Home Physical Sciences Crystal structure of (Z)-2-(2-(1,3-dioxo-1-(phenylamino)butan-2-ylidene)hydrazineyl) terephthalic acid-dimethylsulfoxide (1/1), C18H15N3O6 ⋅ C2H6OS
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Crystal structure of (Z)-2-(2-(1,3-dioxo-1-(phenylamino)butan-2-ylidene)hydrazineyl) terephthalic acid-dimethylsulfoxide (1/1), C18H15N3O6 ⋅ C2H6OS

  • Gunay Z. Mammadova , Iván Brito EMAIL logo and Alejandro Cárdenas
Published/Copyright: September 27, 2018

Abstract

C18H15N3O6 ⋅ C2H6OS, P21/c (no. 14), a = 15.762(9) Å, v = 6.013(4) Å, c = 22.264(11) Å, β = 103.522(19)°, V = 2052(2) Å3, Z = 4, Rgt(F) = 0.0484, wRref(F2) = 0.1348, T = 296(2) K.

CCDC no.: 1865971

The asymmeric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow plate
Size:0.16 × 0.13 × 0.08 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.21 mm−1
Diffractometer, scan mode:Bruker APEX-II, φ and ω
θmax, completeness:25.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:24106, 3810, 0.082
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2387
N(param)refined:283
Programs:Bruker [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
S10.16958(6)0.59889(12)0.58433(3)0.0497(2)
O10.17080(15)0.1222(3)0.51448(9)0.0564(6)
H1O0.1710570.0250210.5422640.085*
O20.07960(16)−0.1156(4)0.45720(10)0.0678(7)
O30.12752(13)0.4501(3)0.19721(8)0.0500(5)
H3O0.1318100.5376520.1680890.075*
O40.14698(15)0.7723(3)0.24669(8)0.0537(6)
O50.28494(13)1.0473(3)0.32101(9)0.0474(5)
O60.41696(16)1.1628(4)0.50389(9)0.0717(7)
O70.17262(15)0.8413(3)0.60476(8)0.0574(6)
N10.22718(14)0.7114(3)0.36826(9)0.0356(5)
H1N0.2284210.7952820.3349980.043*
N20.27689(14)0.7683(3)0.42174(9)0.0360(5)
N30.38148(15)1.2718(4)0.38409(10)0.0437(6)
H3N0.4065491.2848420.4246170.052*
C10.17745(16)0.5170(4)0.36289(11)0.0330(6)
C20.13361(16)0.4438(4)0.30374(11)0.0350(6)
C30.08753(17)0.2463(4)0.29796(13)0.0406(7)
H3A0.0589760.1962530.2589490.049*
C40.08340(18)0.1229(4)0.34923(12)0.0400(7)
H4A0.051529−0.0086850.3447400.048*
C50.12660(17)0.1942(4)0.40753(12)0.0358(6)
C60.17394(17)0.3903(4)0.41447(12)0.0363(6)
H6A0.2033560.4372100.4536060.044*
C70.32522(16)0.9480(4)0.42659(12)0.0364(6)
C80.32830(17)1.0927(4)0.37279(12)0.0367(6)
C90.39780(17)1.4298(4)0.34107(12)0.0394(6)
C100.45815(19)1.5942(5)0.36409(14)0.0486(7)
H10A0.4859771.5967940.4058130.058*
C110.4766(2)1.7534(5)0.32477(16)0.0566(8)
H11A0.5178461.8621670.3402060.068*
C120.4356(2)1.7556(5)0.26347(16)0.0564(8)
H12A0.4485341.8650530.2374730.068*
C130.3753(2)1.5947(5)0.24091(14)0.0507(8)
H13A0.3466661.5959060.1993420.061*
C140.35629(19)1.4303(5)0.27910(13)0.0457(7)
H14A0.3157511.3203780.2631660.055*
C150.13728(17)0.5748(5)0.24744(12)0.0382(6)
C160.12196(19)0.0521(5)0.46152(13)0.0432(7)
C170.37487(19)0.9915(5)0.49014(13)0.0498(8)
C180.3744(2)0.8217(6)0.53924(14)0.0684(10)
H18A0.4248020.8420140.5725810.103*
H18B0.3754950.6753540.5222290.103*
H18C0.3225310.8389620.5544040.103*
C190.0702(2)0.4970(6)0.59526(18)0.0715(10)
H19A0.0229070.5698610.5671480.107*
H19B0.0663210.5255330.6369560.107*
H19C0.0669430.3397050.5876750.107*
C200.2413(2)0.4575(5)0.64531(15)0.0623(9)
H20A0.2998850.5082230.6483650.093*
H20B0.2380910.3004840.6372500.093*
H20C0.2248030.4869240.6834100.093*

Source of material

(Z)-2-(2-(1,3-dioxo-1-(phenylamino)butan-2-ylidene)hydrazineyl) terephthalic acid was synthesized by aqueous diazotization of 2-aminoterephthalic acid with subsequent coupling with 3-oxo-N-phenylbutanamide [3, 4] .

