Home Crystal structure of 2-((4-phenyl-5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl)thio)acetonitrile, C15H11N5S
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Crystal structure of 2-((4-phenyl-5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl)thio)acetonitrile, C15H11N5S

  • Guo-Xiang Sun ORCID logo EMAIL logo , Li-Jing Min , Liang Han and Xing-Hai Liu
Published/Copyright: January 4, 2022

Abstract

C15H11N5S, orthorhombic, Pbca (no. 61), a = 9.7864(2) Å, b = 15.5709(3) Å, c = 18.7774(4) Å, V = 2861.36(10) Å3, Z = 8, R gt (F) = 0.0485, wR ref (F2) = 0.1390, T = 296.15 K.

CCDC no.: 2129573

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless block
Size: 0.26 × 0.24 × 0.22 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.23 mm−1
Diffractometer, scan mode: Bruker P4, ω
θmax, completeness: 27.5°, >99%
N(hkl)measured, N(hkl)unique, Rint: 14,104, 3291, 0.064
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 1834
N(param)refined: 190
Programs: Bruker [1], Olex2 [2], SHELX [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
S1 0.54434 (7) 0.12148 (5) 0.40264 (3) 0.0688 (3)
N1 0.3033 (3) 0.1055 (3) 0.25373 (14) 0.1320 (13)
N2 0.32293 (19) 0.02297 (11) 0.43785 (10) 0.0515 (5)
N3 0.22525 (19) 0.02069 (11) 0.49174 (10) 0.0504 (5)
N4 0.37085 (17) 0.12470 (10) 0.51578 (9) 0.0429 (4)
N5 0.0041 (3) 0.12568 (15) 0.72022 (13) 0.0803 (7)
C1 0.3958 (3) 0.0839 (2) 0.28496 (15) 0.0885 (10)
C2 0.5152 (3) 0.0572 (2) 0.32430 (14) 0.0807 (9)
H2A 0.5946 0.0609 0.2935 0.097*
H2B 0.5044 −0.0024 0.3383 0.097*
C3 0.4067 (2) 0.08598 (14) 0.45343 (11) 0.0454 (5)
C4 0.2550 (2) 0.08174 (13) 0.53737 (11) 0.0430 (5)
C5 0.1721 (2) 0.09991 (13) 0.60097 (10) 0.0447 (5)
C6 0.0341 (2) 0.07890 (15) 0.59960 (12) 0.0530 (6)
H6 −0.0052 0.0562 0.5586 0.064*
C7 −0.0432 (3) 0.09219 (17) 0.65951 (14) 0.0681 (7)
H7 −0.1350 0.0768 0.6578 0.082*
C8 0.1367 (3) 0.14596 (19) 0.71986 (14) 0.0786 (8)
H8 0.1728 0.1701 0.7611 0.094*
C9 0.2244 (3) 0.13394 (15) 0.66338 (12) 0.0608 (7)
H9 0.3163 0.1483 0.6671 0.073*
C10 0.4384 (2) 0.19786 (13) 0.54776 (10) 0.0410 (5)
C11 0.3701 (2) 0.27510 (14) 0.55115 (12) 0.0520 (6)
H11 0.2827 0.2805 0.5322 0.062*
C12 0.4333 (3) 0.34446 (15) 0.58314 (13) 0.0591 (6)
H12 0.3879 0.3968 0.5864 0.071*
C13 0.5623 (3) 0.33623 (15) 0.60991 (12) 0.0559 (6)
H13 0.6039 0.3830 0.6319 0.067*
C14 0.6316 (2) 0.25930 (15) 0.60474 (12) 0.0546 (6)
H14 0.7205 0.2549 0.6219 0.066*
C15 0.5691 (2) 0.18888 (14) 0.57408 (11) 0.0467 (5)
H15 0.6144 0.1365 0.5712 0.056*

Source of material

A mixture of isonicotinohydrazide (1.37 g, 10 mmol) and isothiocyanatobenzene (1.35 g, 10 mmol) in ethanol (50 mL) was refluxed for 5 h. After cooling, the 2-isonicotinoyl-N-phenylhydrazine-1-carbothioamide were obtained from the solution of ethanol. Then the 2-isonicotinoyl-N-phenylhydrazine-1-carbothioamide was dissolved in NaOH solution (5 mL, 2 mol/L) and refluxed for 4 h. After cooling, a hydrochloric acid solution (4 mol/L) was added dropwise. A large amount of solid (4-phenyl-5-(pyridin-4-yl)-4H-1,2,4-triazole-3-thiol) was obtained. Finally, N,N-dimethylformamide (DMF) (5 mL), a mixture of 4-phenyl-5-(pyridin-4-yl)-4H-1,2,4-triazole-3-thiol (0.25 g, 1 mmol), 2-chloroacetonitrile (1.1 mmol) and NaOH (0.05 g, 1.2 mmol) was stirred overnight. The mixture was poured into ice (40 mL) and the product precipitated. The crude product was recrystallized from EtOH to give colorless crystals after three days [5].

Experimental details

Using Olex2 [2], the structure was solved with the ShelXS [3] structure solution program using Direct Methods and refined with the ShelXL [4] refinement package Uiso values of the hydrogen atoms were set to 1.2 Ueq of the parent atoms.

Comment

1,2,4-Triazole compounds are attractive because of their excellent biological activity [6], [7], [8]. A pyridinyl substituted 1,2,4-triazole possessed diversity biological activities, such as antimicrobial activity [9] and there are related compounds that show fungicidal activity [10].

There is One molecule in the asymmetric unit (see the Figure). The bond angles and bond lengths of the title compound (pyridine ring, 1,2,4-triazole ring and phenyl ring) are all in the normal ranges [1113]. The C–N bond length in the cyano group is 1.130(4) Å. The bond angle of C2–S1–C3 is 98.53(12)°, while the bond angle of N1–C1–C2 is 179.2(4)°. The torsion angle of the thioether group C1–C2–S1–C3 is 70.0(3)°. The plane of the triazole ring makes dihedral angles of 28.1° and 114.5° to the two other rings.


Corresponding author: Guo-Xiang Sun, School of Chemistry and Chemical Engineering, Yancheng Institute of Technology, Yancheng, 224051, Jiangsu, China, E-mail:

Award Identifier / Grant number: LY19C140002

Award Identifier / Grant number: LY19B020009

Funding source: Chemical Company for Research

Award Identifier / Grant number: KYY-HX-20210140

Award Identifier / Grant number: KYY-HX-20190720

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was funded by Zhejiang Provincial Natural Science Foundation of China (Nos. LY19C140002, LY19B020009), the Chemical Company for Research (KYY-HX-20210140, KYY-HX-20190720).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

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Received: 2021-11-05
Accepted: 2021-12-17
Published Online: 2022-01-04
Published in Print: 2022-04-26

© 2021 Guo-Xiang Sun et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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