Home Crystal structure of 3,5-bis(trifluoromethyl)benzyl(Z)-N-(adamantan-1-yl)morpholine-4-carbothioimidate, C24H28F6N2OS
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Crystal structure of 3,5-bis(trifluoromethyl)benzyl(Z)-N-(adamantan-1-yl)morpholine-4-carbothioimidate, C24H28F6N2OS

  • Lamya H. Al-Wahaibi , Hanan M. Hassan , Hazem A. Ghabbour and Ali A. El-Emam EMAIL logo
Published/Copyright: April 7, 2018

Abstract

C24H28F6N2OS, monoclinic, P21/n (no. 14), a = 17.4112(7) Å, b = 8.3694(3) Å, c = 17.6728(7) Å, β = 104.612(2)°, V = 2492.01(17) Å3, Z = 4, Rgt(F) = 0.0603, wR(F2) = 0.1704, T = 293(2) K.

CCDC no.: 1554936

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.42 × 0.34 × 0.28 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.19 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω-scans
θmax, completeness:26.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:26357, 5167, 0.057
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3308
N(param)refined:335
Programs:Bruker programs [1], SHELX [2, 3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
S10.74067(4)0.24130(8)0.56371(4)0.0433(2)
O10.83848(19)0.7745(3)0.72353(16)0.0952(10)
N10.84078(14)0.4293(3)0.50348(14)0.0502(6)
N20.79458(13)0.5379(3)0.60408(12)0.0434(6)
F3a0.5828(12)0.9107(7)0.4909(5)0.107(4)
F2a0.6364(8)0.8896(8)0.4043(10)0.111(5)
F1a0.5144(7)0.9047(7)0.3763(13)0.149(8)
F3Xb0.6455(11)0.8995(12)0.4613(17)0.179(12)
F2Xb0.5712(16)0.8959(8)0.3507(6)0.114(7)
F1Xb0.5226(12)0.9104(8)0.4450(16)0.128(8)
F40.51677(19)0.2225(4)0.27293(17)0.1415(13)
F50.4271(2)0.2183(4)0.32730(15)0.1325(12)
F60.43164(18)0.3988(3)0.24657(14)0.1293(12)
C10.76999(18)0.2856(4)0.38090(18)0.0617(9)
H1A0.73100.23880.40500.074*
H1B0.74920.38650.35740.074*
C20.7853(2)0.1731(6)0.3180(2)0.0792(12)
H2A0.73520.15400.27890.095*
C30.8174(2)0.0145(5)0.3550(2)0.0852(12)
H3A0.7799−0.03310.38060.102*
H3B0.8250−0.05860.31480.102*
C40.8962(2)0.0434(5)0.4143(2)0.0738(10)
H4A0.9172−0.05890.43770.089*
C50.88244(18)0.1542(4)0.47870(18)0.0580(8)
H5A0.93230.17230.51720.070*
H5B0.84580.10440.50480.070*
C60.84833(17)0.3142(4)0.44330(17)0.0520(7)
C70.8445(3)0.2472(6)0.2781(2)0.0949(14)
H7A0.82410.34790.25410.114*
H7B0.85280.17650.23750.114*
C80.9229(2)0.2750(6)0.3389(2)0.0836(12)
H8A0.96100.32430.31360.100*
C90.9083(2)0.3866(5)0.4018(2)0.0741(10)
H9A0.88820.48780.37830.089*
H9B0.95810.40680.44000.089*
C100.9557(2)0.1183(6)0.3751(2)0.0881(13)
H10A1.00570.13600.41340.106*
H10B0.96520.04710.33510.106*
C110.79946(15)0.4142(3)0.55185(15)0.0402(6)
C120.8309(2)0.6890(4)0.59025(19)0.0630(9)
H12A0.81050.72110.53620.076*
H12B0.88800.67580.60010.076*
C130.8126(3)0.8150(4)0.6433(2)0.0821(12)
H13A0.83770.91420.63430.099*
H13B0.75570.83280.63010.099*
C140.8028(3)0.6284(5)0.7365(2)0.0881(13)
H14A0.74570.64250.72460.106*
H14B0.82110.59980.79130.106*
C150.8217(2)0.4958(4)0.68769(16)0.0602(9)
H15A0.87850.47680.70140.072*
H15B0.79560.39850.69770.072*
C160.64939(16)0.3355(3)0.57318(16)0.0434(7)
H16A0.61470.25460.58570.052*
H16B0.66180.41120.61610.052*
C170.60671(15)0.4209(3)0.50009(15)0.0367(6)
C180.61071(15)0.5860(3)0.49397(16)0.0413(6)
H18A0.64000.64520.53590.050*
C190.57148(16)0.6628(3)0.42606(17)0.0434(7)
C200.52695(17)0.5795(3)0.36298(16)0.0450(7)
H20A0.50040.63230.31760.054*
C210.52274(16)0.4147(3)0.36894(16)0.0428(6)
C220.56284(15)0.3371(3)0.43677(15)0.0398(6)
H22A0.56000.22630.43950.048*
C230.5765(2)0.8415(4)0.4216(2)0.0635(9)
C240.4745(2)0.3184(4)0.30347(19)0.0635(9)
  1. Occupancies: a = 0.555(19), b = 0.445(19).