Diazotization: A 10 mmol portion of 2-aminoterephthalic acid was dissolved in 50 mL of water upon addition of 0.80 g of Solid NaOH. The solution was cooled in an ice bath to 0 °C and 10 mmol of NaNO2 were added with subsequent addition of 2 mL 33% HCl in portions of 0.4 mL for 1 h, under vigorous stirring. During the reaction, the temperature of the mixture must not exceed +5 °C. The obtained diazonium salt was used for the next stage (see below).

Azocoupling: 10 mmol of NaOH were added to a mixture of 10 mmol of 3-oxo-N-phenylbutanamide in 50 mL ethanol. The solution was cooled in an ice bath, and a suspension of the diazonium salt (prepared according to the procedure described above) was added in two equal portions under rigorous stirring for 1 h. The formed yellow precipitate of (Z)-2-(2-(1,3-dioxo-1-(phenylamino)butan-2-ylidene)hydrazineyl)terephthalic acid was filtered off, recrystallized from a mixture methanol-dimethylsulfoxide (50:1, v/v) and dried in air. Yield 84% (based on 3-oxo-N-phenylbutanamide), yellow powder, soluble in DMSO, ethanol and dimethylformamide and insoluble in non-polar solvents. The formed yellow precipitate of the title was filtered off, recrystallized from a mixture methanol-dimethylsulfoxide (50:1, v/v) and dried in air. Anal. Calcd. for C20H21N3O7S (M = 447.46): C, 53.69; H, 4.73; N, 9.39. Found: C, 53.58; H, 4.70; N, 9.36%. IR (KBr): 3441 (br.) ν(H2O), 2498 ν(NH), 1664 ν(C=O), 1600 ν(C=N) cm−1. MS (ESI) (positive ion mode): m/z: 370.10 [M–DMSO + H]+ and 79.10 [DMSO + H]+. 1H NMR (DMSO-d6): δ 2.44 (s, 3H, CH3), 2.50 (s, 6H, 2CH3 signals of DMSO overlapped with the solvent peak), 7.25–8.40 (8H, Ar—H), 12.85 and 13.11 (s, 2H, OH), 16.00 (s, 1H, NH). 13C{1H} (DMSO-d6): δ 26.33 (CH3), 39.52 (signals of DMSO overlapped with the solvent peak), 115.69 (Ar—H), 116.44 (Ar—H), 120.73 (2Ar—H), 124.13 (Ar—H), 124.94 (Ar—H), 129.41 (2Ar—H), 131.15 (Ar—COOH), 131.79 (Ar—COOH), 135.23 (C=N), 137.89 (Ar—CNH), 143.93 (Ar—NH—N), 161.18 and 166.44 (—COOH), 168.89 and 199.47 (C=O).

Experimental details

H atoms were located in the difference Fourier map, but refined with fixed individual displacement parameters, using riding models with C—H distances of 0.93 Å (for aromatic rings), N—H distances of 0.90 Å; O—H distances of 0.85 Å and C—H distances 0.96 for methyl group with U(H) values of 1.2 Ueq (C,N,O) and 1.5 Ueq(C) (for CH3).

Comment

No covalent interactions have been extensively used as a synthetic tool in the synthesis, catalysis and design of materials [5], [6], [7], [8], [9], [10], [11], [12], [13], [14]. “σ-hole” directed bonding interactions, such as halogen bonding, chalcogen bonding, pnicogen bonding and tetrel bonding, plays a crucial role in controlling the molecular arrangement and further properties of crystal materials due to its moderate strength, directionality and tunability [10], [11], [14], [15], [16], [17], [18], [19], [20], [21].

In the title structure, the organic hydrazine molecule is essentially planar, (r.m.s. deviation = 0.174 Å) with a maximum deviation of 0.646(2) and −0.491(2) Å for the O3 and O4 atoms. All carbonyl groups O atoms are involved in intramolecular hydrogen bond interactions to hydrogen atoms of amino and phenyl groups, giving a S(6) motif in each case (cf. the figure) [22]. Both hydroxyl groups H atoms are involved in intermolecular hydrogen bond interactions to O atoms of dimethyl sulfoxide molecules linking the molecules into chains with graph-set notation C(13) along the [001] direction [22]. The bond lengths and angles are in the expected ranges.

Acknowledgements

IB thanks to Fondequip (EQM13–0021). G⋅Z⋅M⋅ thanks Baku State University.

