Home Crystal structure of (OC‐6‐13)‐aqua‐tris (3‐bromopyridine‐κ1N)‐bis(trifluoroacetato‐κ1O)cadmium(II) C19H14Br3CdF6N3O5
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Crystal structure of (OC‐6‐13)‐aqua‐tris (3‐bromopyridine‐κ1N)‐bis(trifluoroacetato‐κ1O)cadmium(II) C19H14Br3CdF6N3O5

  • Lan Zhang ORCID logo EMAIL logo , Lu Wang , Wu-Xiu Ding , Qiang Wang and Meng-Juan Chen
Published/Copyright: February 1, 2021
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Zeitschrift für Kristallographie - New Crystal Structures
From the journal Zeitschrift für Kristallographie - New Crystal Structures Volume 236 Issue 3

Abstract

C19H14Br3CdF6N3O5, triclinic, P1‾ (no. 2), a = 9.2591(4) Å, b = 9.6573(5) Å, c = 16.9256(9) Å, α = 102.707(2) Å, β = 96.854(2) Å, γ = 112.550(2) Å, V = 1328.20(12) Å3, Z = 2, Rgt (F2) = 0.0291, wRref(F2) = 0.0625, T = 150.15 K.

CCDC no.: 2056381

Table 1 contains crystallographic data, and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size0.15 × 0.11 × 0.10 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:5.41 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:26.4°, >99 %
N(hkl)measured, N(hkl)unique, Rint:28241, 5452, 0.042
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4422
N(param)refined:372
Programs:Bruker [1], SHELX [2], Diamond [3], Olex2 [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cd10.30460 (3)0.68572 (3)0.69225 (2)0.03136 (7)
Br10.68636 (5)0.30490 (5)0.64930 (3)0.04763 (11)
Br2−0.23747 (5)0.60816 (5)0.86902 (3)0.05333 (12)
Br30.73100 (5)0.97817 (5)1.03919 (2)0.05318 (12)
F10.3589 (3)1.0221 (3)0.49948 (16)0.0584 (6)
F20.1073 (3)0.9036 (3)0.45142 (16)0.0641 (7)
F30.2015 (4)1.0589 (3)0.57501 (16)0.0669 (7)
F4a0.1415 (19)0.3070 (16)0.9060 (11)0.098 (4)
F4Ab0.3769 (19)0.500 (2)0.9347 (11)0.087 (5)
F5a0.3309 (13)0.5375 (10)0.9474 (6)0.108 (4)
F5Ab0.170 (3)0.290 (2)0.9007 (17)0.073 (6)
F6a0.3659 (8)0.3350 (9)0.8789 (5)0.128 (3)
F6Ab0.1227 (15)0.4828 (13)0.9267 (6)0.103 (4)
O10.3370 (3)0.8566 (3)0.61373 (15)0.0365 (5)
O20.1032 (3)0.6880 (3)0.52694 (15)0.0412 (6)
O30.3079 (3)0.5588 (3)0.79412 (16)0.0433 (6)
O40.0998 (4)0.3243 (4)0.75271 (19)0.0766 (11)
O50.1291 (3)0.4374 (3)0.61826 (16)0.0445 (6)
H5A0.0425760.4367840.5880480.067*
H5B0.0881330.3818150.6524290.067*
N10.5051 (3)0.6284 (3)0.64113 (17)0.0336 (6)
N20.1125 (3)0.7632 (3)0.74139 (18)0.0349 (6)
N30.5056 (3)0.9057 (3)0.80080 (18)0.0349 (6)
C10.2184 (4)0.8155 (4)0.5550 (2)0.0328 (7)
C20.2200 (4)0.9501 (4)0.5195 (2)0.0391 (8)
C30.2166 (5)0.4317 (4)0.8017 (2)0.0423 (9)
C4a0.2698 (13)0.4017 (13)0.8843 (6)0.060 (2)
C4Ab0.216 (3)0.428 (2)0.8936 (12)0.050 (4)
C50.5326 (4)0.5089 (4)0.6548 (2)0.0355 (8)
H50.4700830.4476230.6856530.043*
C60.6497 (4)0.4726 (4)0.6253 (2)0.0351 (8)
C70.7413 (4)0.5573 (4)0.5788 (2)0.0392 (8)
H70.8221450.5327720.5580120.047*
C80.7096 (4)0.6787 (4)0.5642 (2)0.0420 (9)
H80.7681480.7394530.5320090.050*
C90.5928 (4)0.7117 (4)0.5963 (2)0.0404 (8)
H90.5736650.7968700.5862780.048*
C100.0088 (4)0.6794 (4)0.7796 (2)0.0370 (8)
H100.0099410.5840300.7851100.044*
C11−0.1001 (4)0.7275 (4)0.8114 (2)0.0366 (8)
C12−0.1071 (4)0.8636 (4)0.8021 (2)0.0407 (8)
H12−0.1839000.8962360.8220820.049*
C13−0.0001 (5)0.9500 (5)0.7631 (2)0.0441 (9)
H13−0.0006741.0446530.7560100.053*
C140.1086 (4)0.8977 (4)0.7343 (2)0.0388 (8)
H140.1837500.9593530.7083050.047*
C150.5502 (4)0.8920 (4)0.8760 (2)0.0346 (7)
H150.4957060.7953530.8873260.041*
C160.6722 (4)1.0132 (4)0.9374 (2)0.0390 (8)
C170.7517 (5)1.1547 (5)0.9230 (3)0.0552 (11)
H170.8354961.2398300.9648280.066*
C180.7058 (6)1.1688 (5)0.8462 (3)0.0683 (14)
H180.7588561.2644110.8336170.082*
C190.5821 (5)1.0433 (5)0.7870 (3)0.0543 (11)
H190.5503411.0556100.7344670.065*

