Home Physical Sciences Crystal structure of (2-p-tolylpyrimidine-κ2C,N)(triphenylphosphane-κP) palladium(II), C29H24ClN2PPd
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Crystal structure of (2-p-tolylpyrimidine-κ2C,N)(triphenylphosphane-κP) palladium(II), C29H24ClN2PPd

  • Hui Liu ORCID logo EMAIL logo and Xin-Hua Lou
Published/Copyright: February 22, 2020

Abstract

C29H24ClN2PPd, triclinic, P1̄ (no. 2), a = 9.9885(8) Å, b = 11.5836(8) Å, c = 11.6133(9) Å, α = 76.342(6)°, β = 89.821(6)°, γ = 71.435(7)°, V = 1233.96(16) Å3, Z = 2, Rgt(F) = 0.0337, wRref(F2) = 0.0841, T = 291 K.

CCDC no.: 1970142

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.20 × 0.18 × 0.18 mm
Wavelength:Cu Kα radiation (1.54184 Å)
μ:7.83 mm−1
Diffractometer, scan mode:Xcalibur, ω
θmax, completeness:67.1°, >99%
N(hkl)measured, N(hkl)unique, Rint:8906, 4400, 0.031
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3959
N(param)refined:309
Programs:CrysAlisPRO [1], Olex2 [2], SHELX [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Pd10.75900(3)0.82567(2)0.80146(2)0.03241(10)
Cl10.57819(12)0.82255(11)0.93271(11)0.0602(3)
P10.72495(9)0.67552(8)0.72113(8)0.0320(2)
N10.7994(3)0.9666(3)0.8685(3)0.0367(7)
N20.9434(4)1.0973(3)0.8417(4)0.0536(9)
C10.5891(4)0.6072(3)0.7807(3)0.0352(8)
C20.4498(4)0.6851(4)0.7715(4)0.0480(10)
H20.42770.77090.73830.058*
C30.3428(4)0.6369(4)0.8112(4)0.0537(11)
H30.24960.69020.80440.064*
C40.3740(5)0.5111(5)0.8602(4)0.0591(12)
H40.30240.47850.88700.071*
C50.5118(5)0.4329(4)0.8697(4)0.0619(12)
H50.53310.34730.90380.074*
C60.6188(4)0.4794(4)0.8295(4)0.0472(10)
H60.71120.42490.83500.057*
C70.8840(4)0.5371(3)0.7422(3)0.0347(8)
C80.9489(4)0.4875(4)0.8553(4)0.0530(11)
H80.91370.52690.91540.064*
C91.0662(5)0.3794(4)0.8810(4)0.0574(12)
H91.10850.34610.95810.069*
C101.1194(4)0.3221(4)0.7936(4)0.0537(11)
H101.19840.24980.81090.064*
C111.0574(5)0.3700(4)0.6808(4)0.0607(12)
H111.09460.33070.62120.073*
C120.9390(5)0.4775(4)0.6543(4)0.0505(10)
H120.89650.50940.57710.061*
C130.6650(4)0.7275(4)0.5632(3)0.0374(8)
C140.6190(4)0.6514(4)0.5078(4)0.0523(10)
H140.62430.57090.55010.063*
C150.5656(5)0.6943(6)0.3906(4)0.0671(14)
H150.53790.64170.35350.081*
C160.5529(5)0.8150(5)0.3279(4)0.0689(15)
H160.51490.84450.24940.083*
C170.5966(5)0.8904(5)0.3819(4)0.0666(14)
H170.58920.97130.33950.080*
C180.6520(4)0.8485(4)0.4995(4)0.0496(10)
H180.68040.90150.53550.060*
C190.7340(4)1.0196(4)0.9519(4)0.0477(10)
H190.66180.99390.98860.057*
C200.7720(5)1.1120(4)0.9847(4)0.0558(11)
H200.72851.14851.04420.067*
C210.8762(5)1.1480(4)0.9261(4)0.0583(12)
H210.90181.21160.94620.070*
C220.9032(4)1.0064(3)0.8160(4)0.0419(9)
C230.9722(4)0.9398(3)0.7286(4)0.0415(9)
C240.9234(4)0.8449(3)0.7051(3)0.0353(8)
C250.9952(4)0.7810(4)0.6246(4)0.0429(9)
H250.96560.71830.60700.051*
C261.1100(4)0.8066(4)0.5690(4)0.0477(10)
C271.1522(4)0.9017(4)0.5915(4)0.0508(10)
H271.22660.92130.55260.061*
C281.0855(4)0.9681(4)0.6713(4)0.0487(10)
H281.11561.03140.68700.058*
C291.1881(5)0.7302(5)0.4862(5)0.0680(14)
H29A1.22630.64340.52850.102*
H29B1.26380.76010.45610.102*
H29C1.12390.73840.42110.102*

Source of material

The title compound was obtained from the bridge-splitting reaction of the palladacyclic dimer of 2-p-tolylpyrimidine and PPh3 according to the literature [4] and recrystallized from a dichloromethane/petroleum ether solution at room temperature to give the desired crystals suitable for single-crystal X-ray diffraction.

