Home Crystal structure of methyl 4-{[4-(4-cyanobenzamido)phenyl]amino}benzofuro[2,3-d]pyrimidine-6-carboxylate, C26H17N5O4
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Crystal structure of methyl 4-{[4-(4-cyanobenzamido)phenyl]amino}benzofuro[2,3-d]pyrimidine-6-carboxylate, C26H17N5O4

  • Pei-Xuan Li ORCID logo EMAIL logo , Wei Hui and Qin-Qin Jing
Published/Copyright: February 24, 2022

Abstract

C46H38N10S2, triclinic, P 1 (no. 2), a = 8.9297(12) Å, b = 10.9926(15) Å, c = 12.6758(18) Å, α = 104.532(2)°, β = 96.312(2)°, γ = 112.398(2)° V = 1083.8(3) Å3, Z = 2, R gt (F) = 0.0398, wR ref (F2) = 0.1195, T = 296(2) K.

CCDC no.: 1906988

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.26 × 0.23 × 0.20 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.10 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θmax, completeness: 25.0°, >99%
N(hkl)measured, N(hkl)unique, Rint: 7604, 3800, 0.021
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 2865
N(param)refined: 317
Programs: CrysAlisPRO [1], SHELX [2, 3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
C1 0.2075 (3) 0.9636 (2) 0.48804 (17) 0.0437 (5)
C2 0.2247 (3) 0.85162 (19) 0.52004 (16) 0.0384 (5)
C3 0.1096 (3) 0.7784 (2) 0.57219 (16) 0.0409 (5)
H3 0.0218 0.8009 0.5863 0.049*
C4 0.1272 (2) 0.6717 (2) 0.60290 (16) 0.0399 (5)
H4 0.0517 0.6233 0.6391 0.048*
C5 0.2565 (2) 0.63591 (19) 0.58034 (15) 0.0338 (4)
C6 0.3689 (2) 0.7075 (2) 0.52555 (16) 0.0398 (5)
H6 0.4535 0.6820 0.5081 0.048*
C7 0.3545 (3) 0.8161 (2) 0.49726 (16) 0.0421 (5)
H7 0.4317 0.8659 0.4628 0.050*
C8 0.2721 (2) 0.5168 (2) 0.60996 (16) 0.0352 (4)
C9 0.2368 (2) 0.41242 (18) 0.76391 (15) 0.0306 (4)
C10 0.2532 (3) 0.4488 (2) 0.87935 (16) 0.0390 (5)
H10 0.2806 0.5402 0.9207 0.047*
C11 0.2291 (3) 0.35066 (19) 0.93276 (16) 0.0386 (5)
H11 0.2416 0.3764 1.0100 0.046*
C12 0.1865 (2) 0.21431 (18) 0.87256 (15) 0.0299 (4)
C13 0.1700 (2) 0.17780 (18) 0.75761 (15) 0.0308 (4)
H13 0.1401 0.0858 0.7165 0.037*
C14 0.1974 (2) 0.27580 (18) 0.70327 (15) 0.0309 (4)
H14 0.1894 0.2505 0.6264 0.037*
C15 0.2079 (2) 0.01272 (18) 0.91373 (14) 0.0285 (4)
C16 0.1607 (2) −0.20249 (19) 0.93002 (15) 0.0363 (5)
H16 0.0955 −0.2762 0.9522 0.044*
C17 0.3759 (2) −0.10197 (19) 0.86383 (14) 0.0312 (4)
C18 0.3500 (2) 0.01644 (18) 0.87303 (14) 0.0273 (4)
C19 0.4905 (2) 0.10971 (18) 0.83988 (14) 0.0289 (4)
C20 0.5858 (2) 0.03535 (19) 0.81361 (15) 0.0338 (4)
C21 0.7340 (2) 0.0853 (2) 0.78159 (17) 0.0419 (5)
H21 0.7941 0.0326 0.7659 0.050*
C22 0.7884 (2) 0.2173 (2) 0.77403 (16) 0.0419 (5)
H22 0.8884 0.2553 0.7532 0.050*
C23 0.6967 (2) 0.2958 (2) 0.79697 (15) 0.0352 (5)
C24 0.5483 (2) 0.24295 (19) 0.83136 (14) 0.0310 (4)
H24 0.4889 0.2960 0.8483 0.037*
C25 0.7596 (2) 0.4320 (2) 0.77734 (16) 0.0407 (5)
C26 0.6936 (3) 0.6120 (2) 0.7482 (2) 0.0580 (6)
H26A 0.8013 0.6784 0.7937 0.087*
H26B 0.6130 0.6483 0.7622 0.087*
H26C 0.6971 0.5940 0.6706 0.087*
N1 0.1922 (3) 1.0516 (2) 0.46162 (16) 0.0588 (5)
N2 0.2515 (2) 0.51604 (15) 0.71448 (13) 0.0361 (4)
H2 0.2468 0.5890 0.7560 0.043*
N3 0.15244 (19) 0.11254 (15) 0.92789 (13) 0.0363 (4)
H3A 0.0904 0.1148 0.9750 0.044*
N4 0.11724 (18) −0.09785 (15) 0.94456 (13) 0.0326 (4)
N5 0.2863 (2) −0.21529 (16) 0.88753 (13) 0.0361 (4)
O1 0.30078 (19) 0.42996 (15) 0.54474 (12) 0.0510 (4)
O2 0.51634 (16) −0.09451 (13) 0.82680 (11) 0.0377 (3)
O3 0.89676 (19) 0.49024 (17) 0.76328 (16) 0.0688 (5)
O4 0.64762 (17) 0.48432 (14) 0.77534 (12) 0.0472 (4)

