Home Crystal structure of catena-poly[bis(µ2-3,5-bis(1-imidazolyl)pyridine-κ2 N:N′)-(µ2-3-nitrophthalato-k3 O,O′:O″)cadmium(II)] dihydrate, C30H25N11O8Cd
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Crystal structure of catena-poly[bis(µ2-3,5-bis(1-imidazolyl)pyridine-κ2 N:N′)-(µ2-3-nitrophthalato-k3 O,O′:O″)cadmium(II)] dihydrate, C30H25N11O8Cd

  • Wei-Dong Yin , Qian-Long Liu , Ya-Jing Zhao , Xiao-Ru Gong and Gui-Lian Li EMAIL logo
Published/Copyright: July 28, 2021

Abstract

C30H25N11O8Cd, orthorhombic, Pnma (no. 62), a = 17.9344(3) Å, b = 18.2722(3) Å, c = 9.5619(2) Å, V = 3133.44(10) Å3, Z = 4, R gt (F) = 0.0345, wR ref (F 2) = 0.0707, T = 293.28(10) K.

CCDC no.: 2082668

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.39 × 0.35 × 0.29 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.77 mm−1
Diffractometer, scan mode: SuperNova, ω
θ max, completeness: 28.4°, >99%
N(hkl)measured, N(hkl)unique, R int: 35240, 3786, 0.038
Criterion for I obs, N(hkl)gt: I obs > 2 σ(I obs), 3390
N(param)refined: 266
Programs: Bruker [1], Olex2 [2], SHELX [3], [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
Cd1 0.77972 (2) 0.2500 0.66270 (2) 0.03121 (8)
O1 0.65926 (11) 0.19115 (13) 0.5787 (2) 0.0705 (6)
O2 0.53199 (14) 0.2500 0.7699 (3) 0.0689 (10)
O3 0.41098 (12) 0.2500 0.7344 (2) 0.0446 (6)
O4a 0.617 (2) 0.2500 0.1207 (9) 0.063 (6)
O4Ab 0.6354 (13) 0.2370 (12) 0.1218 (8) 0.049 (4)
O5a 0.6902 (5) 0.2500 0.3096 (12) 0.063 (8)
O5Ab 0.6798 (11) 0.2888 (15) 0.3005 (12) 0.062 (4)
N1 0.75623 (11) 0.33807 (11) 0.8313 (2) 0.0376 (5)
N2 0.68961 (10) 0.40227 (10) 0.98075 (19) 0.0321 (4)
N3 0.42468 (9) 0.40188 (10) 1.07742 (19) 0.0308 (4)
N4 0.33385 (10) 0.33930 (11) 0.9786 (2) 0.0365 (4)
N5 0.58255 (12) 0.47644 (15) 1.2737 (3) 0.0609 (7)
N6 0.6294 (2) 0.2500 0.2458 (3) 0.0487 (8)
C1 0.62986 (18) 0.2500 0.5504 (3) 0.0392 (8)
C2 0.55712 (16) 0.2500 0.4701 (3) 0.0272 (6)
C3 0.48730 (16) 0.2500 0.5341 (3) 0.0273 (6)
C4 0.42285 (19) 0.2500 0.4531 (4) 0.0370 (7)
H4 0.3766 0.2500 0.4970 0.044*
C5 0.4263 (2) 0.2500 0.3078 (4) 0.0446 (9)
H5 0.3828 0.2500 0.2550 0.054*
C6 0.4940 (2) 0.2500 0.2436 (3) 0.0407 (8)
H6 0.4971 0.2500 0.1465 0.049*
C7 0.55819 (19) 0.2500 0.3238 (3) 0.0330 (7)
C8 0.47659 (17) 0.2500 0.6933 (3) 0.0321 (7)
C9 0.80166 (12) 0.38767 (14) 0.8971 (3) 0.0390 (6)
H9 0.8525 0.3930 0.8805 0.047*
C10 0.68976 (13) 0.34834 (14) 0.8837 (2) 0.0366 (5)
H10 0.6477 0.3219 0.8575 0.044*
C11 0.76203 (12) 0.42761 (14) 0.9893 (3) 0.0406 (6)
H11 0.7798 0.4647 1.0469 0.049*
C12 0.62803 (11) 0.42313 (12) 1.0641 (2) 0.0304 (5)
C13 0.55656 (11) 0.40576 (12) 1.0234 (2) 0.0314 (5)
H13 0.5477 0.3831 0.9378 0.038*
C14 0.49865 (11) 0.42256 (12) 1.1117 (2) 0.0298 (5)
C15 0.51346 (14) 0.45809 (15) 1.2361 (3) 0.0486 (7)
H15 0.4741 0.4696 1.2954 0.058*
C16 0.63851 (13) 0.45907 (16) 1.1889 (3) 0.0483 (7)
H16 0.6868 0.4717 1.2150 0.058*
C17 0.40561 (12) 0.35089 (13) 0.9806 (2) 0.0336 (5)
H17 0.4396 0.3271 0.9228 0.040*
C18 0.30452 (13) 0.38498 (15) 1.0785 (3) 0.0449 (6)
H18 0.2541 0.3888 1.0999 0.054*
C19 0.35921 (13) 0.42348 (15) 1.1409 (3) 0.0430 (6)
H19 0.3539 0.4577 1.2123 0.052*
O1W 0.61506 (12) 0.04498 (13) 0.5852 (2) 0.0720 (6)
H1WA 0.6273 0.0899 0.5972 0.108*
H1WB 0.6014 0.0360 0.5018 0.108*
  1. aOccupancy: 0.44(6), bOccupancy: 0.28(3).

