Home Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S
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Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S

  • Jin-Qiang Liu EMAIL logo and Li Ji
Published/Copyright: October 18, 2018

Abstract

C24H27FN2O9S, orthorhombic, P212121 (no. 19), a = 11.2301(12) Å, b = 11.9074(13) Å, c = 20.738(2) Å, V = 2773.1(5) Å3, Z = 4, Rgt(F) = 0.0389, wRref(F2) = 0.1022, T = 296(2) K.

CCDC no.: 1871995

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Block, clear light colorless
Size:0.35 × 0.26 × 0.2 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.17 mm−1
Diffractometer, scan mode:Bruker SMART, φ and ω-scans
θmax, completeness:25.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:21185, 5147, 0.033
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 4151
N(param)refined:339
Programs:Bruker programs [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.3530(3)1.0512(3)0.67981(15)0.0409(7)
H10.35921.04760.72690.049*
C20.3265(3)1.1702(3)0.66051(15)0.0419(7)
H20.36501.22760.68270.050*
C30.2520(3)1.1981(3)0.61397(16)0.0417(7)
C40.1797(3)1.1127(2)0.57758(15)0.0415(7)
H40.09641.11800.59130.050*
C50.2230(3)0.9940(3)0.58784(15)0.0403(7)
H50.29360.97990.56130.048*
C60.2520(3)0.9753(2)0.65820(15)0.0412(7)
H60.18120.99120.68420.049*
C70.2350(3)1.3189(3)0.59576(19)0.0516(9)
H7A0.26941.36760.62830.062*
H7B0.27341.33450.55480.062*
C80.0722(4)1.4440(3)0.59106(18)0.0611(10)
C9−0.0603(4)1.4493(4)0.5804(3)0.0884(14)
H9A−0.08211.52360.56700.133*
H9B−0.10081.43110.61980.133*
H9C−0.08251.39640.54750.133*
C100.0844(4)1.1481(4)0.4762(2)0.0679(11)
C110.1125(5)1.1723(5)0.4067(2)0.1087(19)
H11A0.10021.25070.39820.163*
H11B0.06111.12860.37950.163*
H11C0.19391.15310.39810.163*
C120.1502(4)0.8413(3)0.5237(2)0.0675(11)
C130.0488(4)0.7619(4)0.5168(3)0.0916(15)
H13A0.07590.69410.49650.137*
H13B−0.01220.79570.49080.137*
H13C0.01710.74450.55860.137*
C140.2591(3)0.8120(3)0.7241(2)0.0608(10)
C150.2994(5)0.6932(4)0.7252(3)0.1016(18)
H15A0.29980.66630.76880.152*
H15B0.37840.68830.70760.152*
H15C0.24620.64820.69980.152*
C160.5511(3)0.9605(3)0.68278(15)0.0424(7)
C170.6799(3)0.9809(3)0.58557(19)0.0590(9)
C180.7937(4)0.9455(4)0.5534(2)0.0810(14)
H18A0.86030.96960.57890.122*
H18B0.79840.97900.51130.122*
H18C0.79520.86520.54930.122*
C190.7411(3)0.8604(3)0.67526(16)0.0471(8)
C200.7272(3)0.7470(3)0.66562(18)0.0554(9)
H200.66290.72030.64190.066*
C210.8092(4)0.6728(3)0.6913(2)0.0680(11)
H210.80100.59580.68530.082*
C220.9016(4)0.7148(4)0.7255(2)0.0738(13)
C230.9174(3)0.8257(4)0.7361(2)0.0765(12)
H230.98170.85120.76020.092*
C240.8357(3)0.9008(3)0.7104(2)0.0621(10)
H240.84490.97760.71680.075*
F10.9807(2)0.6407(3)0.75128(17)0.1223(12)
N10.4674(2)1.0179(2)0.65179(12)0.0432(6)
H1A0.48131.03690.61250.052*
N20.6556(2)0.9375(2)0.64669(13)0.0461(6)
O10.1088(2)1.33768(19)0.59092(12)0.0551(6)
O20.1375(3)1.5214(3)0.59838(19)0.0986(11)
O30.1874(2)1.1378(2)0.50974(11)0.0528(6)
O4−0.0111(3)1.1406(4)0.49946(18)0.1088(13)
O50.12876(19)0.91730(19)0.57010(12)0.0515(6)
O60.2413(4)0.8374(3)0.4945(2)0.1198(16)
O70.2836(2)0.85897(18)0.66569(12)0.0548(6)
O80.2122(3)0.8618(3)0.76675(15)0.0772(8)
O90.6118(3)1.0434(3)0.55762(14)0.0813(9)
S10.53935(8)0.91842(8)0.75889(4)0.0576(3)