Source of material

The methyl 4-[(4-aminophenyl)amino]benzofuro[2,3-d] pyrimidine-6-carboxylate 7 (2.0 g, 6.0 mmol), 4-cyanobenzoic acid (1.15 g, 7.8 mmol), HATU (systematic name : 1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxide hexafluorophosphate; 2.96 g, 7.8 mmol) and Et3N (1.2 g, 12.0 mmol) were stirred together in dimethylformamide (15 mL) at room temperature for 7 h. Upon completion of the reaction, the mixture was diluted with saturated sodium carbonate solution (50 mL) and subsequently extracted with dichloromethane. The extracts were combined, washed with brine, dried over anhydrous Na2SO4, and concentrated in vacuo. Purification by silica-gel column chromatography provided 2.13 g the desired product. After slowly evaporating the solvents for several days, some light yellow single crystals were obtained.

Experimental details

The structure was solved by direct methods and refined with the SHELX crystallographic software package [1]. The hydrogen atoms were placed at calculated positions and refined as riding atoms.

Comment

Cancer is one of the most health problems in the world; although many classes of drugs were used for the treatment, the needs for safe and effective anticancer compounds are still significant target. Heterocyclic building blocks represent useful scaffolds for applications in medicinal chemistry. To our knowledge, 4-anilinopyrimidine derivatives often have a wide range of biological activities, especially in antitumor drugs [4, 5]. Some of them have been developed as the important prescription antitumor drugs in the market, for example, Pazopanib [6], Ceritinib [7], Brigatinib [8], afatinib [9] and rociletinib [10] are all based on 4-anilinopyrimidine.

The title molecule (see the Figure) has a benzofuro[2,3-d]pyrimidine skeleton, in which all bond lengths and bond angles fall in normal ranges [11]. The dihedral angles between benzofuro[2,3-d]pyrimidine and two phenyl rings are 62.46° and 20.25° respectively. And the two phenyl planes are not coplanar with a dihedral angle of 64.08°. Furthermore, a mass of the intermolecular hydrogen bonds N(3)–H(3A) ⃛ N(4), N(3)–H(3A) ⃛ N(4), C(14)–H(14) ⃛ N(1), C(4)–H(4) ⃛ O(3) and C(11)–H(11) ⃛ O(4) are found in the title structure. It is worth noting that the crystal packing is further stabilized by weak p-p interactions (3.5142 Å). These interactions together with intermolecular hydrogen bond result in the formation of a three-dimensional framework.


Corresponding author: Pei-Xuan Li, College of Safety Science and Engineering, Xi’an University of Science and Technology, Xi’an 710054, China, E-mail:

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: None declared.

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2022-01-13
Accepted: 2022-02-07
Published Online: 2022-02-24
Published in Print: 2022-04-26

© 2022 Pei-Xuan Li et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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