Home Crystal structure of catena{(μ2-1,10-phenanthroline-κ4N,N,N′,N′)-(μ2-1,10-phenanthroline-κ3N,N,N′)potassium(I) {[bis(2-hydroxyethyl)iminiumyl](sulfanidyl)methyl}sulfanide hemi(1,10-phenanthroline)}, {C24H16KN4, 0.5(C12H8N2), C5H10NO2S2}
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Crystal structure of catena{(μ2-1,10-phenanthroline-κ4N,N,N′,N′)-(μ2-1,10-phenanthroline-κ3N,N,N′)potassium(I) {[bis(2-hydroxyethyl)iminiumyl](sulfanidyl)methyl}sulfanide hemi(1,10-phenanthroline)}, {C24H16KN4, 0.5(C12H8N2), C5H10NO2S2}

  • Kong Mun Lo , See Mun Lee and Edward R.T. Tiekink ORCID logo EMAIL logo
Published/Copyright: August 1, 2020

Abstract

C35H30KN6O2S2, monoclinic, C2/c (no. 15), a = 32.8001(4) Å, b = 7.1562(1) Å, c = 26.0400(3) Å, β = 94.385(1)°, V = 6094.32(13) Å3, Z = 8, Rgt(F) = 0.0315, wRref(F2) = 0.0911, T = 100(2) K.

CCDC no.: 2017020

The molecular structures are shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless prism
Size:0.13 × 0.10 × 0.04 mm
Wavelength:Cu Kα radiation (1.54184 Å)
μ:3.17 mm−1
Diffractometer, scan mode:XtaLAB Synergy, ω
θmax, completeness:67.1°, >99%
N(hkl)measured, N(hkl)unique, Rint:68443, 5436, 0.027
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 5312
N(param)refined:421
Programs:CrysAlisPRO [1], SHELX [2], [3], WinGX/ORTEP [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
K10.24739(2)0.76681(6)0.23559(2)0.01307(11)
S10.42721(2)0.79102(7)0.47775(2)0.02119(13)
S20.34084(2)0.67345(7)0.44974(2)0.01543(12)
O10.46034(5)0.5084(2)0.56831(6)0.0249(3)
H1O0.4555(9)0.600(3)0.5486(9)0.037*
O20.33745(4)0.0814(2)0.40190(6)0.0219(3)
H2O0.3440(8)−0.018(2)0.4173(9)0.033*
N10.40170(5)0.4369(2)0.47346(6)0.0130(3)
C10.39106(6)0.6185(3)0.46721(7)0.0141(4)
C20.44452(6)0.3738(3)0.48204(7)0.0158(4)
H2A0.4625670.4685020.4678320.019*
H2B0.4478050.2558760.4629070.019*
C30.45809(6)0.3421(3)0.53821(8)0.0188(4)
H3A0.4387630.2546700.5530290.023*
H3B0.4853450.2819480.5405250.023*
C40.37211(6)0.2836(3)0.46627(7)0.0141(4)
H4A0.3448180.3278750.4746920.017*
H4B0.3803700.1800660.4900560.017*
C50.36966(6)0.2123(3)0.41091(7)0.0168(4)
H5A0.3651440.3190090.3869610.020*
H5B0.3959100.1525530.4040220.020*
N20.50532(5)0.1491(2)0.69801(6)0.0150(3)
C60.51018(6)0.1454(3)0.64784(8)0.0180(4)
H60.5121140.2613910.6304580.022*
C70.51264(6)−0.0195(3)0.61884(7)0.0194(4)
H70.516025−0.0140360.5829620.023*
C80.51006(6)−0.1875(3)0.64326(8)0.0170(4)
H80.511446−0.3009140.6245090.020*
C90.50532(5)−0.1907(3)0.69672(7)0.0130(4)
C100.50252(6)−0.3631(3)0.72436(8)0.0151(4)
H100.504203−0.4784510.7065940.018*
C110.50272(5)−0.0175(3)0.72246(7)0.0120(4)
N30.26891(5)0.9293(2)0.14466(6)0.0136(3)
N40.31818(5)1.0166(2)0.23208(6)0.0129(3)
C120.24521(6)0.8937(3)0.10232(7)0.0155(4)
H120.2181370.8513590.1060070.019*
C130.25778(6)0.9149(3)0.05220(7)0.0171(4)
H130.2392830.8920920.0229990.020*
C140.29719(6)0.9690(3)0.04629(7)0.0164(4)
H140.3066400.9808930.0128560.020*
C150.32366(6)1.0069(3)0.09044(7)0.0137(4)
C160.36502(6)1.0677(3)0.08658(7)0.0157(4)
H160.3754651.0791260.0536900.019*
C170.38925(6)1.1090(3)0.12955(8)0.0159(4)
H170.4166071.1484620.1264660.019*
C180.37417(6)1.0939(3)0.17964(7)0.0136(4)
C190.39851(6)1.1421(3)0.22464(8)0.0157(4)
H190.4255661.1869860.2223630.019*
C200.38287(6)1.1237(3)0.27171(8)0.0170(4)
H200.3989741.1534800.3024990.020*
C210.34261(6)1.0600(3)0.27339(7)0.0150(4)
H210.3321051.0470550.3062070.018*
C220.33386(6)1.0330(2)0.18511(7)0.0115(4)
C230.30788(6)0.9878(3)0.13905(7)0.0120(4)
N50.22844(5)0.9509(2)0.32469(6)0.0126(3)
N60.18191(5)1.0397(2)0.23553(6)0.0138(3)
C240.25027(6)0.9062(3)0.36800(7)0.0154(4)
H240.2779860.8706700.3658330.018*
C250.23483(6)0.9085(3)0.41668(7)0.0191(4)
H250.2516930.8750560.4465600.023*
C260.19502(7)0.9597(3)0.42030(8)0.0198(4)
H260.1838500.9617940.4529000.024*
C270.17062(6)1.0093(3)0.37552(8)0.0169(4)
C280.12854(6)1.0623(3)0.37680(8)0.0213(4)
H280.1165731.0666550.4088640.026*
C290.10569(6)1.1061(3)0.33317(9)0.0217(4)
H290.0778991.1410470.3349870.026*
C300.12274(6)1.1005(3)0.28405(8)0.0171(4)
C310.09965(6)1.1444(3)0.23768(9)0.0219(4)
H310.0717851.1801030.2380810.026*
C320.11782(7)1.1350(3)0.19199(9)0.0226(5)
H320.1027021.1632730.1603690.027*
C330.15903(6)1.0830(3)0.19276(8)0.0180(4)
H330.1713621.0782980.1609410.022*
C340.16408(6)1.0480(3)0.28096(7)0.0132(4)
C350.18864(6)1.0015(3)0.32802(7)0.0123(4)