Source of material

To a solution of N-(adamantan-1-yl)morpholine-4-carbothioamide (560 mg, 2 mmol) in anhydrous acetone (15 mL), 3,5-bis(trifluoromethyl)benzyl bromide (614 mg, 2.0 mmol) and anhydrous potassium carbonate (276 mg, 2 mmol) were added and the mixture was heated under reflux for 4 h. The solvent was then distilled off and the resulting residue was washed with water (20 mL), dried and crystallized from aqueous ethanol to yield 730 mg (72%) of the title compound (C24H28F6N2OS) as colorless block crystals. M.P.: 379–381 K. Single crystals suitable for X-ray analysis were obtained by slow evaporation of ethanolic solution at room temperature. 1H NMR (CDCl3, 700.17 MHz): δ 1.53–1.56 (m, 12H, adamantane-H), 1.85–1.87 (m, 3H, adamantane-H), 3.10–3.12 (m, 4H, morpholine-H), 3.68–3.70 (m, 4H, morpholine-H), 4.17 (s, 2H, benzylic CH2), 7.95 (s, 1H, Ar—H), 8.0 (s, 2H, Ar—H). 13C NMR (CDCl3, 176.08 MHz): δ 29.16, 29.66, 35.25, 54.85 (adamantane-C), 36.41 (benzylic CH2), 49.76, 66.20 (morpholine-C), 120.76, 122.72, 130.39, 142.78 (Ar—C), 124.89 (CF3), 148.37 (C=N). ESI-MS, m/z: 507.2 [M + H]+.

Experimental details

Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

Discussion

Adamantane-based analogues were proved to possess significant inhibitory activity against human immunodeficiency viruses (HIV) [4], [5], [6], [7]. Several adamantane-based drugs are currently used as useful medications for the control central nervous disorders [8, 9] . In addition, potent antimicrobial [10], [11], [12], anticancer [13], anti-inflammatory [14, 15] and hypoglycemic [16] activities were reported for numerous adamantane-based derivatives. Isothiourea derivatives were recognized as essential pharmacophore of value in medicinal chemistry possessing significant antiviral [17], anticancer [18] and antibacterial [19] activities. The title adamantane-isothiourea hybrid molecule was recently proved to possess potent broad spectrum antibacterial activity [20].

The asymmetric unit of the title structure contains one independent molecule. The morpholine moiety adopts the usual chair conformation. The C11—S1—C16—C17 torsion angle is 65.0(2)°, which indicates the folding of the backbone of the title molecule. One of the trifluromethyl groups is disordered over two sets of sites in a ratio of 0.554(10): 0.446(10). The molecules packed in the crystal structure without any classical intermolecular hydrogen bonds.

Acknowledgements

This work was funded by the Deanship of Scientific Research at Princess Nourah bint Abdulrahman University through the Research Group Program (Grant No. RGP-1438–0010).

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Received: 2018-01-08
Accepted: 2018-03-27
Published Online: 2018-04-07
Published in Print: 2018-07-26

