Home Physical Sciences Crystal structure of poly[dodekais(μ2-2,6-difluorobenzoato-κ2O:O′)-bis((μ3-hexamethylenetetramine-κ3N:N′:N′′)hexacopper(II)], C48H30N4O12F12Cu3
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Crystal structure of poly[dodekais(μ2-2,6-difluorobenzoato-κ2O:O′)-bis((μ3-hexamethylenetetramine-κ3N:N′:N′′)hexacopper(II)], C48H30N4O12F12Cu3

  • Xiao Wei , Dong Aiqin , Bao Guang-Ming , Peng Xiong-Xin , Sun Ting-Ting , Hu Chun-Yan and Yuan Hou-Qun EMAIL logo
Published/Copyright: October 22, 2018

Abstract

C48H30N4O12F12Cu3, monoclinic, P21/n (no. 14), a = 12.9112(5) Å, b = 28.1127(6) Å, c = 14.2324(5) Å, β = 110.665(4)°, V = 4833.5(3) Å3, Z = 4, Rgt(F) = 0.0489, wRref(F2) = 0.1108, T = 173(10) K.

CCDC no.: 1871361

A part of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Green block
Size:0.2 × 0.1 × 0.08 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.42 mm−1
Diffractometer, scan mode:Xcalibur, ω-scans
θmax, completeness:27°, >98%
N(hkl)measured, N(hkl)unique, Rint:27059, 10405, 0.054
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 7283
N(param)refined:709
Programs:CrysAlisPRO [1], SHELX [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cu10.94722(4)0.27774(2)0.19889(3)0.01874(11)
Cu20.83750(3)0.21729(2)0.05955(3)0.01827(11)
O10.9699(2)0.20854(9)0.0237(2)0.0301(6)
C11.0556(3)0.23172(12)0.0729(3)0.0202(8)
O21.0651(2)0.25941(8)0.14419(19)0.0250(6)
C21.1551(3)0.22618(12)0.0418(3)0.0219(8)
C31.1911(3)0.18307(14)0.0186(3)0.0333(10)
F11.1326(2)0.14376(8)0.0240(2)0.0531(8)
C41.2825(4)0.17730(16)−0.0079(4)0.0464(12)
H11.3045240.147256−0.0207550.056*
C51.3409(4)0.21749(18)−0.0149(4)0.0534(14)
H21.4024300.214659−0.0340870.064*
C61.3089(4)0.26156(16)0.0062(4)0.0491(13)
H31.3477260.2886950.0010020.059*
C71.2185(4)0.26473(14)0.0352(3)0.0373(11)
F21.1879(2)0.30870(8)0.0541(2)0.0636(9)
O30.9879(2)0.22272(9)0.2878(2)0.0325(7)
C80.9536(3)0.18162(13)0.2578(3)0.0229(8)
O40.8946(2)0.17082(8)0.17000(19)0.0290(6)
C90.9854(3)0.14263(13)0.3354(3)0.0257(9)
C101.0243(3)0.15065(13)0.4381(3)0.0284(9)
F31.0359(2)0.19562(8)0.47232(17)0.0418(6)
C111.0511(4)0.11529(16)0.5087(4)0.0531(14)
H41.0763310.1227140.5767120.064*
C121.0404(6)0.06916(19)0.4781(4)0.087(2)
H51.0599370.0448570.5254180.104*
C131.0008(6)0.05827(17)0.3773(4)0.085(2)
H60.9908280.0267540.3561940.102*
C140.9760(5)0.09465(15)0.3084(3)0.0517(14)
F40.9428(3)0.08212(9)0.2109(2)0.0716(10)
O50.8026(2)0.27557(9)−0.0258(2)0.0335(7)
C150.8339(3)0.31664(13)0.0070(3)0.0237(8)
O60.8940(2)0.32632(8)0.0960(2)0.0305(6)
C160.8002(3)0.35767(14)−0.0641(3)0.0313(9)
C170.7602(3)0.35284(15)−0.1684(3)0.0355(10)
F50.7502(2)0.30925(9)−0.20839(18)0.0508(7)
C180.7307(5)0.39014(18)−0.2341(4)0.0604(15)
H70.7057580.384812−0.3029820.072*
C190.7384(6)0.4351(2)−0.1974(4)0.090(2)
H80.7336100.460872−0.2396230.108*
C20Aa0.7542(9)0.4431(4)−0.0907(8)0.050(3)*
H9Aa0.7316870.470275−0.0658620.060*