Source of material

Diethanolamine (Merck, 0.29 mL, 3 mmol) was slowly added dropwise into a solution of carbon disulfide (Merck, 0.18 mL, 3 mmol) and potassium hydroxide (Merck, 0.17 g, 3 mmol) in methanol (5 mL) at 0 °C. Then, the mixture was stirred for 2 h. Next, europium(III) nitrate pentahydrate (Sigma-Aldrich, 0.43 g, 1 mmol) and 1,10-phenanthroline (Merck, 0.18 g, 1 mmol) in water (5 mL) was added to the mixture followed by stirring for 4 h. Upon standing at room temperature for 3 days, the white precipitate formed was filtered and dried in air. It was recrystallised from methanol/DMSO (1:1). The title compound was a side-product obtained from the reaction. Yield: 0.15 g (7.5%). M.pt (Stuart SMP30 digital melting point apparatus): >573 K. IR (Bruker Vertex 70v FTIR Spectrophotometer; cm−1): 3361 (b) ν(OH), 1540(m) ν(CN), 1504(m) ν(CC), 1410(m) ν(CO), 1077 (m) ν(CS). 1H NMR (Bruker Ascend 400 MHz NMR spectrometer, chemical shifts relative to Me4Si, DMSO-d6 solution, p.p.m.): 2.81–2.99 (m, 4H, NCH2), 4.40–4.51 (m, 4H, OCH2), 7.74–8.10, 8.45–8.58, 9.01–9.12 (m, 24H, Ar-H). 13C{1H} NMR (as for 1H NMR): 52.9, (NCH2), 60.3 (OCH2), 123.8, 127.2, 128.9, 136.8, 145.9, 150.5 (Ar-C), 197.6 (CS).

