Home Crystal structure of 3,7-dimethyl-1-(5-oxohexyl)-3,7-dihydro-1H-purine-2,6-dione 4-hydroxybenzoic acid, C20H24N4O6
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Crystal structure of 3,7-dimethyl-1-(5-oxohexyl)-3,7-dihydro-1H-purine-2,6-dione 4-hydroxybenzoic acid, C20H24N4O6

  • Peizhe Li , Lei Liu , Benyong Lou ORCID logo EMAIL logo and Hongbing Zhan
Published/Copyright: January 14, 2020

Abstract

C20H24N4O6, triclinic, P1̄ (no. 2), a = 8.2441(5) Å, b = 11.6409(6) Å, c = 12.0107(9) Å, α = 64.328(6)°, β = 70.778(6)°, γ = 86.678(4)°, V = 976.09(12) Å3, Z = 2, Rgt(F) = 0.0671, wRref(F2) = 0.1702, T = 100 K.

CCDC no.: 1971534

The crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.12 × 0.13 × 0.12 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.11 mm−1
Diffractometer, scan mode:SuperNova, ω-scans
θmax, completeness:29.5°, >84% (up to 25.3°, >99%)
N(hkl)measured, N(hkl)unique, Rint:8047, 4538, 0.026
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3586
N(param)refined:282
Programs:SHELX [1], [2], CrysAlisPRO [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

xyzUiso*/Ueq
O11.1373(3)1.4219(2)−0.58966(19)0.0361(5)
O20.6617(2)0.86534(18)−0.45472(17)0.0262(4)
O30.6666(2)0.89051(17)−0.08677(17)0.0210(4)
O40.6466(2)0.88597(17)0.14372(18)0.0225(4)
O51.0450(2)1.31397(18)0.17545(19)0.0277(4)
O61.1294(2)1.38124(18)−0.04199(18)0.0247(4)
N10.6662(2)0.87322(19)−0.26895(19)0.0170(4)
N20.4885(3)0.7130(2)−0.2588(2)0.0195(5)
N30.3165(2)0.56413(19)−0.0393(2)0.0179(4)
N40.4017(2)0.64925(19)0.06879(19)0.0174(4)
C11.2065(4)1.3783(3)−0.3995(3)0.0323(7)
H1A1.3081411.439458−0.4610650.048*
H1B1.2431941.298254−0.3446700.048*
H1C1.1301021.414469−0.3435340.048*
C21.1115(3)1.3520(2)−0.4749(3)0.0234(6)
C30.9812(3)1.2359(2)−0.3988(2)0.0225(5)
H3A0.9045411.239100−0.3173520.027*
H3B1.0432251.158389−0.3729150.027*
C40.8704(3)1.2229(2)−0.4726(3)0.0241(6)
H4A0.9459191.212248−0.5501380.029*
H4B0.8155411.303161−0.5047450.029*
C50.7295(3)1.1106(2)−0.3903(2)0.0218(5)
H5A0.6570921.118669−0.3104190.026*
H5B0.6546181.114734−0.4413600.026*
C60.8018(3)0.9815(2)−0.3501(2)0.0200(5)
H6A0.8726040.972813−0.4299720.024*
H6B0.8782390.977906−0.3002990.024*
C70.6101(3)0.8323(2)−0.1333(2)0.0164(5)
C80.6080(3)0.8201(2)−0.3352(2)0.0189(5)
C90.4130(4)0.6566(3)−0.3208(3)0.0257(6)
H9A0.4384760.567172−0.2946250.038*
H9B0.4624090.704772−0.4164280.038*
H9C0.2876790.660014−0.2927200.038*
C100.4318(3)0.6666(2)−0.1250(2)0.0171(5)
C110.4890(3)0.7223(2)−0.0638(2)0.0163(5)
C120.4164(3)0.6694(2)0.1767(2)0.0216(5)
H12A0.3390010.6045830.2600970.032*
H12B0.3844790.7549230.1664950.032*
H12C0.5357150.6623200.1760970.032*
C130.3019(3)0.5569(2)0.0776(2)0.0191(5)
H130.2284290.4929990.1584590.023*
C140.7384(3)0.9901(2)0.1235(2)0.0170(5)
C150.7373(3)1.0035(2)0.2335(2)0.0182(5)
H150.6701300.9426740.3189180.022*
C160.8342(3)1.1055(2)0.2178(2)0.0182(5)
H160.8338321.1142610.2929380.022*
C170.8342(3)1.0812(2)−0.0021(2)0.0185(5)
H170.8330661.073480−0.0773920.022*
C180.9304(3)1.1825(2)−0.0159(2)0.0188(5)
H180.9963261.244164−0.1012660.023*
C190.9326(3)1.1959(2)0.0931(2)0.0176(5)
C201.0394(3)1.3018(2)0.0802(2)0.0200(5)
H40.651(5)0.885(4)0.065(4)0.064(12)*
H61.191(4)1.445(3)−0.042(3)0.044(10)*