Source of material

All chemical reagents were used without further purification. The 3-nitrobenzene-1,2-dicarboxylic acid were purchased from Beijing Bailingwei Technology Co., Ltd. 3,5–Bis(1-imidazolyl)pyridine was bought from Jinan Henghua Technology Co., Ltd. All other chemical reagents were of analytical grade and obtained from the Tianjin Deen Chemical Reagent Co., Ltd. The mixture of 3-nitrobenzene-1,2-dicarboxylic acid (H23–Nbdc 21.4 mg, 0.1 mmol), 3,5-bis(1-imidazolyl)pyridine (bip, 21.1 mg, 0.1 mmol), Cd(OAc)2·2H2O (26.7 mg, 0.1 mmol), NaOH (4 mg, 0.10 mmol) and H2O (6 mL) was placed in a 23 ml Teflon-lined autoclave at 393 K for four days, then cooled to room temperature. Colorless block crystals were obtained in ca. 62% yield. Elemental analysis calcd. (%) for C30H25N11O8Cd: C, 46.20; H, 3.23; N, 19.75 Found: C, 46.24; H, 3.28; N, 19.68.

Experimental details

Using Olex2 [2]. The structure was solved with the SheLXT [3] structure solution program using Intrinsic Phasing and refined with the ShelXL [4] refinement package. Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms. The U iso of the H-atoms were constrained to 1.2 times U eq of their bonding carbon atoms with C–H = 0.93 Å (aromatic) and 1.5 times U eq for the hydrogen atoms at water with O–H = 0.85 Å. The O4 and O5 atoms were disordered and the components of disordered atoms were refined isotropically.

Comment

Metal-organic Complexes have always been in the spotlight for a long time not only for their diversities of structures [5], [6], [7], [8], but also for their strong thermal and chemical stabilities [9], [10], [11], [12]. At the same time, they have attractive application prospects in many fields such as gas storage/separations, fluorescent sensing, nonlinear optics, magnetic, catalysis, and so on [13], [14], [15], [16]. Carboxylate ligands with the electron-withdrawing group (–NO2) are widely used as an oxygen-donor ligand because the N and O atoms in the –NO2 group can not only serve as coordination sites but also as acceptors for hydrogen-bonds to enrich the structural and functional diversities of coordination polymers [16]. In our previous work, we had synthesized a series of metal-organic compounds with diverse structures and excellent properties such as magnetism, fluorescent, photochemical and photocatalytic properties based on 3-nitrophthalic acid [17], [18], [19] and 4-nitrophthalic acid [16, 2022]. Among the N-donor ligands, the imidazolyl ligands are the most common N-donor ligands to combine with O-donor ligands to adjust the structures and properties of metal-organic complexes [23]. The 3,5-bis(1-imidazolyl)pyridine (bip) is one of many imidazolyl N-donor ligands which were used to synthesize metal-organic complexes [24], [25], [26], [27]. In this study, we selected the 3-nitrobenzene-1,2-dicarboxylic acid (H23–Nbdc) as an educt, 3,5-bis(1-imidazolyl)pyridine (bip) as a N-donor ligand, cadmium acetate as Cd-metal supplier to obtain the coordination polymer.