Source of material

The title compound was synthesized with a total yield of 95% starting with (1S,2S,3R,6S)-6-amino-4-(hydroxymethyl) cyclohex-4-ene-1,2,3-triol, 1-fluoro-4-isothiocyanatobenzene and acetic anhydride as raw materials. Colorless crystals suitable for X-ray diffraction study were obtained from a trichloromethane solution.

Experimental details

The hydrogen atoms were assigned with common isotropic displacement factors Uiso(H) = 1.2 times Ueq(C, cyclohexene ring, benzene ring), and Uiso(H) = 1.5 times Ueq(C, methyl). The final refinement by using geometrical restraints, with C—H = 0.98 Å (cyclohexene ring), C—H = 0.96 Å (methyl), and C—H = 0.93 Å (benzene ring). The Flack parameter (0.09(4)) was calculated based on 1519 quotients [3].

Discussion

Chiral glycosyl thioureas have been attracted attention because they can be served as chiral organocatalysts for many reactions such as Michael additions [4] and Mannich reactions [5], [6]. Synthetic methods to chiral glycosyl thioureas were reported [7]. However, the crystal structure of chiral glycosyl thiourea, which is very important for the confirmation of the compound, is rarely reported.

As shown in the figure, the title compound features a six-membered cyclohexene ring that adopts a half-chair conformation with C1/C2/C3/C4 atoms in one plane. The bond length of C2—C3 is 1.322(3) Å, showing the characteristics of the double bond. Other C—C bond lengths of the cyclohexene ring are in the range of 1.499(4)–1.519(3) Å. Three acetoxyl substituents (CH3CO2−) occupy the equatorial bond positions, while the thiourea fragment occupies the axial bond position. The C17—O9 bond distance of 1.215(3) Å is longer than other four carbonyl groups, which may be caused by the stronger giving electrons ability of nitrogen than oxygen, and the formation of an intramolecular hydrogen bond (cf. the figure).

Acknowledgements

This work was supported by the Key Scientific Research Foundation of Education Committee of Henan province (No. 17B530003).

References

1. Bruker. APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, WI, USA (2012).Search in Google Scholar

2. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

3. Dolomanov, O. V.; Bourhis, L. J.; Gildea, R. J.; Howard, J. A. K.; Puschmann, H.: OLEX2: a complete structure solution, refinement and analysis program. J. Appl. Crystallogr. 42 (2009) 339–341.10.1107/S0021889808042726Search in Google Scholar

4. Liu, K.; Cui, H.-F.; Nie, J.; Dong, K.-Y.; Li, X.-J.; Ma, J.-A.: Highly enantioselective Michael addition of aromatic ketones to nitroolefins promoted by chiral bifunctional primary amine-thiourea catalysts based on saccharides. Org. Lett. 9 (2007) 923–925.10.1021/ol0701666Search in Google Scholar PubMed

5. Qiao, B.; Huang, Y.-J.; Nie, J.; Ma, J.-A.: Highly regio-, diastereo-, and enantioselective Mannich reaction of allylic ketones and cyclic ketimines: access to chiral benzosultam. Org. Lett. 17 (2015) 4608–4611.10.1021/acs.orglett.5b02351Search in Google Scholar PubMed

6. Liu, Y.-J.; Li, J.-S.; Nie, J.; Ma, J.-A.: Organocatalytic asymmetric decarboxylative Mannich meaction of keto acids with cyclic ketiminophosphonates: access to quaternary aminophosphonates. Org. Lett. 20 (2018) 3643–3646.10.1021/acs.orglett.8b01422Search in Google Scholar PubMed

7. Gucchait, A.; Jana, M.; Jana, K.; Misra, A. K.: Preparation of glycosyl thiourea derivatives from glycosyl azides using sulfamic acid and sodium iodide in one-pot. Carbohydr. Res. 434 (2016) 107–112.10.1016/j.carres.2016.09.002Search in Google Scholar PubMed

Received: 2018-08-23
Accepted: 2018-10-08
Published Online: 2018-10-18
Published in Print: 2018-12-19

©2018 Jin-Qiang Liu et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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