Home Crystal structure of triaqua-bis(2-(6-hydroxy-5-(hydroxymethyl)-5,8a-dimethyl-2-methylenedecahydronaphthalen-1-yl)-1-(2-oxo-2,5-dihydrofuran-3-yl)ethane-1-sulfonato-κ2O,O′)calcium(II) – ethanol (1/2), C44H76CaO19S2
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Crystal structure of triaqua-bis(2-(6-hydroxy-5-(hydroxymethyl)-5,8a-dimethyl-2-methylenedecahydronaphthalen-1-yl)-1-(2-oxo-2,5-dihydrofuran-3-yl)ethane-1-sulfonato-κ2O,O′)calcium(II) – ethanol (1/2), C44H76CaO19S2

  • Yuan-Min Ding ORCID logo , Rui-Peng Li , Ying-Jie Chang , Jie Zhao , Hong-Min Liu and Wen Li EMAIL logo
Published/Copyright: January 25, 2020

Abstract

C44H76CaO19S2, monoclinic, C2 (no. 5), a = 25.5446(14) Å, b = 7.38025(19) Å, c = 18.8450(10) Å, β = 136.543(10)°, Z = 2, V = 2443.6(4) Å3, Rgt(F) = 0.0419, wRref(F2) = 0.1161, T = 293(2) K.

CCDC no.: 1881358

The molecular structure is shown in the figure (The ethanol solvent was omitted for clarity). Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless prism
Size:0.18 × 0.14 × 0.10 mm
Wavelength:Cu Kα radiation (1.54184 Å)
μ:2.54 mm−1
Diffractometer, scan mode:Xcalibur, ω
θmax, completeness:70.9°, >99%
N(hkl)measured, N(hkl)unique, Rint:11865, 4221, 0.027
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4143
N(param)refined:311
Programs:Bruker [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.78585(15)0.2250(4)0.9026(2)0.0288(6)
H1A0.78870.15300.94830.035*
H1B0.82560.18350.90990.035*
C20.70815(18)0.1944(5)0.7908(2)0.0360(7)
H2A0.70280.06750.77300.043*
H2B0.66800.22500.78450.043*
C30.70035(15)0.3090(5)0.7174(2)0.0327(7)
H30.74280.27810.72760.039*
C40.70496(16)0.5136(5)0.7368(2)0.0297(6)
C50.78410(15)0.5426(4)0.8521(2)0.0249(6)
H50.82140.50030.85390.030*
C60.80399(17)0.7421(5)0.8829(2)0.0334(6)
H6A0.77160.79260.88770.040*
H6B0.79490.80880.83040.040*
C70.88803(18)0.7624(6)0.9875(2)0.0379(7)
H7A0.92080.72310.98130.045*
H7B0.89920.88841.00870.045*
C80.90234(16)0.6491(5)1.0661(2)0.0306(6)
C90.88763(15)0.4497(4)1.0387(2)0.0247(6)
H90.91560.41711.02310.030*
C100.80007(14)0.4243(4)0.9351(2)0.0229(6)
C110.91789(15)0.3265(5)1.1279(2)0.0290(6)
H11A0.90200.20271.10330.035*
H11B0.89620.36411.15150.035*
C121.00578(15)0.3339(5)1.2193(2)0.0304(6)
H121.02070.46151.22990.037*
C131.04452(17)0.2336(7)1.1985(2)0.0405(8)
C141.0565(3)0.0604(8)1.2002(4)0.0602(12)
H141.0423−0.03201.21700.072*
C151.0968(4)0.0355(13)1.1709(5)0.096(3)
H15A1.1461−0.02101.22660.115*
H15B1.0671−0.03971.10980.115*
C161.0750(3)0.3358(12)1.1675(4)0.0782(19)
C170.91799(19)0.7221(6)1.1440(3)0.0422(8)
H17A0.92040.84731.15120.051*
H17B0.92660.64801.19160.051*
C180.7041(2)0.6147(7)0.6650(3)0.0491(10)
H18A0.75220.59920.68900.074*
H18B0.69530.74130.66470.074*
H18C0.66430.56700.59640.074*
C190.63904(17)0.5824(5)0.7186(2)0.0351(7)
H19A0.63480.50570.75600.042*
H19B0.65040.70440.74580.042*
C200.75355(17)0.4772(5)0.9557(2)0.0324(7)
H20A0.70520.41670.90700.049*
H20B0.74570.60590.94840.049*
H20C0.78080.44181.02440.049*
Ca10.50000.31755(12)0.50000.0289(2)
O10.63088(12)0.2641(4)0.61232(16)0.0426(6)
H10.6416(13)0.205(7)0.586(2)0.064*
O20.56760(12)0.5829(4)0.61114(18)0.0411(6)
H20.5414(14)0.672(4)0.601(2)0.062*
O31.1054(3)0.2108(11)1.1514(4)0.112(2)
O41.0767(3)0.4956(10)1.1588(6)0.126(2)
O51.12054(13)0.2773(5)1.41689(17)0.0466(7)
O61.01488(19)0.0681(5)1.3185(2)0.0534(7)
O71.00082(16)0.3665(5)1.3525(2)0.0538(8)
O80.5000−0.0089(7)0.50000.0709(14)
H80.4809−0.04900.52020.106*
O90.49635(17)0.2524(5)0.6170(2)0.0502(7)
H9A0.46490.16550.59380.075*
H9B0.48190.34630.62600.075*
S11.03907(4)0.25393(11)1.33692(5)0.0313(2)
C210.7247(4)0.1840(13)0.5369(6)0.095(2)
H21A0.77080.11940.56930.114*
H21B0.74000.29870.57260.114*
C220.6819(5)0.2215(16)0.4299(7)0.136(4)
H22A0.64380.31150.40190.203*
H22B0.65780.11230.39000.203*
H22C0.71600.26530.42740.203*
O100.6855(3)0.0798(7)0.5523(4)0.0866(14)
H100.6656−0.00930.51450.130*

