323 (2) 0.61172 (17) 0.36041 (8) 0.0459 (3)
H4 0.287508 0.495595 0.362441 0.069*
O5 0.4161 (2) 0.27699 (17) 0.28937 (9) 0.0543 (4)
O6 0.4828 (2) 0.25191 (16) 0.13007 (9) 0.0473 (3)
H6 0.534079 0.139067 0.145479 0.071*
C6 0.2969 (2) 0.6343 (2) 0.09531 (11) 0.0338 (4)
H6A 0.351009 0.555193 0.043354 0.041*
C7 0.2050 (3) 0.8262 (2) 0.07836 (12) 0.0378 (4)
H7 0.195666 0.876550 0.015498 0.045*
C8 0.1264 (2) 0.9437 (2) 0.15624 (12) 0.0349 (4)
C9 0.1367 (2) 0.8714 (2) 0.25027 (11) 0.0325 (3)
C10 0.2279 (2) 0.6758 (2) 0.26754 (11) 0.0305 (3)
C11 0.3105 (2) 0.5559 (2) 0.18910 (11) 0.0311 (3)
C12 0.4064 (3) 0.3502 (2) 0.20788 (12) 0.0366 (4)
O7 0.7327 (2) 0.0425 (2) 0.52481 (11) 0.0565 (4)
H7A 0.619630 0.121831 0.524268 0.085*
H7B 0.725268 −0.065629 0.501957 0.085*

Source of materials

The mixture of pyrazinamide and 2,3,4-trihydroxybenzoic acid with a molar ratio of 1:1 was dissolved in deionized water, and the resulting mixed solution was stirred and dissolved at a constant temperature of 50 °C to obtain a clear solution. The solution was filtered and placed in a sample vial, covered with membrane and punctured. The filtrate was slowly evaporated at room temperature to obtain crystals of the title compound.

Experimental details

Absorption corrections were applied by using multi-scan program [1]. Using Olex2 [2], the structure was solved with the Shelxt [3] structure solution program and refined with the Shelxt [4] refinement package. The H atoms were fixed, fixed U iso were set to 1.2 times of All C(H) groups and N(H,H) groups; 1.5 times of O(H) groups and O(H,H) groups.

Comment

Pyrazinamide (PZA), a first-line drug for the treatment of tuberculosis, is a class II compound in the biopharmaceutical classification system and has low bioavailability due to low solubility (15 μg/mL) during the course of treatment [5]. In recent years, drug co-crystal technology, as an emerging technology, enhances the efficacy of drugs by improving the solubility and permeability of drugs [6]. Cocrystals of pyrazinamide were obtained with 2-chloro-4-nitrophenol (CCDC: 2026376, JAJYIG), hydroxy(4-hydroxyphenyl)acetic acid (CCDC: 2026375, JAJZAZ), 3-(2-hydroxyphenyl)prop-2-enoic acid (CCDC: 2026374, JAJYOM) [7], 4-hydroxybenzoic acid (CCDC: 919367, NUVFIV) [8], 3,4-dihydroxycyclobut-3-ene-1,2-dione (CCDC: 812297, PAQNOM) [9] and so on.

In the title co-crystal (see the figure), the main forces connecting the three different molecules are several hydrogen bonds. On the one hand, the N2 atom on the pyrazine ring of the pyrazinamide molecule is a hydrogen bond acceptor, the H6 atom on the carboxyl group (O6–H6) of the 2,3,4-trihydroxybenzoic acid molecule is a hydrogen bond donor, forming an intermolecular hydrogen bond O6–H6⋯N2 [length 2.684 Å]. On the other hand, the O1 atom on the amide group of the pyrazinamide molecule is a hydrogen bond acceptor, the water molecule (O7–H7) H7 atom is a hydrogen bond donor, forming an intermolecular hydrogen bond O7–H7⋯O1 [length 2.800 Å]. The co-crystal of pyrazinamide and 2,3,4-trihydroxybenzoic acid was obtained.


Corresponding author: Cheng-Jun Jiang, School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Liuhe Road 318#, Hangzhou, China, E-mail:

Funding source: Zhejiang Provincial Natural Science Foundation of China http://dx.doi.org/10.13039/501100010248

Award Identifier / Grant number: LGJ20B060001

Acknowledgements

We gratefully acknowledge support by the Zhejiang Province Basic Public Welfare Research Project (LGJ20B060001).

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was financially supported by Zhejiang Provincial Natural Science Foundation of China (grant number: LGJ20B060001).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2022-09-21
Accepted: 2022-10-11
Published Online: 2022-11-01
Published in Print: 2023-01-27

© 2022 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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