Experimental details

The C-bound H atoms were geometrically placed (C—H = 0.95–0.99 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The O-bound H atoms were refined with O—H = 0.84 ± 0.01 Å, and with Uiso(H) = 1.5Ueq(O). Owing to poor agreement, five reflections, i.e. (−13 1 16), (−22 2 2), (1 3 14), (−13 5 15) and (−22 0 2), were removed from the final cycles of refinement.

Comment

The crystal and molecular structures described herein of the title salt co-crystal, [K(phen)2][S2CN(CH2CH2OH)2](phen)0.5, (I), represents a rare report of an alkali metal salt of phen and a dithiocarbamate anion; phen is 1,10-phenanthroline. Indeed, the sole example of a crystallographically determined structure related to (I) is that of Na(phen)2(S2CNEt2) whereby the Na+ cation is chelated by two phen molecules as well as by the dithiocarbamate anion [5]. In continuation of investigations into the structures of alkali metal salts of dithiocarbamate anions [6], [7], [8], herein details for (I) described.

Referring to the figure (70% displacement ellipsoids), the crystallographic asymmetric unit of (I) comprises a dithiocarbamate anion, half a phen molecule (disposed about a 2-fold axis of symmetry with unlabelled atoms related by the symmetry operation 1 − x, y, 3/2 − z) and a K[(phen)2]+ cation; the later represents the repeat unit of a coordination polymer, as discussed below.

The dithiocarbamate anion exhibits the expected features with experimentally equivalent C—S bond lengths [C1—S1 = 1.719(2) Å and C1—S2 = 1.7205(19) Å] and a short C—N bond [C1—N1 = 1.353(3) Å], the latter being consistent with a significant contribution of the (2−)S2C=N(+) canonical form to the electronic structure of the anion. An intramolecular hydroxyl-O—H⋯S hydrogen bond is noted [O1—H1o⋯S1: H1o⋯S1 = 2.42(2) Å, O1⋯S1 = 3.2312(16) Å with angle at H1o = 162(2)°]. As mentioned above, there is a 2-fold symmetric phen molecule in the crystal. Finally, the third component of the asymmetric unit, i.e. a K[(phen)2]+ cation, assembles into a helical chain (21 symmetry) along the b-axis, as shown in the right-hand view of the figure. Within the asymmetric unit, the K1⋯N3–N6 bond lengths are 2.7773(16), 2.9373(16), 2.7795(16) and 2.9025(16) Å, respectively. The repeat units are connected by three additional K1⋯N4i–N6i contacts, i.e. 2.9692(16), 2.8973(16) and 2.8843(16) Å, respectively; symmetry operation (i) 1/2 − x, −1/2 + y, 1/2 − z. The N7 donor set about the K1 ion is, to a first approximation, based on a cube with one position vacant. The K1⋯N3i separation is 4.0123(16) Å, a separation which correlates with the K1—N3 contact being the shortest of all K⋯N contacts.

Globally, the molecular packing of (I) comprises columns of cations, parallel to the b-axis assembled into rows in the ab-plane with the neutral phen molecules between neighbouring columns. The connections between the chains are of the type chain-phen-C—H⋯π(phen) [shortest contact C19—H19⋯Cg(C9ii—C11ii,C9iii—C11iii) = 2.49 Å with angle at H19 = 152° for (ii) 1 − x, 1 − y, 1 − z and (iii) x, 1 − y, −1/2 + z] so that supramolecular layers are formed. Interspersed between layers are the dithiocarbamate anions which form hydroxyl-O—H⋯S(dithiocarbamate) hydrogen bonds [O2—H2o⋯S2iv: H2o⋯S2iv = 2.369(16) Å, O2⋯S2iv = 3.1727(15) Å with angle at H2o = 161(2)° for (iv) x, −1 + y, z] which serve to connect anions along the b-axis. The dithiocarbamate anions also link phen molecules, coordinated and non-coordinated, via phen-C—H⋯O(hydroxyl) [shortest contact: C21—H21⋯O2v: H21⋯O2v = 2.50 Å, C21⋯O2v = 3.367(2) Å with angle at H21 = 152° for (v) x, 1 + y, z] and phen-C—H⋯S(dithiocarbamate) [C16—H16⋯S1vi: H16⋯S1vi = 2.86 Å, C16⋯S1vi = 3.755(2) Å with angle at H16 = 158° for (vi) x, 2 − y, −1/2 + z] contacts to consolidate the three-dimensional architecture.

