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Crystal structure of 5,17-diformyl-25,26,27,28-tetrahydroxycalix[4]arene- dichloromethane, C31H26Cl2O6

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Published/Copyright: July 18, 2020

Abstract

C30H24O6 ⋅ CH2Cl2, orthorhombic, Pbcn (no. 60), a = 11.6965(10) Å, b = 13.8078(11) Å, c = 16.3257(14) Å, V = 2636.6(4) Å3, Z = 4, Rgt(F) = 0.0765, wRref(F2) = 0.1487, T = 296(2) K.

CCDC no.: 2014885

The molecular structure of the title compound (systematic name: 12,32,52,72-tetrahydroxy-1,3,5,7(1,3)-tetrabenzenacyclooctaphane-15,55-dicarbaldehyde) is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.30 × 0.20 × 0.20 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.29 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:25.0°, >99%
N(hkl)measured, N(hkl)unique, Rint:16403, 2318, 0.107
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1801
N(param)refined:179
Programs:Olex2 [1], Bruker [2], SHELX [3], Diamond [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.6929(3)0.7721(2)0.1667(2)0.0173(8)
C20.6715(3)0.7394(2)0.0874(2)0.0162(8)
C30.7406(3)0.6677(2)0.0564(2)0.0160(8)
H30.72750.64460.00370.019*
C40.8297(3)0.6291(2)0.1022(2)0.0162(8)
C50.8487(3)0.6632(2)0.1805(2)0.0178(8)
H50.90810.63700.21120.021*
C60.7821(3)0.7348(2)0.2142(2)0.0176(8)
C70.8026(3)0.7664(3)0.3019(2)0.0202(8)
H7A0.87980.74890.31780.024*
H7B0.79590.83630.30530.024*
C80.7189(3)0.7205(2)0.3608(2)0.0182(8)
C90.6213(3)0.7701(2)0.38536(19)0.0152(8)
C100.5400(3)0.7284(2)0.4363(2)0.0181(8)
C110.4293(3)0.7773(2)0.4606(2)0.0186(8)
H11A0.41580.76690.51860.022*
H11B0.43620.84650.45160.022*
C120.5619(3)0.6350(3)0.4641(2)0.0262(9)
H120.50960.60540.49890.031*
C130.6585(4)0.5856(3)0.4416(3)0.0317(10)
H130.67160.52350.46170.038*
C140.7358(3)0.6276(3)0.3895(2)0.0246(9)
H140.80020.59310.37320.030*
C150.8994(3)0.5522(2)0.0691(2)0.0201(8)
H150.87950.52760.01810.024*
C161.00000.0514(4)0.25000.0442(18)
H16Ba1.04600.09280.21510.053*
H16Aa0.95400.09280.28490.053*
Cl10.91029(13)−0.01909(11)0.18934(9)0.0732(5)
O10.6219(2)0.84201(18)0.19386(15)0.0245(6)
H10.63210.85040.24300.037*
O20.6147(2)0.86413(15)0.35835(15)0.0190(6)
H20.55250.88700.37110.029*
O30.9820(2)0.51743(17)0.10308(16)0.0269(6)
  1. aOccupancy: 0.5.

Source of material

To a solution of calix[4]arene (1.0 g, 2.3 mmol) in chloroform (35 mL) cooled at −10 °C were added 1,1-dichlorodimethylether (2.7 g, 23.4 mmol) and TiCl4 (4.4 g, 23.4 mmol). The reaction mixture was stirred at −10 °C for 30 min and then treated with water (100 mL). The organic layer was separated, washed three times with water, and dried over Na2SO4, and the solvent was removed under reduced pressure. The desired product was purified by silica gel column chromatography (hexane/CHCl2 1:1). Single crystals were obtained from acetone by slow evaporation at room temperature.

Experimental details

Using Olex2 [1], the structure was solved using Charge Flipping and refined with the ShelXL [3] refinement. All hydrogen atoms were positioned geometrically, with the d(C—H) = 0.97—0.99 Å, Uiso(H) = 1.2 times Ueq(C) and Uiso(H) = 1.5 times Ueq(O).