  1. aOccupancy: 0.655(8). bOccupancy: 0.345(8).

Source of material

All reagents were of analytical grade and used as purchased. A mixture of cadmium hydroxide (0.002 mol, 0.294 g), trifluoroacetic acid (HTFA) (0.004 mol, 0.459 g) and ethanol (30 mL) were added to a conical flask in turn. After refluxing for 1 h, 3-bromopyridine (3-BP) (0.006 mol, 0.950 g) was added and mixed with stirring. Continuous heating under reflux was performed for 4 h. The solution was cooled, filtered and recrystallized. Colorless block crystals of the title compound were obtained after 1 month.

Experimental details

The structure was solved by SHELXT with direct methods. Absorption corrections were applied by using multi-scan program [1]. One of the CF3 groups was refined with a disorder model, and ISOR and RIGU restraints were applied to get a proper model (see the Figure). All the hydrogen on C were placed at calculated positions (0.95 Å) and refined with the riding model, with Uiso(H) set to 1.2Ueq(C). The H atoms of the water molecule were located from the difference Fourier map.

Comment

With the increasing interest in the CF3 group for the development of pharmaceuticals, agricultural chemicals and functional materials, fluorine-containing compounds have received significant attention [5], [6], [7], [8]. Especially the incorporation of CF3-containing groups has been an efficient strategy for the design of new drugs and agrochemical [9]. 3-Bromopyridine (C5H4BrN, 3-BP) is an important pyridine derivative which exhibits biological and pharmacological performance. In some studies, it has been shown that derivatives and metal complexes of 3-BP show antidepressant, antibacterial and catalytic properties [10], [, 11].

The asymmetric unit of the title compound [Cd(C2F3O2)2(C5H4Br)3(H2O)] consists of a mononuclear Cd(II) complex (see the Figure). The geometry about central Cd(II) is a slightly distorted octahedron, the ligating atoms being two O atoms from two trans-coordinated TFA anions (O1 and O3), one O atom from a H2O molecule (O5), and two N atoms from two 3–BP ligands (N1 and N2). The axial positions are occupied by O5 and N3 atoms. The four equatorial O1, O3, N1 and N2 atoms are not coplanar, and the coordination plane comprising O1, N1 and N2 makes a dihedral angle of 9.47(9)° with the plane formed by atoms O3, N1 and N2. The trans angles of O1–Cd1–O3 and N1–Cd1–N2 are 168.04(9) and 175.30(10)°, respectively, which are slightly deviating from linearity. The cis angles of N–Cd–N are 87.61(10) and 90.13(10)°, while the O–Cd–O bond angles are 80.14(9) and 111.81(9)°. The Cd–N bond lengths are in the range of 2.337(3) to 2.406(3) Å that are in agreement with that found in [Cd(CH3COO)2(C6H6N2O)2] [12]. The bond lengths of Cd–O fall in the range of 2.272(2) to 2.329(2) Å, which are comparable with the values for the similar complex [Cd(CH3COO)2(C6H7N3O)2]⋅2C2H5OH [13]. The oxygen of the water molecule in the structure of the title compound participates in the formation of intermolecular hydrogen bond (O5–H5A⋯O21: 2.750(3) Å and 135.6°: −x, −y+1, −z+1) and intramolecular hydrogen bond (O5–H5A⋯O4: 2.731(4) Å and 153.4°) with TFA anions.

