Home Physical Sciences The crystal structure of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethane-1,1-diol, C11H8F3NO2
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The crystal structure of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethane-1,1-diol, C11H8F3NO2

  • Qin Yi , Xiong Zhu , Ji-Run Zhang , Zhi-Xu Zhou and Chun-Shen Zhao ORCID logo EMAIL logo
Published/Copyright: March 25, 2020

Abstract

C11H8F3NO2, monoclinic, P21/c (no. 14), a = 8.6599(8) Å, b = 11.6216(12) Å, c = 10.0903(9) Å, β = 93.393(2)°, V = 1013.73(17) Å3, Z = 4, Rgt(F) = 0.0352, wRref(F2) = 0.0984, T = 273(2) K.

CCDC no.: 1894760

The asymmetric unit of the molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.22 × 0.20 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.15 mm−1
Diffractometer, scan mode:Smart, φ and ω
θmax, completeness:25.1°, >99%
N(hkl)measured, N(hkl)unique, Rint:6371, 1799, 0.031
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1410
N(param)refined:160
Programs:Bruker [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.7543(2)0.63936(15)0.40948(16)0.0419(4)
H10.64870.63180.38880.050*
C20.8053(2)0.70634(17)0.51301(18)0.0517(5)
H20.73400.74330.56370.062*
C30.9637(2)0.72079(17)0.54477(19)0.0542(5)
H30.99630.76700.61630.065*
C41.0696(2)0.66816(17)0.47251(17)0.0472(5)
H41.17450.67950.49370.057*
C51.02207(19)0.59614(15)0.36501(16)0.0372(4)
C60.86168(18)0.58065(14)0.33255(15)0.0331(4)
C70.82250(17)0.50761(15)0.22285(15)0.0333(4)
C81.07828(19)0.47062(18)0.18714(18)0.0458(5)
H81.15030.43260.13820.055*
C91.12923(19)0.53837(16)0.28880(17)0.0440(5)
H91.23480.54700.30870.053*
C100.65706(18)0.48042(15)0.16748(15)0.0371(4)
C110.5787(2)0.38918(17)0.25074(19)0.0479(5)
F10.56076(14)0.42381(12)0.37518(12)0.0675(4)
F20.43873(12)0.36392(11)0.19804(13)0.0711(4)
F30.66016(14)0.29235(11)0.26025(13)0.0690(4)
N10.92546(15)0.45588(13)0.15363(14)0.0408(4)
O10.56888(14)0.57972(11)0.16272(12)0.0467(4)
H1O0.4932(19)0.5713(18)0.1078(18)0.056*
O20.66443(14)0.43114(12)0.04176(12)0.0493(4)
H2O0.7599(18)0.4182(19)0.035(2)0.059*

Source of material

All chemicals, reagents and solvents are of analytical grade and are commercially available. Preparation of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethan-1-ol: To a solution of (trifluoromethyl)trimethylsilane (0.36 g, 0.32 mmol) and isoquinoline-1-carbaldehyde (3.6 g, 6.36 mmol) in 10 mL anhydrous tetrahydrofuran was added tetrabutylammonium fluoride (4 g, 7.63 mmol) at 0 °C. The reaction mixture was stirred at 0 °C for 1 h and warmed to room temperature to stir overnight. The reaction was quenched with dilute hydrochloric acid and was stirred for another 2.5 hours. The pH of the reaction mixture was adjusted to 8.0 and the separated aqueous layer was extracted with ethyl acetate. The organic phase was then dehydrated with anhydrous sodium sulfate and concentrated at reduced pressure to afford the product (1.24 g, 86%). Preparation of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethane-1,1-diol: to a solution of 2,2,2-trifluoro-1-(isoquinolin-1-yl)ethan-1-ol (1.24 g, 5.47 mmol) in anhydrous dichloromethane (10 mL) was added Dess-Martin periodinane (2.78 g, 6.56 mol). The reaction mixture was stirred at room temperature overnight and was quenched with water, followed by extracting with dichloromethane and concentrating at reduced pressure. The crude product was recrystallized from n-hexane (100 mL) twice to afford a crystalline solid (1.06 g, 81.4%). 1H NMR (400 MHz, DMSO-d6) δ [ppm] 8.82 (d, J = 8.8 Hz, 1H), 8.57 (d, J = 5.6 Hz, 1H), 8.04 (d, J = 8.3 Hz, 1H), 7.98(d, J = 5.6 Hz, 1H), 7.83 (t, J = 7.6 Hz, 1H), 7.74 (t, J = 8.4 Hz,1H), 3.34–3.28 (m, 1H). 13C NMR (101 MHz, DMSO-d6) δ [ppm] 151.69, 140.62, 139.11, 132.16, 129.51, 128.61, 127.81, 127.61, 125.70, 125.40, 122.85. MS (ESI): m/z = 242 [M-H]. Crystals were grown in hexane/chloroform at room temperature.

Experimental details

All hydrogen atoms were placed in geometrically calculated positions. The Uiso values of the hydrogen atoms were set to 1.2 Ueq.

Comment

2,2,2-Trifluoro-1-(isoquinolin-1-yl)ethane-1,1-diol has a very broad application prospect as an important intermediate in pharmaceutical synthesis. The structure of isoquinoline-diol is an effective ingredient which is used preventing skin aging and wrinkles, for preventing hair loss, wherein 1,5-isoquinolinediol was developed as an agent to prolong life. In this application the collagenase can be inhibited to improve the wrinkles of the skin. It is also the main component of the synthesis of poly (ADP-ribose) polymerase (PARP) inhibitors [4]. In particular, the introduction of a CF3 group into a drug candidate enhances the chemical and metabolic stability of the compound, improves lipophilicity and bioavailability, and even increases protein binding affinity [5], [6], [7].

The structure of the title compound was clarified by spectroscopy and X-ray diffraction. The crystal structure shows that there is one molecule in the asymmetric unit (cf. the figure). The crystal structure shows that the molecules are stabilized by intermolecular hydrogen bonds: O2⋯H1O-O1 (distance = 1.974 Å), O1-H1O-O2 and the packing is stabilized by the van der Waals forces. All bond lengths and angles are comparable to those in the literature [8], [9], [10].

Acknowledgements

This work was supported by the Major Social Development Project (SY20143054), the Science and Technology Program of Guizhou province ([2017]1049) and the Science and Technology Cooperation Program of Guizhou province (LH20167442).

References

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2. Sheldrick, G. M.: SHELXTL, Version 6.10. Bruker AXS Inc., Madison, WI, USA (2000).Search in Google Scholar

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10. Machura, B.; Wolff, M.; Switlicka, A.; Kruszynski, R.; Kusz, J.: Nucleophilic addition of water to 1-isoquinolinyl phenyl ketone. the synthesis, spectroscopic investigation, crystal and molecular structure and DFT calculations of [ReOBr2(iquinpk-OH)(PPh3)]. Inorg. Chem. Commun. 12 (2009) 789–792.10.1016/j.inoche.2009.06.019Search in Google Scholar

Received: 2019-12-24
Accepted: 2020-02-10
Published Online: 2020-03-25
Published in Print: 2020-04-28

©2020 Qin Yi et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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