Source of material

Pentoxifylline (278 mg, 1 mmol) and 4-hydroxybenzoic acid (138 mg, 1 mmol) were dissolved in ethanol (30 mL). The colorless block crystals were obtained after several days.

Experimental details

The structure was solved by direct methods and refined on F2 by full-matrix least-squares methods using the SHELX program package [1,2]. H atoms on C atoms were located geometrically with Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(C). H atoms bonded to O were located by difference maps and refined freely.

Discussion

Pentoxifylline, 3,7-dimethyl-1-(5-oxohexyl)-3,7-dihydro-1H-purine-2,6-dione, is a cardiovascular drug which is formulated as sustained-release tablets [4]. Several cocrystals of pentoxifylline based on synthons between imidazole and carboxylic acids have been reported [5], [6]. There are four hydrogen-bond acceptors in molecular structure of pentoxifylline [7], which could result in various intermolecular interactions with different cocrystal formers. In this work, a cocrystal of pentoxifylline with 4-hydroxybenzoic acid, [C13H18N4 O3]. [C7 H6 O3], was studied.

The cocrystal crystallized in the triclinic P1̄ space group and contained one molecule of pentoxifylline and one molecule of 4-hydroxybenzoic acid in the asymmetric unit. There exist R22(7) synthon between the imidazole ring of pentoxifylline and the carboxyl group of 4-hydroxybenzoic acid (O6-H6⋯N3 = 2.718(3) Å; C13—H13⋯O5 = 3.168(3) Å, x − 1, y − 1, z). There also exist hydrogen-bonded interactions between the purine moiety of pentoxifylline and the hydroxyl group of 4-hydroxybenzoic acid (O4—H4⋯O3 = 2.696(3) Å; C17—H17⋯O3 = 3.333(3) Å). As a result, 4-hydroxybenzoic acid and pentoxifylline are linked parallel to each other into a 1D hydrogen-bonded chain along the [1 1 0] direction. The purine rings of pentoxifylline are almost coplanar with 4-hydroxybenzoic acid within the chain.

The other two hydrogen-bond acceptors (O1 and O2) of pentoxifylline are involved in different weak C—H⋯O interactions. The —C=O in side chain of pentoxifylline is involved in C—H⋯O interactions with the imidazole ring of pentoxifylline (C12—H12A⋯O1 = 3.314(3) Å; C13—H13⋯O1 = 3.394(3) Å, x − 1, y − 1, z + 1). There also exist C—H⋯O interactions between the phenyl ring of 4-hydroxybenzoic acid and the C=O of purine (C15—H15⋯O2 = 3.218(3) Å, x, y, z + 1). There exist pi-pi interactions between imidazole groups with a centroid–centroid distance of 3.428 Å. The purine ring is also involved in pi-pi interactions with the phenyl ring of 4-hydroxybenzoic acid with a centroid–centroid distance of 3.506 Å. As a result, the various weak intermolecular interactions engineer the hydrogen-bonded chains into a structure with a density of 1.417 g/cm3.

Acknowledgements

The authors are grateful to the support from the Natural Science Foundation of Fujian Province (2019J01758) and Research Projects of Minjiang University (MJY18003).

References

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Received: 2019-11-16
Accepted: 2019-12-12
Published Online: 2020-01-14
Published in Print: 2020-04-28

©2020 Peizhe Li et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  79. Crystal structure of 3-(1-benzyl-2-ethyl-4-nitro-1H-imidazol-5-ylthio)-propanoic acid, C15H17N3O4S
  80. The crystal structure of dichlorobis(2-(dicyclohexylphosphino)-2′,4′,6′-tri-i-propyl-1,1′-biphenyl) palladium(II)-dichloroform, C68H100Cl8P2Pd
  81. Crystal structure and antimicrobial properties of (1,4,7,10-tetraoxacyclododecane-κ4O,O′,O′′,O′′′)cesium(I) pentaiodide, C16H32CsI5O8
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