The single-crystal X-ray analysis shows that the title complex crystallizes in orthorhombic crystal system and features a one-dimensional chain. The asymmetric unit contains a half Cd(II) ion, a half 3–Nbdc dianion, one bip molecule, and one guest water molecule, as shown in the figure (A: x, 0.5 − y, z; B: 0.5 + x, y, 1.5 − z; C: 0.5 + x, 0.5 − y, 1.5 − z). The Cd(II) ion is seven coordinated by three oxygen atoms and four nitrogen atoms. Among them, three oxygen atoms are from two symmetry-related 3–Nbdc dianions, and the other four nitrogen atoms are from three symmetry-related bip ligands. The seven-coordinated Cd(II) ion forms a slightly distorted single cap octahedral [CoN4O3] geometry with the four atoms (N1, N1A, N4B, N4C) in the equatorial plane and the other three atoms (O1, O1A, O3B) in the axial position (see the Figure). The Cd–O bond lengths are 2.551(2) and 2.543(2) Å, whilst the Cd–N bond lengths are 2.317(2) and 2.3304(19) Å, respectively. The bond angles around the Cd centers range from 50.02(10) to 164.94(7)°.

The two carboxyl groups of one 3–Nbdc anion adopt chelating-bidentate and monodentate coordination modes, respectively. Every two cadmium atoms are linked together through one 3–Nbdc dianion and two bip molecules by an external single bridging coordination mode to form a chain with the Cd⃛Cd distance of 9.1213(1) Å. Adjacent chains are linked through hydrogen bonds between free water oxygen atom and nitrogen atom from bip molecules (O(1W)–H(1WB)⃛N5: d = 2.22 Å) along the c direction to generate a two-dimensional layer with the nearest Cd⃛Cd separation of 9.5619(2) Å. The adjacent layers stack together in a –ABAB-sequence to achieve a whole three-dimensional supramolecular structure via very weak interlayer π-π interactions between pyridine ring and imidazole ring of bip ligands. The centroid-centroid distance and the dihedral angle between pyridine ring and imidazole ring are 3.9677(0) Å and 15.9°, respectively.


Corresponding author: Gui-Lian Li, College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang, Henan, 471934, P. R. China, E-mail:

Funding source: National Natural Science Foundation of China 10.13039/501100001809

Award Identifier / Grant number: 21571093

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was supported by the National Natural Science Foundation of China (No. 21571093).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2021-04-08
Accepted: 2021-05-10
Published Online: 2021-07-28
Published in Print: 2021-09-27

