Home The synthesis and crystal structure of N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide, C20H10N4Cl2F6O2S
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The synthesis and crystal structure of N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide, C20H10N4Cl2F6O2S

  • Lianqing Chen ORCID logo EMAIL logo , Chenglong Tang , Zhang Long and Zhongda Wu
Published/Copyright: February 28, 2020

Abstract

C20H10N4Cl2F6O2S, monoclinic, P21/n (no. 14), a = 11.5523(17) Å, b = 16.120(2) Å, c = 13.0228(18) Å, β = 114.297(2)°, V = 2210.3(5) Å3, Z = 4, Rgt(F) = 0.0578, wRref(F2) = 0.1699, T = 173 K.

CCDC no.: 1982986

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.20 × 0.20 × 0.20 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.46 mm−1
Diffractometer, scan mode:Bruker P4, φ and ω
θmax, completeness:27.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:13018, 4977, 0.037
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3585
N(param)refined:344
Programs:CrysAlisPRO [1], SHELX [2], [3], Diamond [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cl10.33212(8)0.84882(5)0.53960(7)0.0261(2)
Cl20.67489(9)0.60655(6)0.72792(8)0.0347(2)
S10.54653(10)0.76081(6)1.03711(7)0.0327(2)
F10.3820(3)0.8346(2)1.0956(2)0.0659(8)
F20.4350(3)0.9073(2)0.9861(3)0.0706(8)
F30.3107(3)0.8035(3)0.9199(3)0.0911(10)
O10.6575(3)0.8061(2)1.1182(2)0.0445(7)
O20.5355(2)0.59016(16)0.9433(2)0.0363(6)
N10.5287(3)0.75773(16)0.7310(2)0.0206(6)
N20.6054(3)0.82512(16)0.7684(2)0.0212(6)
N30.4123(3)0.65703(17)0.7837(2)0.0248(6)
H30.34450.65590.72210.030*
N40.7608(3)0.9520(2)0.9934(3)0.0409(8)
C10.4207(3)0.76711(19)0.5259(3)0.0202(6)
C20.5052(3)0.72647(19)0.6214(3)0.0191(6)
C30.6170(3)0.83447(19)0.8737(3)0.0217(7)
C40.5470(3)0.7739(2)0.9034(3)0.0223(7)
C50.4117(5)0.8307(4)1.0070(4)0.0555(9)
C60.4910(3)0.7259(2)0.8083(3)0.0214(7)
C70.4406(3)0.59026(19)0.8562(3)0.0225(7)
H8A0.38600.46950.85530.029*
H8B0.31570.51290.73800.029*
C80.3451(3)0.5205(2)0.8187(3)0.0238(7)
C90.2320(3)0.53733(19)0.8462(3)0.0216(7)
H100.33060.57131.00920.035*
C100.2491(4)0.5628(2)0.9540(3)0.0290(8)
C110.1447(4)0.5752(2)0.9787(3)0.0353(9)
H110.15630.59291.05030.042*
C120.0236(4)0.5617(2)0.8979(3)0.0332(8)
H12−0.04620.56980.91510.040*
C130.0063(3)0.5359(2)0.7917(3)0.0336(8)
H13−0.07530.52590.73750.040*
C140.1098(3)0.5249(2)0.7654(3)0.0284(7)
H140.09720.50900.69290.034*
C150.6963(3)0.8998(2)0.9416(3)0.0268(7)
C160.5723(3)0.6579(2)0.6093(3)0.0234(7)
C170.5568(3)0.6308(2)0.5040(3)0.0264(7)
H170.60060.58460.49620.032*
C180.4750(3)0.6737(2)0.4102(3)0.0259(7)
C190.4619(4)0.6472(3)0.2952(3)0.0397(9)
C200.4056(3)0.7413(2)0.4200(3)0.0227(7)
H200.34980.76880.35600.027*
F4a0.5559(3)0.6769(3)0.2713(3)0.0638(14)
F4Ab0.550(2)0.6088(17)0.2976(14)0.074(6)
F5a0.3566(4)0.6746(4)0.2125(4)0.0696(18)
F5Ab0.403(2)0.6989(14)0.217(2)0.058(5)
F6a0.4668(7)0.5666(2)0.2842(4)0.084(2)
F6Ab0.361(2)0.5871(12)0.2615(13)0.066(5)
  1. aOccupancy: 0.811(8), bOccupancy: 0.189(8).