©2018 Lamya H. Al-Wahaibi et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  46. Crystal structure of (E)-2,4-diiodo-6-(4-methyl-2-nitrostyryl)phenol, C14H10I2N2O3
  47. Crystal structure of (E)-2,4-dichloro-6-(((4-methoxy-2-nitrophenyl)imino)methyl)phenol, C14H10Cl2N2O4
  48. Crystal structure of (E)-2-bromo-4-chloro-6-(4-methoxy-2-nitrostyryl)phenol, C14H10BrClN2O4
  49. Crystal structure of (E)-4,6-diiodo-2-(((4-methoxy-2-nitrophenyl)imino)methyl)-3-methylphenol, C14H10I2N2O4
  50. The crystal structure of 7-bromo-1-cyclopropyl-8-methyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid an intermediate of the ozenoxacin synthesis, C14H12BrNO3
  51. Crystal structure of bis(N-(1-(pyrazin-2-yl)ethylidene)nicotinohydrazonato-κ3N,N′,O)copper(II) C24H20N10O2Cu
  52. Crystal structure of diaqua-dinitrato-k2O,O′((Z)-N-((E)-1-(pyrazin-2-yl)ethylidene)nicotinohydrazonato-k3N,N′,O)europium(II), C12H14N7O9Eu
  53. Crystal structure of ethyl 4-amino-5-(5-methyl-1-(4-tolyl)-1H-1,2,3-triazole-4-carbonyl)-2-(phenylamino)thiophene-3-carboxylate, C24H23N5O3S
  54. The crystal structure of acridin-10-ium2-carboxybenzoate, C21H15NO4
  55. The crystal structure of 3-((phenylamino)methylene)-1,5-dioxaspiro[5.5]undecane-2,4-dione, C16H17N1O4
  56. Crystal structure of 12-chloro-5,6,7,12-tetrahydrodibenzo[c,f][1,5]oxastibocine, C14H12ClOSb
  57. Crystal structure of 4-((1,3-dioxoisoindolin-2-yl)methyl)phenethyl 4-methylbenzenesulfonate, C24H21NO5S
  58. Crystal structure of 3-methyl-2,3-dihydro-2-thioxoquinazolin-4(1H)-one, C9H8N2OS
  59. Crystal structure of tert-butyl (2-(4-oxo-2-thioxo-1,4-dihydroquinazolin-3(2H)-yl)ethyl)carbamate, C15H19N3O3S
  60. Crystal structure of ethyl 5-formyl-3,4-dimethylpyrrole-2-carboxylate–1-(propan-2-ylidene)thiosemicarbazide (1/1), C14H22N4O3S
  61. Crystal structure of bis-(N′-(5-ethoxycarbonyl-3,4-dimethyl-pyrrol-2-yl-methylidene)-3-hydroxybenzohydrazide-κ2O,N)copper(II) – dimethylformamide (1/2), C40H50N8O10Cu
  62. Crystal structure of bis(acetato-κO)bis{2-((1H-tetrazol-1-yl)methyl)-1H-benzo[d]imidazole-κN}zinc(II), C22H22N12O4Zn
  63. Crystal structure of 4-phenyl-3-((4-phenyl-1H-1,2,3-triazol-1-yl)methyl)-1H-1,2,4-triazole-5(4H)-thione, C17H14N6S
  64. Crystal structure of (Z)-N-(4-nitrophenyl)-3-phenyl-3-(phenylamino)acrylamide, C21H17N3O3
  65. Crystal structure of 1,1′-(pentane-1,5-diyl)bis(3-methyl-1H-imidazol-3-ium)bis(hexafluorophosphate), C13H22F12N4P2
  66. Synthesis and crystal structure of bis(furan-2-ylmethanaminium)-catena-[bis(μ2-phthalato-κ2O:O′)cobalt(II)], C26H24CoN2O10
  67. Crystal structure of methyl (R)-4-(o-chlorobenzoyl)-1-thia-4-azaspiro[4.5]decane-3-carboxylate, C17H20ClNO3S
  68. Crystal structure of 2-[[4-[2-[4-(4-methoxyphenyl)-1-piperazinyl]ethyl]phenyl] methyl]-1H-isoindole-1,3(2H)-dione, C28H29N3O3
  69. The crystal structure of benzenaminium 5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonate hydrate, C21H19NO8S
  70. Crystal structure of semiconducting potassium poly[(μ2-tetraselenido-κ2Se1:Se4)(μ2-pentaselenido-κ1Se1:Se1)argentate(I)], K3AgSe9
  71. Crystal structure of 2-isopropyl-8-methyl-phenanthrene-3,4-dione, C18H16O2
  72. Crystal structure of 2-isopropyl-8,8-dimethyl-5,6,7,8-tetrahydrophenanthrene-3,4-dione, C19H22O2
  73. Crystal structure of (E)-2-(1-((2-aminophenyl)imino)ethyl)-4-bromophenol, C14H13BrN2O
  74. Crystal structure of 1,1-di(4-cyanophenyl)-2,2-diphenylethene, C28H18N2
  75. Crystal structure of bis(hydroxylamido-κ2O,N)-oxido(1H-pyrazole-3-carboxylato-κ2O,N)vanadium(V), C4H7N4O5V
  76. The crystal structure of In1.2B3O5.6(OH)1.4
  77. The crystal structure of chlorido(2-(1H-pyrazol-3-yl)phenolato-κ2N,O)(2-(1H-pyrazol-3-yl)phenol-κN)copper(II), C18H15ClCuN4O2
  78. Crystal structure of 1-heptylpyridazin-1-ium iodide, C11H19N2I
  79. The crystal structure of N-butylpyridinium bis(μ2-dichlorido)-tetrachloridodicopper(II), C18H28N2Cu2Cl6
  80. Crystal structure of 6-hydroxy-5-((2-hydroxy-6-oxocyclohex-1-en-1-yl)(4-methoxyphenyl)methyl)-1,3-dimethylpyrimidine-2,4(1H,3H)-dione, C20H22N2O6
  81. Crystal structure of bis(acetonitrile)-diaqua-dichloridoiron(II), C4H10Cl2N2O2Fe
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