Home Crystal structure of poly[dipoly[aqua-di(µ2-pyrazin-2-olato-κ2N:N′) zinc(II)], C8H8N4O3Zn
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Crystal structure of poly[dipoly[aqua-di(µ2-pyrazin-2-olato-κ2N:N′) zinc(II)], C8H8N4O3Zn

  • Huan Zheng , Sisi Feng ORCID logo EMAIL logo and Liping Lu
Published/Copyright: February 24, 2021

Abstract

C8H8N4O3Zn, tetragonal, P4c2 (no. 116), a = 7.340(1) Å, c = 18.285(4) Å, V = 985.1(3) Å3, Z = 4, Rgt(F) = 0.0404, ωRref(F2) = 0.1214, T = 100 K.

CCDC no.: 2046068

A part of the polymeric title crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.10 × 0.10 × 0.10 mm
Wavelength:Synchrotron radiation (0.720 Å)
μ:2.49 mm−1
Diffractometer, scan mode:mar555,
θmax, completeness:29.3°, >99%
N(hkl)measured, N(hkl)unique, Rint:4206, 1298, 0.065
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1194
N(param)refined:76
Programs:Processing method [1], Bruker [2], SHELX [3], [4], [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Zn11.00001.00000.00000.0095 (3)
Zn20.50000.50000.25000.0088 (3)
O10.2966 (3)0.7034 (3)0.25000.0175 (6)
H1A0.23200.74550.21590.021*
O21.1083 (3)0.7738 (3)0.12711 (11)0.0211 (6)
N10.6498 (3)0.6443 (3)0.16651 (12)0.0130 (5)
N20.8517 (4)0.8268 (3)0.06075 (12)0.0135 (5)
C10.8255 (4)0.6630 (4)0.17325 (14)0.0144 (6)
H10.88270.61230.21520.017*
C20.5665 (4)0.7166 (4)0.10582 (16)0.0180 (6)
H20.43850.70520.09960.022*
C30.6690 (4)0.8054 (4)0.05416 (17)0.0173 (6)
H30.60970.85370.01220.021*
C40.9380 (4)0.7568 (4)0.12042 (15)0.0141 (6)

Source of material

All chemicals were of analytical grade and used without further purification. The 2(1H)-pyrazinone was generated by in situ hydrolysis of 2,2′-di(pyrazine2-yl)-[4,5′-biisoindoline]-1,1′,3,3′-tetraone during the hydrothermal reaction. A mixture of ZnSO4·7H2O (0.3 mmol, 0.0861 g), 2,2′-di(pyrazine2-yl)-[4,5′-biisoindoline]-1,1′,3,3′-tetraone (0.1 mmol, 0.0448 g), distilled water (6 mL) and KOH (1.3 mL, 0.5 mol/L) was placed in a Teflon liner (17 mL) with constant stirring (pH = 8.0 after stirring for 30 min). Faint yellow filtrate and white powder was obtained after the solution was filtered. The filtrate was left at room temperature and brilliant yellow crystals of 1 were obtained after two weeks in 15% yield.

Experimental details

X-ray diffraction data was collected at 100(2) K in the Beijing Synchrotron Radiation Facility (BSRF) beamline 3W1A, which was mounted with a MARCCD-165 detector (λ = 0.720 Å) with the storage ring working at 2.5 GeV. Data were collected by the MARCCD diffractometer and processed using HKL 2000 [1]. Multi-scan program SADABS was used for absorption correction [2]. The structure was solved by direct methods and refined using the SHELX programs []. The topological analyses were performed on the TOPOS [6].

Comment

Pyrazine molecules have a high symmetry. The N electronegativity and aromaticity of the molecules makes pyrazine the small, convenient and flexible molecule or group for the construction of metal complexes. Studies have shown that pyrazine can form coordination polymers with multi-dimensional network structure [7]. Compared with pyridine heterocycles, pyrazine has more active sites to form hydrogen bonds and coordination bond. When substituents are introduced into pyrazine heterocycles, it is speculated that new hydrogen bond active sites may be formed according to the charge distribution of organic molecules [8]. We recently investigated the formation of a zinc complex containing pyrazine groups by hydrothermal in situ reaction with transition metal self-assembly using 2,2′-di(pyrazine2-yl)-[4,5′-biisoindoline]-1,1′,3,3′-tetraone as a precursor. Here we report the three-dimensional structure of [Zn(2-pyz)2(H2O)]n (1) (2(1H)-pyz = 2(1H)-pyrazinone).

Single crystal X-ray diffraction reveals that the title coordination polymer (see the Figure) crystallizes in the tetragonal space group P4c2 exhibiting an interesting 3D to 3D 2-fold interpenetrated framework. The asymmetric unit contains half a Zn(II) cation (Zn1 and Zn2 with 0.25 occupancy respectively), one 2-pyz anion and half a water molecule. 2(1H)-pyz was generated by in situ hydrolysis of 2,2′-di(pyrazine2-yl)-[4,5′-biisoindoline]-1,1′,3,3′-tetraone. There are two different coordination environments for the two crystallographically independent Zn(II) atoms. Zn1 atom locates in a tetrahedral coordination sphere and is connected to with four N atoms from four different 2-pyz anions with the same Zn-N bond length (Zn1-N = 2.009(1) Å). While Zn2 atom is located in an octahedral coordination geometry defined by four equatorial N atoms with identical Zn-N bond length (Zn2-N = 2.159(1) Å) and two axial water molecules (Zn2-O = 2.111(2) Å). The Zn2 atom lies on a 222 Wyckoff site. Meanwhile, the Zn1 atom lies on a 4 site. The ligand is similar to the Cd compounds [CdX2(2-pyz)2]n (X = halide ions) [9], however, it adopts different coordination modes. It provides one N atom coordinated with cadmium in [CdX2(2-pyz)2]n, but each 2-pyz provides two N atoms coordinated with two different zinc ions in 1. Every 2-pyz building block connects with two Zn atoms in a bidentate fashion and acts as a linker, just like 4,4-bipyridine, due to its terminal N atoms. The four-coordinated Zn atoms connect with the six-coordinated Zn atoms through 2-pyz building blocks in different directions to expand to 3D network with large cavities. Eight four-coordinated Zn atoms lie in the vertex of the cage and six hexa-coordinated Zn atoms situate in the center of faces or edges of the cage, leaving two types of windows. The presence of large cavities induces self-catenation in the framework to stabilize the whole structure. As a result of 2-fold self-interpenetration, the pore volume reduces significantly. From the topological view, we can simpliy assign the Zn atoms as 4-connected nodes, and the 2-pyz anions as linkers. The whole structure contains two identical networks, which are of the same topological structure. Each of the interpenetrated networks can be defined as an intriguing (4,4)-connected framework with the net symbol of (42.84).


Corresponding authors: Sisi Feng and Liping LU, Institute of Molecular Science, Key Laboratory of Chemical Biology and Molecular Engineering of the Education Ministry, Shanxi University, Taiyuan, Shanxi030006, People’s Republic of China, E-mail: (S. Feng), (L. Lu)

Award Identifier / Grant number: 21671124

Funding source: Scientific Instrument Center of Shanxi University of China

Acknowledgments

We acknowledge Zengqiang Gao (BSRF) for the help of single-crystal X-ray diffraction data collection (line 3 W1A).

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Natural Science Foundation of China (Grant No 21671124) and the Scientific Instrument Center of Shanxi University of China.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2021-01-14
Accepted: 2021-02-01
Published Online: 2021-02-24
Published in Print: 2021-05-26

© 2021 Huan Zheng et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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