Source of material

All chemical solvents and reagents were of analytical grade quality, which were obtained from commercial suppliers and used directly without further purification (Wu Han Chemical Reagent Co., Ltd.).

Firstly, to a 10.0 mL toluene solution of fipronil (4.37 g, 10 mmol), we added a certain amount of phenylacetyl (12 mmol) in toluene (35.0 mL) and 4 Å molecular sieves (2.0 g). After that p-TSA (0.2 g) was added as a catalyst with ultrasonic stirring for 0.5 h. This reaction mixture was reacted at about 120 °C for 8 h. The resulting solution was then cooled to room temperature and purified by filtration. The filtrate was washed with saturated sodium carbonate solution (30.0 mL), water and brine, respectively, and then dried over MgSO4. The filtrate was concentrated by rotary evaporation, and adsorbed on activated silica gel. The crude product was obtained by column chromatography on silica gel with Vethyl acetate/Vpetroleum ether (1:8) as the eluent.

Secondly, NaBH4 in CH2Cl2 (25.0 mL) was added to the reaction mixture and stirred for 4 h. Finally, the filtrate was concentrated by rotary evaporation, and adsorbed on activated silica gel (2.0 g), the crude product was obtained by column chromatography on silica gel with ethyl acetate, which was dried under vacuum to give the compound N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide. Yield: 1.22 g (74.1%), 1H NMR (CDCl3, 400 MHz, ppm) 8.11 (s, 1H, N—H), 7.72 (s, 1H, Ar—H), 7.59 (s, 1H, Ar—H), 7.32 (s, 1H, Ar—H), 7.26 (s, 1H, Ar—H), 7.11 (s, 1H, Ar—H), 2.59 (t, 2H, CH—H). IR(KBr, υ/cm-1) : 3417 (N—H), 1718 (—C=O), 1528 (pyrazole ring skeleton vibration), 1508 (benzene ring skeleton vibration), 1314 (C—F), 609 (aromatic ring C—H). MS (FAB): m/e, 556 (M+).

Experimental details

All H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with C—H distances in the range 0.93–0.98 Å, and with Uiso(H) = 1.2 Ueq. The CF3 group was refined with a disorder model. Atom F4, F5 and F6 of the CF3 moiety were found to be disordered over two positions (F4/F4A, F5/F5A and F6/F6A).

Comment

Amides [5] have attracted much attention because of their strong physiological activity [6] in the fields of insecticide, weed control, and antiviral, especially in the field of pesticides [7], [8]. For the characterization of similar compounds, we found that these compounds have good fluorescence and hydrophobic properties [9], which greatly helped to detect the molecular orientation and insecticidal activity of pesticides [10]. Fipronil is also used in pesticides [11]. Its mechanism of action is to inhibit the GABA-gated chloride channels [12], so it has high insecticidal activity, thus has a high level of emulation to Plutella xylostella and other insects and has a long duration. However, fipronil is extremely unfriendly to the environment and can have harmful effects on various types of mammals around it [13], so it must be optimized.

In this experiment, we also collected the NMR and IR spectra of the synthesized product [14] to verify the structure of the product, and the results proved that the obtained product was the expected target product. The crystal structure of the title compound consists of a fipronil structure and phenylacetyl moiety, and is bridged with C—N bond 1.379(4) Å formed by N(3)—C(7) [15]. The bridge angle C(7)—N(3)—C(6) is 121.2(3)°. In the crystal structure the 1,3-dichloro-5-(trifluoromethyl)benzene ring is not coplanar with the plane of the pyrazole ring. Two of the heterocyclic rings make a dihedral angle of C(6)—N(1)—C(2) 128.5(3)°. The N(1)—C(2) bond distance is 1.430(4) Å. The mean plane of C(4)-S(1)-C(5) is slightly twisted out of the pyrazole ring with a dihedral angle of 93.65(18)°. The C(4)-S(1), S(1)-O(1) and C(7)-O(2) bond distance are 1.756(3) Å, 1.476(3) Å and 1.211(4) Å. The N4—C15 bond distance is 1.142(5) Å. The spatial angle between the benzene ring and the pyrazole ring in fipronil is 90°.