Acknowledgements

Sunway University Sdn Bhd is thanked for financial support of this work through Grant No. STR-RCTR-RCCM-001-2019.

References

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Received: 2020-07-06
Accepted: 2020-07-17
Published Online: 2020-08-01
Published in Print: 2020-10-27

©2020 Kong Mun Lo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  44. The crystal structure of aqua{N,N,N′,N′-tetrakis[(1H-benzimidazol-κN3) methyl]cyclohexane-1,2-diamine}lead(II) diacetate–methanol (1/2), C44H54N10O7Pb
  45. Crystal structure of (2-amino-5-bromo-3-iodophenyl)(3-(4-chlorophenyl)oxiran-2-yl)methanone, C15H10BrClINO2
  46. Synthesis and crystal structure of 3-octyl-5,5-diphenylimidazolidine-2,4-dione, C23H28N2O2
  47. Synthesis and crystal structure of 2-azido-N-(4-nitrophenyl)acetamide, C8H7N5O3
  48. Crystal structure of tert-butyl (1S,2R,5R)-2-(hydroxymethyl)-4-(4-methoxyphenyl)-6-oxa-3-azabicyclo[3.1.0]hexane-3-carboxylate, C17H23NO5
  49. Crystal structure of 4-[(4-methoxy-2-nitrophenyl)carbamoyl]butanoic acid, C12H14N2O6
  50. Crystal structure of 3-ethyl-1-[(E)-[(2E)-3-phenylprop-2-en-1-ylidene]amino]thiourea, C12H15N3S
  51. Crystal structure of 4,4′-bipyridin-1,1′-dium poly[bis(μ4-benzene-1,3,5-triyltris(hydrogen phosphonato-κ4O:O′:O′′:O′′′))zinc(II)], C11H11NO9P3Zn
  52. Crystal structure of (μ2-1,1′-bis(diphenylphosphino)butane-κ2P,P′)-bis[(Z)-N-(3-fluorophenyl)-O-methylthiocarbamato-κS]-di-gold(I), C44H42Au2F2N2O2P2S2
  53. Crystal structure of (μ2-1,1′-bis(diphenylphosphino)hexane-κ2P,P′)-bis[(Z)-N-(3-fluorophenyl)-O-methylthiocarbamato-κS]digold(I), C46H46Au2F2N2O2P2S2
  54. Crystal structure of tetrakis (N-(2-hydroxyethyl)-N-isopropylcarbamodithioato-κS,S′)-(μ2(2-(pyridin-4-yl)vinyl)pyridine-κN,N′)dicadmium(II), C36H58Cd2N6O4S8
  55. Crystal structure of 4-(2-(benzo[b]thiophen-2-yl)-3,3,4,4,5,5-hexafluorocyclopent-1-en-1-yl)-1,5-dimethyl-1H-pyrrole-2-carbonitrile, C20H12F6N2S
  56. Crystal structure of bis(octahydrocyclopenta[c]pyrrolium)pentachlorobismuthate(III), (C7NH14)2BiCl5
  57. The crystal structure of diaqua-tris(nitrato-κ2O,O′)-bis(4,4,5,5-tetramethyl-2-(p-pyridyl)imidazoline-1-oxyl 3-oxide-κN)samarium(III), C24H36N9O15Sm
  58. Synthesis and crystal structure of methyl 2-(2-((tert-butoxycarbonyl)amino)phenyl)-2-(4-oxo-4H-chromen-3-yl)acetate, C23H23NO6
  59. Crystal structure of O-hexyl benzoylcarbamothioate, C14H19NO2S
  60. Crystal structure of chlorido-(O-methyl phenylcarbamothioamide-κS)-bis(triphenylphosphane-κP)silver(I), C44H39AgClNOP2S
  61. Crystal structure of chlorido-(O-ethyl phenylcarbamothioamide-κS)-bis(triphenylphosphane-κP)-silver(I), C45H41AgClNOP2S