C20Ba0.7988(9)0.4428(4)−0.1008(8)0.048(3)*
H9Ba0.8336480.471846−0.0791090.058*
C210.8073(5)0.40451(16)−0.0322(4)0.0707(18)
F6Aa0.8148(5)0.41333(18)0.0713(4)0.0471(14)*
F6Ba0.8679(5)0.41503(18)0.0632(4)0.0460(14)*
O70.7163(2)0.23194(9)0.10723(19)0.0267(6)
C220.7263(3)0.25756(12)0.1819(3)0.0222(8)
O80.8099(2)0.28187(9)0.2301(2)0.0341(7)
C230.6297(3)0.25879(13)0.2170(3)0.0257(9)
C240.5947(3)0.29936(14)0.2514(3)0.0313(9)
F70.6480(2)0.34066(8)0.2494(2)0.0497(7)
C250.5076(4)0.30069(16)0.2856(3)0.0424(11)
H100.4861860.3291250.3067590.051*
C260.4527(4)0.25878(16)0.2879(3)0.0444(12)
H110.3943100.2587680.3118430.053*
C270.4838(4)0.21722(16)0.2550(4)0.0498(13)
H120.4468580.1889360.2561270.060*
C280.5706(4)0.21815(14)0.2203(4)0.0409(11)
F80.6002(3)0.17640(9)0.1902(3)0.0760(11)
N10.7281(2)0.16800(9)−0.0511(2)0.0144(6)
C290.7870(3)0.14397(11)−0.1111(3)0.0176(7)
H190.8209560.167842−0.1401100.021*
H200.8454220.124085−0.0671290.021*
N20.7124(2)0.11478(9)−0.1913(2)0.0164(6)
C300.6250(3)0.14523(12)−0.2572(3)0.0190(8)
H210.5750400.126122−0.3108510.023*
H220.6578630.169067−0.2873160.023*
N30.5607(2)0.16949(9)−0.2016(2)0.0139(6)
C310.5117(3)0.13256(11)−0.1567(3)0.0163(7)
H230.4603560.113585−0.2097090.020*
H240.4705190.147643−0.1195450.020*
N40.5977(2)0.10110(9)−0.0883(2)0.0147(6)
C320.6767(3)0.13076(11)−0.0079(3)0.0167(7)
H250.6377980.1457020.0314420.020*
H260.7341230.1105770.0365300.020*
C330.6605(3)0.07901(11)−0.1473(3)0.0185(8)
H270.7172770.058282−0.1036870.022*
H280.6105060.059678−0.2005040.022*
C340.6396(3)0.19779(11)−0.1200(2)0.0152(7)
H290.5999300.213633−0.0824270.018*
H300.6725390.222072−0.1490170.018*
Cu30.52604(3)0.04192(2)−0.02942(3)0.01926(11)
O90.3697(2)0.06138(8)−0.0691(2)0.0262(6)
C350.3034(3)0.03038(12)−0.0613(3)0.0218(8)
O100.3271(2)−0.01021(8)−0.0226(2)0.0273(6)
C360.1821(3)0.04197(12)−0.1025(3)0.0217(8)
C370.1171(3)0.04125(13)−0.0426(3)0.0282(9)
F90.1685(2)0.03229(9)0.05662(19)0.0441(6)
C380.0053(3)0.05003(14)−0.0790(4)0.0374(11)
H13−0.0351050.049576−0.0363400.045*
C39−0.0459(4)0.05952(14)−0.1797(4)0.0425(12)
H14−0.1217710.065108−0.2054950.051*
C400.0144(3)0.06082(14)−0.2429(4)0.0395(11)
H15−0.0199390.067351−0.3109740.047*
C410.1266(3)0.05222(13)−0.2029(3)0.0297(9)
F100.1851(2)0.05218(9)−0.26494(18)0.0491(7)
O110.5520(2)0.06365(9)0.1073(2)0.0306(6)
C420.5496(3)0.03463(13)0.1736(3)0.0264(9)
O120.5173(2)−0.00798(9)0.1589(2)0.0293(6)
C430.5901(4)0.05191(14)0.2806(3)0.0341(10)
C440.5435(5)0.03883(17)0.3500(4)0.0623(16)
F11Aa0.4341(5)0.0167(2)0.3072(5)0.0561(17)*
F11Ba0.4741(5)0.00145(19)0.3319(4)0.0415(14)*
C450.5785(6)0.0550(2)0.4477(4)0.079(2)
H160.5423250.0458100.4908700.095*
C460.6678(6)0.08476(19)0.4795(4)0.078(2)
H170.6935700.0959320.5452710.093*
C470.7191(5)0.0981(2)0.4148(4)0.0771(19)
H180.7801230.1181900.4360280.093*
C480.6796(5)0.08140(17)0.3175(4)0.0545(14)
F120.7341(3)0.09399(12)0.2564(2)0.0808(10)
  1. aOccupancy: 0.5.

