Home Crystal structure of (20R)-20,25-epoxy-dammaran-3,12-dione, C30H48O3
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Crystal structure of (20R)-20,25-epoxy-dammaran-3,12-dione, C30H48O3

  • Jian-Qiang Deng , Xiao-Dong Mu , Ruo-Lin Zhao , Zhi Liu , Hang-Jun Tang , Meng He and Qing-Guo Meng EMAIL logo
Published/Copyright: September 29, 2018

Abstract

C30H48O3, orthorhombic, P212121 (no. 19), a = 7.8710(16) Å, b = 13.800(28) Å, c = 24.561(49) Å, V = 2667.9(9) Å3, Z = 4. Rgt(F) = 0.0488, wRref(F2) = 0.1264, T = 293(2) K.

CCDC no.: 1850644

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colorless block
Size:0.24 × 0.20 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.07 mm−1
Diffractometer, scan mode:Bruker P4, ω-scans
θmax, completeness:25.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:36598, 3755, 0.058
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3755
N(param)refined:306
Programs:Bruker programs [1], SHELX [2, 3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
O10.5403(4)0.0979(3)0.93692(15)0.1245(16)
O2−0.2557(2)0.51504(19)0.91667(10)0.0612(7)
O3−0.0353(3)0.81548(16)0.87134(9)0.0503(6)
C10.1790(4)0.2605(2)0.93094(14)0.0466(8)
H1A0.12000.28390.96300.056*
H1B0.09380.23850.90520.056*
C20.2866(5)0.1760(3)0.9469(2)0.0754(12)
H2A0.31140.18220.98540.091*
H2B0.21840.11800.94250.091*
C30.4476(4)0.1598(3)0.91873(14)0.0548(9)
C40.5020(4)0.2195(2)0.86911(13)0.0452(8)
C50.3736(3)0.3029(2)0.85588(12)0.0399(7)
H50.28560.27210.83360.048*
C60.4493(4)0.3811(3)0.81930(13)0.0506(8)
H6A0.53180.41850.83980.061*
H6B0.50770.35090.78900.061*
C70.3111(4)0.4487(3)0.79765(12)0.0493(8)
H7A0.23300.41150.77540.059*
H7B0.36330.49730.77450.059*
C80.2108(3)0.4996(2)0.84292(11)0.0367(7)
C90.1455(3)0.4205(2)0.88304(11)0.0334(6)
H90.06640.38170.86130.040*
C100.2768(3)0.3450(2)0.90543(11)0.0356(7)
C110.0326(4)0.4662(2)0.92820(12)0.0430(7)
H11A−0.01760.41480.94980.052*
H11B0.10320.50510.95210.052*
C12−0.1071(3)0.5289(2)0.90503(12)0.0391(7)
C13−0.0461(3)0.6048(2)0.86643(11)0.0353(6)
H130.03830.64370.88600.042*
C140.0494(3)0.5526(2)0.81925(11)0.0364(7)
C150.0773(4)0.6385(2)0.78049(12)0.0467(8)
H15A0.17120.67840.79280.056*
H15B0.10110.61600.74390.056*
C16−0.0903(4)0.6955(3)0.78222(12)0.0502(8)
H16A−0.16620.67350.75360.060*
H16B−0.06910.76410.77720.060*
C17−0.1706(3)0.6763(2)0.83944(12)0.0408(7)
H17−0.28020.64380.83440.049*
C180.3301(3)0.5741(2)0.87046(14)0.0474(8)
H18A0.44150.54660.87420.071*
H18B0.28640.59050.90580.071*
H18C0.33640.63150.84850.071*
C190.3944(4)0.3878(2)0.94956(12)0.0450(8)
H19A0.32680.41670.97780.068*
H19B0.46650.43610.93360.068*
H19C0.46310.33710.96480.068*
C20−0.1998(4)0.7701(2)0.87181(12)0.0430(7)
C21−0.3336(4)0.8320(3)0.84224(16)0.0644(10)
H21A−0.36860.88430.86550.097*
H21B−0.43030.79250.83350.097*
H21C−0.28560.85780.80940.097*
C22−0.2601(5)0.7509(3)0.92976(13)0.0587(9)
H22A−0.37800.73060.92890.070*
H22B−0.19380.69860.94530.070*
C23−0.2436(6)0.8396(3)0.96542(15)0.0798(13)
H23A−0.31380.89160.95130.096*
H23B−0.28080.82481.00210.096*
C24−0.0601(7)0.8700(3)0.96583(17)0.0900(15)
H24A0.00780.81840.98150.108*
H24B−0.04750.92680.98870.108*
C250.0072(5)0.8932(3)0.90871(18)0.0675(11)
C260.2010(5)0.8927(4)0.9069(3)0.110(2)
H26A0.24200.82900.91550.166*
H26B0.24440.93820.93300.166*
H26C0.23850.91060.87110.166*
C27−0.0591(6)0.9906(3)0.8879(2)0.0827(13)
H27A−0.02690.99880.85040.124*
H27B−0.01131.04210.90920.124*
H27C−0.18070.99210.89080.124*
C280.5037(5)0.1462(3)0.82144(15)0.0714(12)
H28A0.53360.17910.78840.107*
H28B0.39310.11770.81760.107*
H28C0.58560.09630.82870.107*
C290.6855(4)0.2542(3)0.8783(2)0.0782(13)
H29A0.68610.30550.90470.117*
H29B0.73170.27750.84460.117*
H29C0.75330.20120.89130.117*
C30−0.0752(4)0.4815(3)0.79038(13)0.0520(9)
H30A−0.17040.51700.77630.078*
H30B−0.11440.43400.81600.078*
H30C−0.01750.44960.76100.078*

Source of material

(20R)-20,25-Epoxy-dammaran-3,12-dione {systematic name: (8R,9R,10R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-((R)-2,6,6-trimethyltetrahydro-2H-pyran-2-yl)tetradecahydro-3H-cyclopenta[a]phenanthrene-3,12(2H)-dione)} is synthesized by two-step oxidation reaction in turn.