  62. Crystal structure of 4-[(2-methoxyphenyl)carbamoyl]butanoic acid, C12H15NO4
  63. Crystal structure of ethyl 4-methyl-2-oxo-5-phenyl-1,3,4-oxadiazinane-3-carboxylate, C13H16N2O4
  64. Crystal structure of catena-poly[diaqua(μ2-2-(hydroxymethyl)-1H-imidazole-4,5-dicarboxylato)cadmium(II)], C6H8CdN2O7
  65. Crystal structure of (1S)-N-(chloromethyl)-1-((4S,6aR,8aS, 8bR,9aR)-4-methoxy-6a,8a-dimethyl-1,3,4, 5,6,6a,6b,7,8,8a,9a,10,10a,10b-tetradecahydro-8bH-naphtho[2′,1′:4,5] indeno[1,2-b]oxiren-8b-yl)-N-methylethan-1-amine, C24H46ClNO5
  66. Crystal structure of 4-[(3,5-dichlorophenyl)carbamoyl]butanoic acid, C11H11Cl2NO3
  67. Crystal structure of (2Z)-2-amino-3-[(E)-[(2,4-dihydroxyphenyl)methylidene]-amino]but-2-enedinitrile, C11H8N4O2
  68. Crystal structure of 3-methyl-1-[(E)-(4-phenylbutan-2-ylidene)amino]thiourea, C12H17N3S
  69. Crystal structure of carbonyl{hydridotris[3-phenyl-5-methylpyrazol-1-yl]borato-κ3N,N′N′′}copper(I), C31H28BCuN6O
  70. Crystal structure of ethane-1,2-diylbis(diphenylphosphine oxide) – dihydrogenperoxide (1/2), C26H28O6P2
  71. Crystal structure of 2-(pyridin-2-ylamino)pyridinium chloride dibenzyldichlorostannane, [C10H10N3]Cl, C14H14Cl2Sn
  72. Crystal structure of 4-[(3-methoxyphenyl)carbamoyl]butanoic acid, C12H15NO4
  73. Crystal structure of dichlorido-bis(tri-4-tolylphosphane oxide-κO)-di(4-chlorophenyl-κC)tin(IV), C54H50Cl4O2P2Sn
  74. Crystal structure of dichloridodimethylbis(tri-4-tolylphosphane oxide-κO)-tin(IV), C44H48Cl2O2P2Sn
  75. Crystal structure of chlorido(2-methylquinolin-8-olato-κ2N,O)-bis(4-tolyl-κC)tin(IV), C24H22ClNOSn
  76. Crystal structure of (E)-dichloro(1-chloro-3-methoxyprop-1-en-2-yl)(4-methoxyphenyl)-λ4-tellane, C11H13Cl3O2Te
  77. Crystal structure of bis{N-methyl-N′-[3-(4-methoxyphenyl)-1-methylpropane-1-ylidene]carbamohydrazonothioato}zinc(II), C26H36N6O2S2Zn
  78. Crystal structure of (2-carboxy-4-(3-carboxy-5-carboxylatophenoxy)benzoato-κ2O,O′)bis(1,10-phenantroline-κ2N,N′)cobalt(II), C40H24N4O9Co
  79. The crystal structure of (3S,8R,10R,14R)-17-((2S,5S)-5-(2-hydroxypropan-2-yl)-2-methyltetrahydrofuran-2-yl)-4,4,8,10,14-pentamethyl-12-oxohexadecahydro-1H-cyclopenta[a]phenanthren-3-yl acetate, C32H52O5
  80. Crystal structure of (μ2-1,1′-bis(diphenylphosphino)ferrocene-κ2P,P′)-bis[(Z)N-(3-fluorophenyl)-O-methylthiocarbamato-S]digold(I) chloroform solvate, C50H42Au2F2FeN2O2P2S2, CHCl3
  81. Crystal structure of poly[bis(μ2-1,4-di(1H-imidazol-1-yl)benzene-κ2N:N′)-(μ2-tetraoxidomolybdato(VI)-κ2O:O′)cobalt(II)], C24H20N8O4MoCo
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