Comment

Within the macrocyclic compounds family, calixarenes are certainly amongst the most popular members, due to their fascinating chemical and physical properties [5], [6]. Calixarenes can be readily modified at the phenolic hydroxyl groups (lower rim) as well as at the positions para to the HO-groups (upper rim). Calix[4]arene, the smaller member of the family, have proven to be superb molecular scaffolds for the assembly of receptors for neutral and charged guests [7], as well as of molecular capsules. The selective introduction of formyl groups used to attach various further can be functional groups. The formylation of calix[4]arene by TiCl4/Cl2CHOCH3 could afford the 1,3-diformyl derivative.

The bond length and bond angle of the target compound are within the normal range. The crystal structure shows that aldehyde groups are generated at the 1 and 3 positions of the calix[4]arene, and the crystal structure of 1,3-diformyl derivative exhibited as cone conformation. There is intramolecular hydrogen bond formation between the hydroxy groups (O1—H1⋯O2). In addition, the crystal structure expanded into a two-dimensional structure through non-classical C15—H15⋯O3, O2—H2⋯O1 and O2—H2⋯O3 intermolecular hydrogen bonds.

Acknowledgements

This work was supported by the Science and Technology Foundation of Guizhou Province (grant number 2019[1032], 2020[1Y373]).

References

1. Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: Olex2: a complete structure solution, refinement and analysis program. J. Appl. Cryst. 42 (2009) 339–341.10.1107/S0021889808042726Search in Google Scholar

2. Bruker. APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, WI, USA (2012).Search in Google Scholar

3. Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central

4. Brandenburg, K.: DIAMOND. Visual Crystal Structure Information System. Ver. 4.0. Crystal Impact, Bonn, Germany (2015).Search in Google Scholar

5. Kumar, R.; Sharma, A.; Singh, H.; Suating, P.; Kim, H. S.; Sunwoo, K.; Shim, I.; Gibb, B. C.; Kim, J. S.: Revisiting fluorescent calixarenes: from molecular sensors to smartmaterials. Chem. Rev. 119 (2019) 9657–9721.10.1021/acs.chemrev.8b00605Search in Google Scholar PubMed

6. Dondoni, A.; Marra, A.: Calixarene and calixresorcarene glycosides: their synthesis andbiological applications. Chem. Rev. 110 (2010) 4949–4977.10.1021/cr100027bSearch in Google Scholar PubMed

7. Joseph, R.; Rao, C. P.: Ion and molecular recognition by lower rim 1,3-di-conjugates ofcalix[4]arene as receptors. Chem. Rev. 111 (2011) 4658–4702.10.1021/cr1004524Search in Google Scholar PubMed

Received: 2020-06-24
Accepted: 2020-07-08
Published Online: 2020-07-18
Published in Print: 2020-10-27

©2020 Chong Wu et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  72. Crystal structure of 4-[(3-methoxyphenyl)carbamoyl]butanoic acid, C12H15NO4
  73. Crystal structure of dichlorido-bis(tri-4-tolylphosphane oxide-κO)-di(4-chlorophenyl-κC)tin(IV), C54H50Cl4O2P2Sn
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  76. Crystal structure of (E)-dichloro(1-chloro-3-methoxyprop-1-en-2-yl)(4-methoxyphenyl)-λ4-tellane, C11H13Cl3O2Te
  77. Crystal structure of bis{N-methyl-N′-[3-(4-methoxyphenyl)-1-methylpropane-1-ylidene]carbamohydrazonothioato}zinc(II), C26H36N6O2S2Zn
  78. Crystal structure of (2-carboxy-4-(3-carboxy-5-carboxylatophenoxy)benzoato-κ2O,O′)bis(1,10-phenantroline-κ2N,N′)cobalt(II), C40H24N4O9Co
  79. The crystal structure of (3S,8R,10R,14R)-17-((2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyltetrahydrofuran-2-yl)-4,4,8,10,14-pentamethyl-12-oxohexadecahydro-1H-cyclopenta[a]phenanthren-3-yl acetate, C32H52O5
  80. Crystal structure of (μ2-1,1′-bis(diphenylphosphino)ferrocene-κ2P,P′)-bis[(Z)N-(3-fluorophenyl)-O-methylthiocarbamato-S]digold(I) chloroform solvate, C50H42Au2F2FeN2O2P2S2, CHCl3
  81. Crystal structure of poly[bis(μ2-1,4-di(1H-imidazol-1-yl)benzene-κ2N:N′)-(μ2-tetraoxidomolybdato(VI)-κ2O:O′)cobalt(II)], C24H20N8O4MoCo
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