© 2021 Wei-Dong Yin et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  32. The layered crystal structure of bis(theophyllinium) hexachloridostannate (IV), C14H18N8O8SnCl6
  33. The crystal structre of 3-(1-ethenyl-1H-imidazol-3-ium-3-yl)propane-1-sulfonate, C8H12N2O3S
  34. Synthesis and crystal structure of di-tert-butyl 1″-acetyl-2,2″,9′-trioxo-4a′,9a′-dihydro-1′H,3′H,9′H-dispiro[indoline-3,2′-xanthene-4′,3″-indoline]-1,3′-dicarboxylate, C39H38N2O9
  35. The crystal structure of 4-chloro-2-(quinolin-8-yl)isoindoline-1,3-dione, C17H9ClN2O2
  36. The crystal structure of 1-fluoro-4-(p-tolylethynyl)benzene, C15H11F
  37. The crystal structure of bis[4-bromo-2-(1H-pyrazol-3-yl) phenolato-κ2N,O] copper(II), C18H12Br2CuN4O2
  38. The crystal structure of poly[(μ 3-imidazolato-κ 3 N:N:N′)(tetrahydrofuran- κ 1 O)lithium(I)], C7H11LiN2O
  39. Crystal structure of N′,N′′′-((1E,1′E)-(propane-2,2-diylbis(1H-pyrrole-5,2diyl))bis(methaneylylidene))di(nicotinohydrazide) pentahydrate, C25H24N8O2·5H2O
  40. Crystal structure of 3-(2-ethoxy-2-oxoethyl)-1-ethyl-1H-imidazol-3-ium hexafluoridophos-phate(V), C9H15F6N2O2P
  41. Crystal structure of (1,10-phenanthroline-κ2N,N′)-bis(3-thiophenecarboxylato-κ2O,O′)copper(II), C22H14N2O4S2Cu
  42. The crystal structure of 2-amino-3-carboxypyridin-1-ium iodide hemihydrate, C6H8IN2O2.5
  43. Crystal structure of (E)-7-methoxy-2-((6-methoxypyridin-2-yl)methylene)-tetralone, C18H17NO3
  44. The crystal structure of [μ-hydroxido-bis[(5,5′-dimethyl-2,2′-bipyridine-κ2N,N′)-tricarbonylrhenium(I)] bromide hemihydrate, C30H26N4O9Re2Br
  45. The crystal structure of 2,5-bis(3,5-dimethylphenyl)thiazolo[5,4-d]thiazole, C20H18N2S2
  46. The crystal structure of 5-benzoyl-1-[(E)-(4-fluorobenzylidene)amino]-4-phenylpyrimidin-2(1H)-one, C24H16FN3O2
  47. Crystal structure of monocarbonyl(N-nitroso-N-oxido-phenylamine-κ 2 O,O′)(tricyclohexylphosphine-κP)rhodium(I), C25H39N2O3PRh
  48. Crystal structure of poly[bis[μ3-1,3,5-tris[(1H-imidazol-1-yl)methyl]benzene-κ3N:N′:N″]nickel(II)] hexafluorosilicate, C36H36N12NiSiF6
  49. The crystal structure of 13-(pyrazole-1-yl-4-carbonitrile)-matrine, C19H25N5O
  50. Crystal structure of 3,5-bis((E)-4-methoxy-2-(trifluoromethyl)benzylidene)-1-methylpiperidin-4-one, C24H21F6NO3
  51. The crystal structure of N,N′-(Disulfanediyldi-2,1-phenylene)di(6′-methylpyridine)-2-carboxamide, C26H22N4O2S2
  52. Crystal structure of (E)-7-fluoro-2-(4-methoxy-2-(trifluoromethyl)benzylidene)-3,4-dihydronaphthalen-1(2H)-one, C19H14F4O2
  53. Crystal structure of ethyl 1-(4-fluorophenyl)-4-phenyl-1H-pyrrole-3-carboxylate, C19H16FNO2
  54. The crystal structure of cis-diaqua-bis (N-butyl-N-(pyridin-2-yl)pyridin-2-amine-κ2N,N′)cobalt(II)] dichloride trihydrate, C28H44Cl2N6O5Co
  55. Crystal structure of (E)-7-methoxy-2-((6-methoxypyridin-3-yl)methylene)-3,4-dihydronaphthalen-1(2H)-one, C18H17NO3
  56. Crystal structure of (E)-2-((3-fluoropyridin-4-yl)methylene)-7-methoxy-3,4-dihydronaphthalen-1(2H)-one, C17H14FNO2
  57. The crystal structure of 6-bromohexanoic acid, C6H11BrO2
  58. The crystal structure of 4-chloro-thiophenol, C6H5ClS
  59. The crystal structure of 4-bromobenzyl chloride, C7H6BrCl
  60. The crystal structure of di-tert-butyl dicarbonate, C10H18O5
  61. The crystal structure of (2-(4-chlorophenyl)-5-methyl-1,3-dioxan-5-yl)methanol, C12H15ClO3
  62. The crystal structure of the co-crystal: 2-hydroxybenzoic acid – N′-(butan-2-ylidene)pyridine-4-carbohydrazide, C10H13N3O·C7H6O3
  63. Crystal structure and anti-inflammatory activity of (E)-7-fluoro-2-((5-methoxypyridin-3-yl)methylene)-3,4-dihydronaphthalen-1(2H)-one, C17H14FNO2
  64. Crystal structure of (E)-7-fluoro-2-((6-methoxypyridin-3-yl)methylene)-3,4-dihydronaphthalen-1(2H)-one, C17H14FNO2
  65. Crystal structure of 1,1′-(butane-1,4-diyl)bis(3-propyl-1H-imidazol-3-ium) bis(hexafluoridophosphate), C32H56F24N8P4
  66. The crystal structure of dichlorido-bis(3-methyl-3-imidazolium-1-ylpropionato-κ2)-cadmium(II), C14H20CdCl2N4O4
  67. Crystal structure of 1-(2-cyanobenzyl)-3-cyano-4-phenyl-4-(2-cyanobenzyl)-1,4-dihydropyridine monohydrate, C56H42N8O
  68. The crystal structure of 3-(carboxymethyl)-1-ethenyl-1H-imidazol-3-ium chloride, C7H9N2O2Cl
  69. The crystal structure of adamantylmethoxydiphenylsilane, C23H28OSi
  70. Redetermination of the crystal structure of (2E,4Z,13E,15Z)-3,5,14,16-tetramethyl-2,6,13,17-tetraazatricyclo[16.4.0.07,12]docosa-1(22),2,4,7,9,11,13,15,18,20-decaene, C22H24N4
  71. Crystal structure of (E)-7-hydroxy-2-((6-methoxypyridin-2-yl)methylene)-3,4-dihydronaphthalen-1(2H)-one, C17H15NO3
  72. Crystal structure of catena-poly[diaqua-bis(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2 N:N′)cobalt(II)] dinitrate, C18H28N10O8Co
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