Experimental details

Data collection and reduction were performed using the CrysAlisPRO software [1]. The structures were solved by direct methods and refined by the least-squares method with Olex2 [2] and SHELXL [3]. All non-hydrogen atoms were refined anisotropically, while hydrogen atoms were placed in geometrically calculated positions and refined using the riding model and appropriate SHELXL AFIX commands.

Comment

Pyrimidine derivatives are an important class of molecules due to their broad area of application in pharmaceuticals and functional materials [5], [6], [7]. In addition, pyrimidines as ligands are also used in organometallic chemistry and catalysis [8], [9], [10]. For example, cyclometalated pyrimidine complexes have been successfully applied to coupling reactions [11], [12], [13]. Here we report the crystal structure of the title cyclopalladated 2-p-tolylpyrimidine complex.

The title complex adopts a trans configuration of the coordinated PPh3 ligand to the nitrogen atom of the pyrimidine ligand [14]. The palladium center feature a square planar coordination geometry. The Pd—P [2.2707(9) Å] and Pd—N [2.110(3) Å] bond lengths of the title complex are similar to those of related palladacycles [8], [15], [16], [17]. The chelate ring of the palladacycle Pd1-N1-C22-C23-C24 is virtually planar, with the greatest deviation from the fitted least-squares mean plane being 0.023(3) Å for N1. The title complex exists as a dimer in the crystal due to intermolecular hydrogen bonds between chlorine atom and the adjacent C—H group of PPh3 (Cl⋯H = 2.886 Å) [17], [18], [19].

Acknowledgements

This work was supported by the Key Scientific Research Project Plan of Higher Education Institutions in Henan Province (No. 20A150008), Analytical Chemistry Course Teaching Team of Zhengzhou Normal University (no. 901029) and Environmental Catalytic Scientific Research Innovation Team of Zhengzhou Normal University (702010).

References

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Received: 2019-12-13
Accepted: 2020-02-05
Published Online: 2020-02-22
Published in Print: 2020-04-28

©2020 Hui Liu et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  64. Crystal structure of 2-(5-chloro-quinolin-8-yloxy)-N-quinolin-8-yl-acetamide, C20H14N3O2Cl
  65. Crystal structure of bis(N-(1-(3-ethylpyrazin-2-yl)ethylidene)-3-hydroxy-2-naphthohydrazonato-κ3N,N′,O)cobalt(II) — dimethylformamide (1/1), C41H41N9O5Co
  66. Crystal structure of bis[2-(1-(3-ethylpyrazin-2-yl)ethylidene)-1-tosylhydrazin-1-ido-κ3-N,N′,O]copper(II), C30H34N8O4S2Cu
  67. Crystal structure of (2-p-tolylpyrimidine-κ2C,N)(triphenylphosphane-κP) palladium(II), C29H24ClN2PPd
  68. Halogen bonding in crystal structure of bis(1,4,7,10-tetraoxacyclododecane-κ4O,O′,O′′,O′′′)cesium triiodide, C16H32CsI3O8
  69. The synthesis and crystal structure of N-(3-cyano-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-(trifluoromethylsulfinyl)-1H-pyrazol-5-yl)-2-phenylacetamide, C20H10N4Cl2F6O2S
  70. The crystal structure of 4-(trifluoromethyl)nicotinic acid, C7H4F3NO2
  71. Crystal structure of 3-(2-methylbenzyl)thiazolidin-2-one, C11H13ONS
  72. The crystal structure of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethane-1,1-diol, C11H8F3NO2
  73. The crystal structure of 3-bromoisonicotinic acid, C6H4BrNO2
  74. The crystal structure of 5-nitropicolinic acid monohydrate, C6H6N2O5
  75. The crystal structure of 3-(4-hydroxybenzyl)-1,5-dioxaspiro[5.5]undecane-2,4-dione, C16H18O5
  76. Crystal structure of [[Mo3Se7(S2CNEt2)3]2(μ-Se)] ⋅ 2(C6H4Cl2), C42H68Cl4Mo6N6S12Se15
  77. Crystal structure of (E)-4-hydroxy-3-((5-phenyl-1,3,4-oxadiazol-2-yl)thio)pent-3-en-2-one, C13H12N2O3S
  78. The crystal structure of (2,3-dioxo-5,6:13,14-dibenzo-9,10-benzo-1,4,8,11-7, 11-diene-κ4N,N′,N′′,N′′′)-nickel(II), Ni(C22H14N4O2)
  79. Crystal structure of 3-(1-benzyl-2-ethyl-4-nitro-1H-imidazol-5-ylthio)-propanoic acid, C15H17N3O4S
  80. The crystal structure of dichlorobis(2-(dicyclohexylphosphino)-2′,4′,6′-tri-i-propyl-1,1′-biphenyl) palladium(II)-dichloroform, C68H100Cl8P2Pd
  81. Crystal structure and antimicrobial properties of (1,4,7,10-tetraoxacyclododecane-κ4O,O′,O′′,O′′′)cesium(I) pentaiodide, C16H32CsI5O8
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