Corresponding author: Lan Zhang, School of Environmental Engineering and Chemistry, Luoyang Institute of Science and Technology, LuoyangHenan471023, People’s Republic of China, E-mail:

Funding source: National Natural Science Foundation of China

Award Identifier / Grant number: 51279073

Funding source: Project of Science and Technology in Henan Province

Award Identifier / Grant number: 152102310108

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: The National Natural Science Foundation of China (No. 51279073), the Project of Science and Technology in Henan Province (No. 152102310108).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2020-12-16
Accepted: 2021-01-18
Published Online: 2021-02-01
Published in Print: 2021-05-26

© 2021 Lan Zhang et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  60. Crystal structure of 1‐tert‐butyl‐3‐(2,6‐diisopropyl‐4‐phenoxyphenyl)‐2-methylisothiourea, C24H34N2OS
  61. Crystal structure of catena-poly[triaqua-(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2N:N′)-(4,4′-(1H-1,2,4-triazole-3,5-diyl)dibenzoato-κ1O)cobalt(II)] — N,N′-dimethylformamide (1/1), C28H34N8O8Co
  62. Crystal structure of tetraaqua-bis(1,4-di(1H-imidazol-1-yl)benzene-κ1N)manganese(II) 2,3-dihydroxyterephthalate, C32H32MnN8O10
https://doi.org/10.1515/ncrs-2020-0631
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Articles in the same Issue

