Home The crystal structure of 2-(1H-benzimidazol-2-yl)-3-bromo-5-chlorophenol, C13H8BrClN2O
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The crystal structure of 2-(1H-benzimidazol-2-yl)-3-bromo-5-chlorophenol, C13H8BrClN2O

  • Weili Li ORCID logo EMAIL logo and Bo Yang
Published/Copyright: February 11, 2021

Abstract

C13H8BrClN2O, (M = 323.57 g/mol), monoclinic, P21/c (no. 14), a = 11.7584(5) Å, b = 7.4336(3) Å, c = 14.1134(6) Å, β = 104.861(2)°, V = 1192.35(9) Å3, Z = 4, Rgt(F) = 0.0301, wRref(F2) = 0.0794, T = 150.0 K.

CCDC no: 2052841

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size0.20 × 0.16 × 0.12 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:3.66 mm−1
Diffractometer, scan mode:Bruker D8/APEX2, ω
θmax, completeness:26.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:12,189, 2447, 0.059
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2001
N(param)refined:164
Programs:CrysAlisPRO [1], SHELX [2], [, 3], Diamond [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Br10.20010 (3)0.01099 (4)0.802903 (19)0.04137 (11)
Cl10.37660 (6)−0.12755 (11)0.48547 (6)0.04886 (19)
O1−0.01818 (16)−0.1434 (3)0.66908 (14)0.0414 (4)
H1−0.0785−0.18980.63200.062*
N1−0.15012 (19)−0.2828 (3)0.51059 (16)0.0365 (5)
N2−0.08208 (19)−0.3468 (3)0.38078 (16)0.0345 (5)
H2−0.0324−0.35720.34390.041*
C10.0568 (2)−0.2082 (3)0.52815 (19)0.0331 (5)
C20.0699 (2)−0.1444 (3)0.62404 (19)0.0348 (6)
C30.1802 (2)−0.0775 (3)0.67424 (18)0.0342 (5)
C40.2745 (2)−0.0738 (3)0.6335 (2)0.0365 (6)
H40.3488−0.02960.66970.044*
C50.2588 (2)−0.1362 (4)0.5384 (2)0.0368 (6)
C60.1514 (2)−0.2015 (3)0.4858 (2)0.0350 (6)
H60.1419−0.24220.42040.042*
C7−0.0578 (2)−0.2795 (3)0.47372 (19)0.0336 (5)
C8−0.2002 (2)−0.3961 (3)0.35539 (19)0.0349 (6)
C9−0.2410 (2)−0.3552 (3)0.4375 (2)0.0361 (6)
C10−0.3593 (2)−0.3852 (4)0.4360 (2)0.0438 (7)
H10−0.3888−0.35660.49080.053*
C11−0.4307 (3)−0.4578 (4)0.3518 (2)0.0479 (7)
H11−0.5111−0.47990.34860.057*
C12−0.3876 (3)−0.4999 (4)0.2708 (2)0.0471 (7)
H12−0.4394−0.55110.21430.057*
C13−0.2718 (3)−0.4693 (4)0.2706 (2)0.0425 (6)
H13−0.2429−0.49680.21540.051*

Source of material

3-Bromo-5-chlorosalicylaldehyde (0.224 g, 1 mmol) and 30 ml of anhydrous methanol were added in a wide-neck conical flask, monitored with a temperature probe and warmed up to 60 °C with stirring, then 1 mmol (0.108 g) of o-phenylenediamine was dropwisely added. Over 30 min the mixture gradually turned to light yellow, and refluxed for another 16 h. The obtained solution was then filtered and the filtrate was left to crystallise in an open vessel at room temperature. Colorless block crystals were isolated from the yellow mother liquor in the following 24 h.

Experimental details

The structure was solved with the Olex2 program [2] as an interface together with the SHELXT and SHELXL programs [3], [, 4]. All H atoms were placed in geometrically idealized positions and refined using a riding model, with O–H = 0.84 (phenolic hydroxyl), 0.95 Å (benzene), and with Uiso(H) = 1.2 Ueq(C) for H atoms on phenolic hydroxyl and aryl.

Comment

Benzimidazoles are a class of heterocyclic compounds which are of significant interest [5], [6], [7], [8]. Benzimidazoles species are also important intermediates in many organic synthesis and have a wide range of applications in synthetic chemistry. Therefore, the research on the synthesis and application of benzimidazoles have attracted significant attention in the past few decades [8], [, 12]. As a part of our current research interest in this work, we report a new hetero-halogenated benzimidazole compound.

X-ray diffraction analysis reveals that the title compound contains a planar benzimidazole molecule, as shown in the Figure. The central five non-hydrogen conjugated atoms [C(=O)C–C=N] constitute the chromophore. The dihedral angle between the benzimidazole and phenyl ring is 1.9°, indicating the co-planar nature of the whole molecule. In addition, the central chromophore and benzimidazole generates an intramolecular O–H⋯N hydrogen bond [O1–H1⋯N1: O1–H1 = 0.85(1) Å, H1⋯N1 = 1.893(4) Å, O1⋯N1 = 2.589(8) Å with angle at H1 = 147.84]. Bond lengths and angles are in the expected ranges [9], [10], [11].


Corresponding author: Weili Li, Department of Chemical Science and Technology, Kunming University, Yunnan, Kunming65200, P. R. China, E-mail:

Funding source: Yunnan Fundamental Research Projects

Award Identifier / Grant number: 2019FH001(-091

Award Identifier / Grant number: )

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Fund for Yunnan Fundamental Research Projects (Grant No. 2019FH001(-091)).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2020-12-31
Accepted: 2021-01-22
Published Online: 2021-02-11
Published in Print: 2021-05-26

© 2021 Weili Li and Bo Yang, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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