Source of material

Andrographolide calcium bisulfite (ACB) raw material was got from Jiangsu Jiuxu Pharmaceutical Com. Ltd. The crystals suitable for X-ray analysis were obtained from a mixture of water and ethanol by slow evaporation at room temperature after three days.

Experimental details

All H atoms were included in calculated positions and refined as riding atoms, with the d(C—H) = 0.90–0.97 Å. The Uiso(H) were set to 1.5 times Ueq(C) for the methyl H atoms, at 1.2 times Ueq(C) for all other H atoms. The Flack-Parsons-Wagner parameter x = 0.009(5) [3] was determined using 1606 quotients [(I+) − (I−)]/[(I+) + (I−)].

Comment

Andrographolide was isolated from traditional Chinese medicine Andrographis paniculata Nees, which has been widely used as an anti-inflammatory and anti-microbial drug for treatment of infectious diseases including malaria, HIV, bacterial dysentery, acute tonsillitis and pneumonia [4], [5]. Despite the wide-ranging therapeutic properties of andrographolide, the poor water solubility and instability leads to its low bioavailability and seriously limits its pharmacological function. Andrographolide sodium bisulfite is a water-soluble compound which is synthesized by andrographolide and sodium bisulfite and it has been used as a injection formulation in China for decades. Andrographolide calcium bisulfite is a related impurity of ASB which has been found by us in recent research.

The asymmetric unit contains one andrographolide bisulphite anion, one half of a calcium cation, ethanol molecules and 1.5 water molecules. Calcium cation is coordinated by four hydroxyl groups of the hydronaphthalene ring and three water molecules.

Ca—O bond distances [2.324(2), 2.440(3) Å] are within normal ranges and the value coincides with those observed in reported Ca complexes [6], [7]. In the molecules, two fused cyclohexane rings (C1—C10) adopt standard chair conformation and the dihedral angle between C6—C7—C9—C10 and C7—C8—C9 is 57.2(2)°, and the dihedral angle between C1—C2—C4—C5 and C1—C10—C5 is 45.4(1)°. Flack parameter of crystal structure was refined to 0.009(5), showing that atoms C3, C4, C9 and C12 are R, and atoms C5 and C10 are S configurated.

Acknowledgements

The authors are grateful to the Analysis and Testing Center of Zhengzhou University for use of the single-crystal X-ray diffraction facility. We thank the Science and Technology Bureau of Henan Province for the Cooperation Research Project Fund (No. 152107000041 for WL) and Jiangsu Jiuxu Pharmaceutical Com. Ltd for the financial support.

References

1. Bruker. APEX3, SAINT-Plus, XPREEP. Bruker AXS Inc., Madison, WI, USA (2017).Search in Google Scholar

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3. Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

4. Lee, J. C.; Tseng, C. K.; Young, K. C.; Sun, H.-Y.; Wang, S.-W.; Chen, W.-C.; Lin, C.-K.; Wu, Y.-H.: Andrographolide exerts anti-hepatitis C virus activity by up-regulating haeme oxygenase-1 via the p38 MAPK/Nrf2 pathway in human hepatoma cells. Br. J. Pharmacol. 171 (2014) 237–252.10.1111/bph.12440Search in Google Scholar PubMed PubMed Central

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Received: 2019-09-19
Accepted: 2019-12-20
Published Online: 2020-01-25
Published in Print: 2020-04-28

©2020 Yuan-Min Ding et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  75. The crystal structure of 3-(4-hydroxybenzyl)-1,5-dioxaspiro[5.5]undecane-2,4-dione, C16H18O5
  76. Crystal structure of [[Mo3Se7(S2CNEt2)3]2(μ-Se)] ⋅ 2(C6H4Cl2), C42H68Cl4Mo6N6S12Se15
  77. Crystal structure of (E)-4-hydroxy-3-((5-phenyl-1,3,4-oxadiazol-2-yl)thio)pent-3-en-2-one, C13H12N2O3S
  78. The crystal structure of (2,3-dioxo-5,6:13,14-dibenzo-9,10-benzo-1,4,8,11-7, 11-diene-κ4N,N′,N′′,N′′′)-nickel(II), Ni(C22H14N4O2)
  79. Crystal structure of 3-(1-benzyl-2-ethyl-4-nitro-1H-imidazol-5-ylthio)-propanoic acid, C15H17N3O4S
  80. The crystal structure of dichlorobis(2-(dicyclohexylphosphino)-2′,4′,6′-tri-i-propyl-1,1′-biphenyl) palladium(II)-dichloroform, C68H100Cl8P2Pd
  81. Crystal structure and antimicrobial properties of (1,4,7,10-tetraoxacyclododecane-κ4O,O′,O′′,O′′′)cesium(I) pentaiodide, C16H32CsI5O8
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