The packing of the title compound is partially facilitated by Y—X⋯π interactions between aromatic rings in neighboring molecules. The two most prominent such interactions are given in the Y-X⋯Cg(π-Ring) interactions table (Cg1 represents the centroid of ring N1/N2/C4/C2/C3, Cg2 that of C7/C12/C11/C10/C9/C8). There is no classical intermolecular H-bonds in the title structure. And the first of these interactions, C9—Cl(2)⋯C(g)1π which acts in centrosymmetric pairs, connects the molecules to infinite chains along the c-axis of the unit cell. The second slightly weaker type of C19—F6A⋯C(g)2π interaction connects these chains with each other.

The bioactivities of N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide phenylpyrazole insecticide (fipronil) against the 3rd instar larvae of Plutella xylostella were determined by the leaf disc-dipping assay. Leaves of Chinese cabbage grown in the greenhouse were collected, and discs (5 cm diameter) were punched from each leaf. The compounds were dissolved in acetone and suspended in distilled water containing Triton X-100. Leaf discs were dipped in each test solution for 30 s and allowed to dry for 2 h. The treated leaf discs were placed into Petri dishes (10 cm diameter). Then, ten Plutella xylostella larvae were introduced into each dish. Doubly distilled water containing acetone-Triton X-100 solution was used as the control. Petri dishes were kept in incubator at 25 °C and 85% relative humidity under a photoperiod of 16:8 h light: dark. All treatments were replicated three times. Mortalities were determined 24 h after treatment. The death rate of each treatment group was confirmed. LC50 value was calculated by the SPSS. Bioactivity result showed that the activities of compounds N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide against Plutella xylostella after 24 h is 14.67 mg⋅L−1 better than that of fipronil 27.24 mg⋅L−1. This approach proposes a novel insight to provide a great number of novel phenylpyrazole fluorescent insecticide by a general green method.

The absorption and photoluminescence spectra of the title compound in CH2Cl2 solution were investigated. In the absorption spectrum, intense absorptions are observed in the ultraviolet region of the spectrum. Strong absorption peak near 210 nm and 275 nm, belonging to the conjugated absorption peak of benzene ring and pyrazole ring, in the title compound. The benzene ring forms a larger conjugated structure with the pyrazole ring, resulting in a red shift in the UV absorption and a medium-intensity absorption peak at 320–387 nm. Its UV absorption is mainly attributed to the p-π* transition of the compound conjugated system. The fluorescene spectrum of the title compound shows a major strong peak at 445 nm. Phenylpyrazole heterocycle compounds are good candidates to design and develop new fluorescent pesticides, which lays a foundation for the natural degradation and fluorescence detection of pesticide residues.

Acknowledgements

The authors thank the Natural Science Foundation of Hubei province for Distinguished Yong Scholars (No.2013CFA034); National Natural Science Foundation of China (grant No. 20702064, 21177161 and 31402137); the Program for Excellent Talents in Hubei Province (RCJH15001); and the Fundamental Research Funds for the Central University, South-Central University for Nationalities (CZP17077).

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Received: 2019-12-18
Accepted: 2020-02-10
Published Online: 2020-02-28
Published in Print: 2020-04-28