Source of material

All reagents and solvents were purchased from commercial sources and used as received. An aqueous solution (15 mL) of 2,6-difluorobenzoic acid (470 mg, 3.0 mmol), NaHCO3 (240 mg, 3.0 mmol), and hexamethylenetetramine (70 mg, 0.5 mmol) was mixed with a DMF/MeOH solution (15 mL) of Cu(NO3)2⋅3H2O (450 mg, 3.3 mmol). The light blue solution was allowed to stand at room temperature to give green plate crystals within two weeks (yield 220 mg, 18%).

Experimental details

H atoms bound to C atoms were places in calculated positions and refined as riding on their parent atoms, with C—H = 0.93 Å (aromatic), C—H = 0.96 Å (methylene), C—H = 0.97 Å (ethylene), and with Uiso(H) = 1.5 Ueq(C) for methyl H atoms and 1.2 Ueq(C) for all other H atoms. The atoms of C20, F6, and F11 were disordered and the components of disordered atoms were refined isotropically.

Discussion

In the past decades, design and construction of transition metal complexes have received much attention owing to their structures as well as their potential applications [3], [4], [5]. The selection and utilization of different organic ligands is considered to be a key point for rational designing and building targeted structures. A number of multicarboxylates and neutral N-containing heterocyclic molecules are usually employed to obtain novel structures. Compared with the using of complicated organic ligands, the very simple benzoic acid/derivatives and simple heterocyclic compound hexamethylenetetramine (hmt), have been explored to a less extent. However, there are some polynuclear clusers with fascinating structures and properties constructed by benzoic derivatives have been reported [6], [7] . On the other hand, hexamethylenetetramine having four coordinating N atoms in a diamandoid-like geometry, is a versatile ligand, because it is capable of various coordination modes that span from terminal monodentate to μ2−, μ3−, or μ4-bridging mode [8]. Recently, we have reported some one-dimensional structures which were built by hmt and monocarboxylates. In the course of our study on construction new structures based on M-hmt-monocarboxylate system [9], [10], [11]. Herein, we report a new two-dimensional structure [{Cu2(dfba)4}3(hmt)2]n (dfba = 2,6-difluorobenzoate).

X-ray crystal structural analysis revealed that the asymmetric unit of the title complex is composed of three Cu2+ ions, six dfba ligands and one hmt ligand. Each Cu2+ ion is coordinated in a square-pyramidal geometry with four oxygen atoms from four dfba ligands and one nitrogen atom from a hmt ligand. The four oxygen atoms are located in the equatorial positions and the coordinated nitrogen atom is located at the axial position. The four dfba ligands using four carboxylate groups link two Cu2+ ions with distances of 2.6164(6) Å for Cu1⋯Cu2, and 2.6659(8) Å for Cu3⋯Cu3i (Symmetry code: ix + 1, − y, − z), respectively, to form [Cu2(COO)4] paddle wheel building blocks. Each hexamethylenetetramine ligands links the vertices of [Cu2(COO)4] paddlewheel units through three N atoms using μ3-bridging mode (Cu2—N1 = 2.196(3), Cu3—N4 = 2.207(3), and Cu1—N3ii = 2.211(3) Å, Symmetry code: iix + 1/2, − y + 1/2, z + 1/2). Therefore, a 2-D honeycomb structure is formed in the title complex.

Award Identifier / Grant number: 20112BBF60024

Funding statement: This work was supported by the National Key Research and Development Program of China (No. 2017YFD0501406), the National Nature Foundation of China (No. 21461011 and 31560712), the Natural Science Foundation of Jiangxi Province (No. 20112BBF60024), and the Foundation of Jiangxi Educational Committee (GJJ170245, GJJ170257).

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Received: 2018-07-05
Accepted: 2018-10-04
Published Online: 2018-10-22
Published in Print: 2018-12-19