  1. Frontmatter
  2. New Crystal Structures
  3. The crystal structure of bis(μ2-5-chloro-2-oxido-N-(1-oxidoethylidene)benzohydrazonato-κ5N,O,O′:N′,O′′)hexkis(pyridine-κ1N)trinickel(II) - pyridine (1/1), C63H57Cl2N13Ni3O6
  4. Crystal structure of [(μ2-succinato κ3O,O′:O′′)-bis-(5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane)]dinickel(II)] diperchlorate, dihydrate C36H82Cl2N8Ni2O15
  5. Crystal structure of catena-poly[aquabis(3-nitrobenzoato-κ2O:O′)-(μ2-pyrazine-N: N′)cadmium(II)], C18H14N4O9Cd
  6. Crystal structure of 4-(2,2-difluoroethyl)-2,4,6-trimethylisoquinoline-1,3(2H,4H)-dione, C14H15F2NO2
  7. The crystal structure of thioxanthen-9-one-10,10-dioxide, C13H8O3S – a second polymorph
  8. Crystal structure of (E)-2-((2-methoxy-3-pyridyl)methylene)-7-fluoro-3,4-dihydronaphthalen-1(2H)-one, C17H14FNO2
  9. The crystal structure of diaquahydrogen 2,5-dimethylbenzenesulphonate, C8H14O5S
  10. The crystal structure of N-(4-(cyclohexylimino)pent-2-en-2-yl)cyclohexanamine, C17H30N2
  11. The twinned crystal structure of 1,3-phenylenedimethanaminium dibromide, C8H14Br2N2
  12. Crystal structure of 2,4,7,9-tetranitro-10H-benzofuro[3,2-b]indole – dimethyl sulfoxide (1/1), C16H11N5O10S
  13. Crystal structure of 2,6-bis(2-(pyridin-3-yl)ethyl)pyrrolo[3,4-f]isoindole-1,3,5,7(2H,6H)-tetraone, C24H18N4O4
  14. The crystal structure of 3,4-dichlorobenzoic acid chloride, C7H3Cl3O
  15. Crystal structure of 1,1′-(1,4-phenylenebis(methylene))bis(pyridin-1-ium) bis(1,2-dicyanoethene-1,2-dithiolato-k2S:S)zinc(II), C26H18N6ZnS4
  16. Crystal structure of tetrakis(μ-naphthalene-1-carboxylato-κ2O,O′)bis(methanol)copper(II), C46H36Cu2O10
  17. Crystal structure of 9-methyl-3-methylene-1,2,3,9-tetrahydro-4H-carbazol-4-one, C14H13NO
  18. Crystal structure of bis(amino(carbamothioylamino)methaniminium) 3-nitrophthalate monohydrate, C12H19N9O7S2
  19. Crystal structure of 3,3′-(1,2-phenylene-bis(methylene))bis(1-ethyl-1H-imidazol-3-ium) bis(hexafluorophosphate), C18H24F12N4P2
  20. The crystal structure of 5-hydroxy-6,8-dimethoxy-2-methyl-4H-benzo[g]chromen-4-one– rubrofusarin B, C16H14O5
  21. The crystal structure of bis(ethanol-kO)- bis(6-aminopicolinato-k2N,O)manganese(II), C16H22O6N4Mn
  22. The crystal structure of 3,3′-((carbonylbis(azanediyl))bis(ethane-2,1-diyl)) bis(1-methyl-1H-benzo[d]imidazol-3-ium) tetrafluoroborate monohydrate, C21H28N6O3B2F8
  23. Crystal structure of dimethanol-dichlorido-bis( μ2-2-(((1,5-dimethyl-3-oxo-2- phenyl-2,3-dihydro-1H-pyrazol-4-yl)imino)methyl)phenolato- κ4O:O,O′,N)dinickel (II), C20H24ClNiN3O4
  24. The crystal structure of methyl 5-(trifluoromethyl)-1H-pyrrole-2-carboxylate, C7H6F3NO2
  25. Crystal structure of (OC‐6‐13)‐aqua‐tris (3‐bromopyridine‐κ1N)‐bis(trifluoroacetato‐κ1O)cadmium(II) C19H14Br3CdF6N3O5
  26. Crystal structure of methyl (E)-3-(4-(2-ethoxy-2-oxoethoxy)phenyl) acrylate, C14H16O5
  27. Crystal structure of methyl 4-acetoxy-3,5-dimethoxybenzoate, C12H14O6
  28. The crystal structure of 2-(1H-benzimidazol-2-yl)-3-bromo-5-chlorophenol, C13H8BrClN2O
  29. The crystal structure of bis(μ2-5-chloro-N-(2-methyl-1-oxidopropylidene)-2-oxidobenzohydrazonate-κ5N,O,O′:N′,O′′)pentakis(pyridine-κ1N)tricopper(II), C47H45Cl2N9Cu3O6
  30. Synthesis and crystal structure of catena-poly[aqua-bis(nitrato-κ2O:O′)- (μ2-((1 H-imidazol-1-yl)methyl)benzene-κ2 N,N′)-H2O-κ2O]cadmium(II), C14H16N6O7Cd
  31. The crystal structure of pentakis(carbonyl)-{μ-[2,3-bis(sulfanyl)propan-1-olato]}-(triphenylphosphane)diiron (Fe–Fe)C26H21Fe2O6PS2
  32. Crystal structure of ethyl-2-(3-benzoylthioureido)propanoate, C13H16N2O3S
  33. Crystal structure of 2-methoxy-4b,5,14,15-tetrahydro-6H-isoquinolino[2′,1′:1,6] pyrazino[2,3-b]quinoxaline, C19H18N4O
  34. Crystal structure of 2,2′-[ethane-1,2-diylbis(azanylylidenemethylylidene)]bis(6-chlorophenol), C16H14Cl2N2O2