©2020 Lianqing Chen et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  52. Crystal structure of 18-crown-6 – 1,4-diiodotetrafluorobenzene – acetonitrile (1/1/2), C22H30F4I2N2O6
  53. Crystal structure of diisobutyl 2,5-dihydroxycyclohexa-1,4-diene-1,4-dicarboxylate, C16H24O6
  54. Crystal structure of poly[[tris(μ2-cis-1,2-cyclohexanedicarboxylato)-κ2O, O′]-bis[μ3-1,3,5-tris[(1H-imidazol-1-yl)methyl]benzene-κ3N, N′,N′′]-trizinc(II)] – water (1/20), C60H106N12O32Zn3
  55. The synthesis and crystal structure of 5-amino-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-((trifluoromethyl)sulfinyl)-1H-pyrazole-3-carboxamide–tetrahydrofuran (1/1), C16H14N4Cl2F6O3S
  56. Crystal structure of dimethylbis(diisopropyldithiocarbamato-κ2S,S′)tin(IV), C16H34N2S4Sn
  57. Crystal structure of diisopropyl 2,5-dihydroxycyclohexa-1,4-diene-1,4-dicarboxylate, C14H20O6
  58. The synthesis and crystal structure of ethyl (E)-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-5-((2-methoxybenzylidene)amino)-4-((trifluoromethyl)sulfinyl)-1H-pyrazole-3-carboxylate, C22H15N3Cl2F6O4S
  59. The crystal structure of a matrine derivative, 13-(methylamine-1-yl) carbodithioate matrine, C17H27N3OS2
  60. Crystal structure of bis(2-hydroxy-6-((phenylimino)methyl)phenolato-κ2N,O)copper(II), C26H20CuN2O4
  61. The crystal structure of 2-p-fluorophenyl-5-dihydroxymethyl-1,3,4-oxadiazole, C9H7FN2O3
  62. Crystal structure of dichloridobis(4-chlorophenyl-κC1)(1,10-phenanthroline-κ2N,N′)tin(IV), C24H16Cl4N2Sn
  63. Crystal structure of bis{bromido-triphenyltin(IV)}(μ2-[4,4′-bipyridine]1,1′-dioxide-κ2O:O′), C46H38Br2N2O2Sn2
  64. Crystal structure of 2-(5-chloro-quinolin-8-yloxy)-N-quinolin-8-yl-acetamide, C20H14N3O2Cl
  65. Crystal structure of bis(N-(1-(3-ethylpyrazin-2-yl)ethylidene)-3-hydroxy-2-naphthohydrazonato-κ3N,N′,O)cobalt(II) — dimethylformamide (1/1), C41H41N9O5Co
  66. Crystal structure of bis[2-(1-(3-ethylpyrazin-2-yl)ethylidene)-1-tosylhydrazin-1-ido-κ3-N,N′,O]copper(II), C30H34N8O4S2Cu
  67. Crystal structure of (2-p-tolylpyrimidine-κ2C,N)(triphenylphosphane-κP) palladium(II), C29H24ClN2PPd
  68. Halogen bonding in crystal structure of bis(1,4,7,10-tetraoxacyclododecane-κ4O,O′,O′′,O′′′)cesium triiodide, C16H32CsI3O8
  69. The synthesis and crystal structure of N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide, C20H10N4Cl2F6O2S
  70. The crystal structure of 4-(trifluoromethyl)nicotinic acid, C7H4F3NO2
  71. Crystal structure of 3-(2-methylbenzyl)thiazolidin-2-one, C11H13ONS
  72. The crystal structure of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethane-1,1-diol, C11H8F3NO2
  73. The crystal structure of 3-bromoisonicotinic acid, C6H4BrNO2
  74. The crystal structure of 5-nitropicolinic acid monohydrate, C6H6N2O5
  75. The crystal structure of 3-(4-hydroxybenzyl)-1,5-dioxaspiro[5.5]undecane-2,4-dione, C16H18O5
  76. Crystal structure of [[Mo3Se7(S2CNEt2)3]2(μ-Se)] ⋅ 2(C6H4Cl2), C42H68Cl4Mo6N6S12Se15
  77. Crystal structure of (E)-4-hydroxy-3-((5-phenyl-1,3,4-oxadiazol-2-yl)thio)pent-3-en-2-one, C13H12N2O3S
  78. The crystal structure of (2,3-dioxo-5,6:13,14-dibenzo-9,10-benzo-1,4,8,11-7, 11-diene-κ4N,N′,N′′,N′′′)-nickel(II), Ni(C22H14N4O2)
  79. Crystal structure of 3-(1-benzyl-2-ethyl-4-nitro-1H-imidazol-5-ylthio)-propanoic acid, C15H17N3O4S
  80. The crystal structure of dichlorobis(2-(dicyclohexylphosphino)-2′,4′,6′-tri-i-propyl-1,1′-biphenyl) palladium(II)-dichloroform, C68H100Cl8P2Pd
  81. Crystal structure and antimicrobial properties of (1,4,7,10-tetraoxacyclododecane-κ4O,O′,O′′,O′′′)cesium(I) pentaiodide, C16H32CsI5O8
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