©2018 Xiao Wei et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  34. Crystal structure of (2Z,2′Z)-1,1′-(pyridine-2,6-diyl) bis(3-hydroxy-3-phenylprop-2-en-1-one), C23H17NO4
  35. Crystal structure of ethyl 2-amino-4-(3-bromophenyl)-5-oxo-4H,5H-pyrano[3,2-c]chromene-3-carboxylate, C21H16BrNO5
  36. Crystal structure of bis(μ2-3,5-dichloro-2-oxidobenzoato-κ4O,O′:O′,O′′)-hexakis(μ2-pivalato-κ2O:O′)-bis(pivalato-κ2O,O′)-tetrakis(1,10-phenanthroline-κ2N,N′)tetragadolinium(III), C102H108Cl4Gd4N8O22
  37. Crystal structure of catena-poly[aqua-bis(formato-κ1O)-(μ2-1,1′-(oxybis(1,4-phenylene))-bis(1H-1,2,4-triazole)-κ2N:N′)copper(II)]hydrate, C18H16CuN6O6
  38. Crystal structure of 5-bromo-2-(naphthalen-6-yl)pyridine, C15H10BrN
  39. Crystal structure of N-(4-methoxybenzyl)pyridazin-3-amine- a rare Z′ = 4 structure, C12H13N3O
  40. Crystal structure of bis(perchlorato-κ1O)-bis(3,4,5-trimethoxy-N-(pyridin-2-yl)benzamide-κ2N,O)copper(II), C32H30Cl2CuN4O16
  41. Crystal structure of methyl 4-methyl-2,5-di(pyridin-4-yl)-1H-pyrrole-3-carboxylate monohydrate C17H15N3O2⋅H2O
  42. Crystal structure of dimethyl 5-(10-(methoxycarbonyl)anthracen-9-yl) isophthalate,C26H20O6
  43. Crystal structure of tert-butyl (R)-(1-(benzylamino)-3-methoxy-1-oxopropan-2-yl)carbamate, C16H24N2O4
  44. Crystal structure of aqua-bis(1,5-dimethyl-2-phenyl-4-(((E)-4-pyridylmethylene)amino)pyrazolidin-3-one-κN)-(nitrato-κO)-(nitrato-κ2O,O′)zinc(II), C34H34N10O9Zn
  45. Crystal structure of catena-poly[dichlorido-(μ2-1,5-dimethyl-2-phenyl-4-((pyridin-4-ylmethylene)amino)-1,2-dihydro-3H-pyrazol-3-one-κ2N:O)cobalt(II)] – methanol (1/1), C18H20Cl2CoN4O2
  46. Crystal structure of poly[diaqua-bis(μ2-1-(4-(1H-imidazol-1-yl)benzyl)-1H-1,2,4-triazole-κ2N:N′)manganese(II)]bis(2-carboxybenzoate) dihydrate, MnC40H40N10O12
  47. The crystal structure of 4-((3,4-dichlorobenzylidene)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one, C18H15Cl2N3O
  48. Crystal structure of bis(2-methoxy-6-((2-(pyrimidin-2-yl)hydrazono)methyl)phenolato-κ3N,N′,O)iron(III) perchlorate, C24H22N8O8ClFe
  49. The crystal structure of 2-[4-hydroxy-3-methoxyphenyl]-4,4,5,5-tetramethylimidazoline-3-oxide-1-oxyl, C14H19N2O4
  50. Crystal structure of diaqua-bis(3,3-dimethylacrylato-κ2O,O′)zinc(II), C10H18ZnO6
  51. Crystal structure of dichloro-tetrakis[(E)-1-(4-chlorophenyl)-4,4-dimethyl-2-(1H-1,2,4-triazol-1-yl)pent-1-en-3-ol-κN]cadmium (II), C60H74CdCl6N12O4
  52. Crystal structure of (20R)-20,25-epoxy-dammaran-3,12-dione, C30H48O3
  53. Crystal structure of (E)-3′,6′-bis(ethylamino)-2′,7′-dimethyl-2-((pyridin-2-ylmethylene)amino)spiro[isoindoline-1,9′-xanthen]-3-one, C32H31N5O2
  54. The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O
  55. Crystal structure of (2,2′-bipyridine-κ2N,N′)bis(tri(p-tolyl)phosphine-κP)copper(I) tetrafluoroborate – 4,4′-bipyridine (2/1), C57H54BCuF4N3P2
  56. The crystal structure of 2,6-dimethyl-3,5-dinitrocyclohexa-2,5-diene-1,4-dione, C8H6N2O6
  57. The crystal structure of 2,3-dimethyl-1,4-dinitrobenzene – a Z′ = 4 structure, C8H8N2O4
  58. Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb
  59. Crystal structure of 2-(4-fluorophenyl)-N-phenyl-2-(phenylamino)ethanesulfonamide – toluene (1/0.5), C23.5H23FN2O2S
  60. Crystal structure of pyrene-4-aldehyde, C17H10O
  61. Crystal structure of 2-(furan-2-yl)-5-methyl-1,3-dioxane-5-carboxylic acid, C10H12O5
  62. Crystal structure of 2-(4-chlorophenyl)-3-phenyl-1,8-naphthyridine, C20H13N2Cl
  63. Crystal structure and photochromism of 1-(2-ethyl-5-formylthiophen-3yl)-2-(2-cyano-1,5-dimethyl-4-pyrrl)-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C19H14F6N2OS
  64. Crystal structure of 2-(4-bromophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16BrIN2
  65. Crystal structure of 2-(4-(dimethylamino)phenyl)-10-methylacridin-9(10H)-one, C22H20N2O
  66. Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S
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