  35. The crystal structure of (Z)-3-((2-(2-(2-aminophenoxy)ethoxy)phenyl)amino)-1-phenylbut-2-en-1-one, C24H24N2O3
  36. The crystal structure of 10-(3,5-di(pyridin-4-yl)phenyl)-10H-phenoxazine dihydrate, C28H23N3O3
  37. Crystal structure of poly[dipoly[aqua-di(µ2-pyrazin-2-olato-κ2N:N′) zinc(II)], C8H8N4O3Zn
  38. Crystal structure of poly[tetra(μ2-cyanido-κ2N:O)-bis(N,N-dimethylformamide-κO)-manganese(II)-platinum(II)], C10H14MnN6O2Pt
  39. The crystal structure of aqua-chlorido-6,6′-((ethane-1,2-diylbis(azaneylylidene))bis(methaneylylidene))bis(2,4-dichlorophenolato-κ4N,N′,O,O′)manganese(III), C16H12Cl5MnN2O3
  40. Crystal structure of [di(µ2-cyanido)-dicyanido-bis(dimethyl sulfoxide-κO)- bis(2,2′-(ethane-1,2-diylbis(azanylylidenemethanylylidene))diphenolato-κ4,N,N′,O,O′)- dimanganese(III)-platinum(II)], C40H40Mn2N8O6PtS2
  41. The crystal structure of (azido)-κ1N-6,6′-((cyclohexane-1,2-diylbis(azanylylidene)) bis(methanylylidene))bis(3-bromophenolato-κ4N,N,O,O)-(methanol)-manganese(III)–methanol(1/1), C22H26Br2MnN5O4
  42. Crystal structure of 7-chloro-N-(4-iodobenzyl)-1,2,3,4-tetrahydroacridin-9-amine, C20H18ClIN2
  43. Crystal structure of catena-poly[(1,4,8,11-tetraazacyclotetradecane-κ4N,N′,N″,N′′′)-bis(μ2-thiocyanato-κ2N:S)-bis(thiocyanato-κS)-nickel(II)palladium(II)], C14H24N8NiPdS4
  44. Crystal structure of 3-chloro-4-(4-ethylpiperazin-1-yl)aniline monohydrate, C12H20ClN3O
  45. Crystal structure of the 2D coordination polymer poly[diaqua-bis(μ2-3- methoxyisonicotinato-κ2N:O)cobalt(II)] — dimethylformamide (1/1), C20H30CoN4O10
  46. Crystal structure of 4-[(5-chloro-2-hydroxybenzylidene)amino]-3-propyl-1H-1,2,4-triazole-5(4H)-thione, C12H13ClN4OS
  47. Crystal structure of N-(5-(2-(benzyl(1-(4-methoxyphenyl)propan-2-yl)amino)-1-hydroxyethyl)-2-(benzyloxy)phenyl)formamide, C33H36N2O4
  48. Crystal structure of 3-(methoxycarbonyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid, C9H12O5
  49. The crystal structure of 1-((dimethylamino)(3-nitrophenyl)methyl)naphthalen-2-ol, C19H18N2O3
  50. Crystal structure of catena-poly[di(μ2-cyanido-κ2C:N)-dicyanido-tetrakis(dimethyl sulfoxide-κO)-manganese(II)-platinum(II)], C12H24MnN4O4PtS4
  51. Crystal structure of 4-amino-N-(2-pyrimidinyl)benzenesulfonamide–1,4-dioxane (1/1), C14H18N4O4S
  52. Crystal structure of bis{1-[(benzotriazol-1-yl)methyl]-1H-1,3-(2-methyl-imidazol)}di-chloridomercury(II), [Hg(C11H11N5)2Cl2], C22H22N10Cl2Hg
  53. Crystal structure of 2, 3-bis((4-methylbenzoyl)oxy) succinic acid–N, N-dimethylformamide (1/1), C23H25NO9
  54. Crystal structure of catena-poly[bis(4-(4-carboxyphenoxy)benzoato-κ1O)-μ2-(1,4-bis(1-imidazolyl)benzene-κ2N:N′)cobalt(II)], C40H28N4O10Co
  55. Crystal structure of 1H-imidazol-3-ium poly[aqua-(μ4-glutarato-κ6O,O′:O′:O′′,O′′′:O′′′)-(nitrato-κ2O,O′)strontium(II)], C8H13N3O8Sr
  56. Crystal structure of (R)-6-(benzo[b]thiophen-5-yl)-2-methyl-2,6-dihydrobenzo [5,6] silino[4,3,2-cd]indole, C23H17NSSi
  57. Crystal structure of catena-poly[bis(μ2-thiocyanato-κ2N:S)-(2-(5-methyl-1H-pyrazol-3-yl)pyridine-κ2N,N′)cadmium(II)]–dioxane (1/1), C15H17CdN5O2S2
  58. Crystal structure of poly[aqua-(μ2-1,4-bis(2′-carboxylatophenoxy)benzene-κ2O:O′)-(μ2-4,4′-bipyridione-κ2N:N′)cadmium(II)] monhydrate, C30H22CdN2O7⋅H2O
  59. Crystal structure of catena-poly[tetraaqua-(μ2-4,4′-bipyridine-k2N:N′)-bis(μ2-4′-methyl-[1,1′-biphenyl]-3,5-dicarboxylato-k4O,O′:O″,O′″)dicadmium(II)] dihydrate, C20H20NO7Cd
  60. Crystal structure of 1‐tert‐butyl‐3‐(2,6‐diisopropyl‐4‐phenoxyphenyl)‐2-methylisothiourea, C24H34N2OS
  61. Crystal structure of catena-poly[triaqua-(μ2-1,3-di(1H-imidazol-1-yl)propane-κ2N:N′)-(4,4′-(1H-1,2,4-triazole-3,5-diyl)dibenzoato-κ1O)cobalt(II)] — N,N′-dimethylformamide (1/1), C28H34N8O8Co
  62. Crystal structure of tetraaqua-bis(1,4-di(1H-imidazol-1-yl)benzene-κ1N)manganese(II) 2,3-dihydroxyterephthalate, C32H32MnN8O10
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