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Received: 2018-06-20
Accepted: 2018-09-05
Published Online: 2018-09-27
Published in Print: 2018-12-19

©2018 Gunay Z. Mammadova et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  39. Crystal structure of N-(4-methoxybenzyl)pyridazin-3-amine- a rare Z′ = 4 structure, C12H13N3O
  40. Crystal structure of bis(perchlorato-κ1O)-bis(3,4,5-trimethoxy-N-(pyridin-2-yl)benzamide-κ2N,O)copper(II), C32H30Cl2CuN4O16
  41. Crystal structure of methyl 4-methyl-2,5-di(pyridin-4-yl)-1H-pyrrole-3-carboxylate monohydrate C17H15N3O2⋅H2O
  42. Crystal structure of dimethyl 5-(10-(methoxycarbonyl)anthracen-9-yl) isophthalate,C26H20O6
  43. Crystal structure of tert-butyl (R)-(1-(benzylamino)-3-methoxy-1-oxopropan-2-yl)carbamate, C16H24N2O4
  44. Crystal structure of aqua-bis(1,5-dimethyl-2-phenyl-4-(((E)-4-pyridylmethylene)amino)pyrazolidin-3-one-κN)-(nitrato-κO)-(nitrato-κ2O,O′)zinc(II), C34H34N10O9Zn
  45. Crystal structure of catena-poly[dichlorido-(μ2-1,5-dimethyl-2-phenyl-4-((pyridin-4-ylmethylene)amino)-1,2-dihydro-3H-pyrazol-3-one-κ2N:O)cobalt(II)] – methanol (1/1), C18H20Cl2CoN4O2
  46. Crystal structure of poly[diaqua-bis(μ2-1-(4-(1H-imidazol-1-yl)benzyl)-1H-1,2,4-triazole-κ2N:N′)manganese(II)]bis(2-carboxybenzoate) dihydrate, MnC40H40N10O12
  47. The crystal structure of 4-((3,4-dichlorobenzylidene)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one, C18H15Cl2N3O
  48. Crystal structure of bis(2-methoxy-6-((2-(pyrimidin-2-yl)hydrazono)methyl)phenolato-κ3N,N′,O)iron(III) perchlorate, C24H22N8O8ClFe
  49. The crystal structure of 2-[4-hydroxy-3-methoxyphenyl]-4,4,5,5-tetramethylimidazoline-3-oxide-1-oxyl, C14H19N2O4
  50. Crystal structure of diaqua-bis(3,3-dimethylacrylato-κ2O,O′)zinc(II), C10H18ZnO6
  51. Crystal structure of dichloro-tetrakis[(E)-1-(4-chlorophenyl)-4,4-dimethyl-2-(1H-1,2,4-triazol-1-yl)pent-1-en-3-ol-κN]cadmium (II), C60H74CdCl6N12O4
  52. Crystal structure of (20R)-20,25-epoxy-dammaran-3,12-dione, C30H48O3
  53. Crystal structure of (E)-3′,6′-bis(ethylamino)-2′,7′-dimethyl-2-((pyridin-2-ylmethylene)amino)spiro[isoindoline-1,9′-xanthen]-3-one, C32H31N5O2
  54. The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O
  55. Crystal structure of (2,2′-bipyridine-κ2N,N′)bis(tri(p-tolyl)phosphine-κP)copper(I) tetrafluoroborate – 4,4′-bipyridine (2/1), C57H54BCuF4N3P2
  56. The crystal structure of 2,6-dimethyl-3,5-dinitrocyclohexa-2,5-diene-1,4-dione, C8H6N2O6
  57. The crystal structure of 2,3-dimethyl-1,4-dinitrobenzene – a Z′ = 4 structure, C8H8N2O4
  58. Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb
  59. Crystal structure of 2-(4-fluorophenyl)-N-phenyl-2-(phenylamino)ethanesulfonamide – toluene (1/0.5), C23.5H23FN2O2S
  60. Crystal structure of pyrene-4-aldehyde, C17H10O
  61. Crystal structure of 2-(furan-2-yl)-5-methyl-1,3-dioxane-5-carboxylic acid, C10H12O5
  62. Crystal structure of 2-(4-chlorophenyl)-3-phenyl-1,8-naphthyridine, C20H13N2Cl
  63. Crystal structure and photochromism of 1-(2-ethyl-5-formylthiophen-3yl)-2-(2-cyano-1,5-dimethyl-4-pyrrl)-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C19H14F6N2OS
  64. Crystal structure of 2-(4-bromophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16BrIN2
  65. Crystal structure of 2-(4-(dimethylamino)phenyl)-10-methylacridin-9(10H)-one, C22H20N2O
  66. Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S
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