3-oxo-20(R)-panaxadiol was synthesized by Wu’s method [4]. A solution of (20R)-panaxadiol in CH2Cl2 and pyridinium chlorochromate was stirred for 6 h at room temperature. The solvent was removed under reduced pressure to give a white solid. The white solid was dissolved in ethyl ether and washed with NaHCO3, dried (MgSO4) and concentrated under reduced pressure to give the crude product. The crude products were chromatographied using silica gel and eluted with [petroleum ether-EtOAc (8:1)] to give the pure product. (20R)-20,25-Epoxy-dammaran-3,12-dione is synthesized by reacting 3-oxo-20(R)-panaxadiol with DDQ in 1,4-dioxane at 110 °C temperature heating under reflux for 3 h. The mixture was concentrated in vacuo. The residue was dissolved in water and extracted with ethyl acetate. The organic phase was washed with water, dried over Na2SO4. The residue was separated by silica column chromatography [petroleum ether-EtOAc (8:1)] to give a white solid. (m.p.: 255–257 °C). Analysis calcd. for C30H48O3: 456.36035; found: MS (ES+): m/z 457.36740 (M + 1).

Experimental details

All H atoms were included in calculated positions and refined as riding atoms, with C—H = 0.96–0.97 Å, with Uiso(H) = 1.5 Ueq(C) for methyl H atoms and 1.2 Ueq(C) for all other H atoms. The absolute configuration was derived from the synthesis and the configuration of the educts.

Discussion

Panaxadiol (PD), one of the protopanaxadiol-type of ginsenoside with a dammarane skeleton can be obtained by acid hydrolysate. It has been reported to exhibits pharmacological activities, such as anti-tumor, anti-HIV and regulating cell cycle and apoptosis [5], [6], [7], [8]. Because of its wide biological properties and its potential medicinal value, the extraction, synthesis and biological activity of panaxadiol and its derivatives have attracted much attention. In this paper, we report the crystal structure of the title compound, whose partial synthesis methods have been reported in other journals [4].

In the molecule of the title compound, bond lengths and angles within the five-membered rings are very similar to those given in the literature for panaxadiol [9], [10], [11], [12], [13].

The structure of the title compound and panaxadiol are equivalent except for the substituents at C(3) and C(6). Two carbon-oxygen double bond exist in the compound which was synthesized by two-step oxidation reaction. Both the first ring and the third ring contain a carbon-oxygen double bond. The C—O bond distance (C3—O1) is 1.208(6) Å, The C—O bond distance (C12—O2) is 1.218(4) Å. The distance of C—O Bond (C20—O3) in Tetrahydropyran Ring is 1.438(4) Å and the distance of C—O Bond (C25—O3) is 1.452(5) Å. The C25—O3—C20—C22, O1—C3—C2—C1, O1—C3—C4—C28 and O2—C12—C11—C9 torsion angles are 43.1(4)°, 170.9(4)°, 68.3(4)° and 125.0(3)°, respectively. The C25—O3—C20—C22 torsion angle indicates that the C20 position is R-form.

Acknowledgements

X-ray data were collected at School of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng, 252000, People’s Republic of China. This work was supported by the National Natural Science Foundation of China [No. 81473104] and Shandong graduate education innovation program [SDYY16132].

References

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Received: 2018-07-13
Accepted: 2018-09-15
Published Online: 2018-09-29
Published in Print: 2018-12-19

©2018 Jian-Qiang Deng et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  53. Crystal structure of (E)-3′,6′-bis(ethylamino)-2′,7′-dimethyl-2-((pyridin-2-ylmethylene)amino)spiro[isoindoline-1,9′-xanthen]-3-one, C32H31N5O2
  54. The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O
  55. Crystal structure of (2,2′-bipyridine-κ2N,N′)bis(tri(p-tolyl)phosphine-κP)copper(I) tetrafluoroborate – 4,4′-bipyridine (2/1), C57H54BCuF4N3P2
  56. The crystal structure of 2,6-dimethyl-3,5-dinitrocyclohexa-2,5-diene-1,4-dione, C8H6N2O6
  57. The crystal structure of 2,3-dimethyl-1,4-dinitrobenzene – a Z′ = 4 structure, C8H8N2O4
  58. Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb
  59. Crystal structure of 2-(4-fluorophenyl)-N-phenyl-2-(phenylamino)ethanesulfonamide – toluene (1/0.5), C23.5H23FN2O2S
  60. Crystal structure of pyrene-4-aldehyde, C17H10O
  61. Crystal structure of 2-(furan-2-yl)-5-methyl-1,3-dioxane-5-carboxylic acid, C10H12O5
  62. Crystal structure of 2-(4-chlorophenyl)-3-phenyl-1,8-naphthyridine, C20H13N2Cl
  63. Crystal structure and photochromism of 1-(2-ethyl-5-formylthiophen-3yl)-2-(2-cyano-1,5-dimethyl-4-pyrrl)-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C19H14F6N2OS
  64. Crystal structure of 2-(4-bromophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16BrIN2
  65. Crystal structure of 2-(4-(dimethylamino)phenyl)-10-methylacridin-9(10H)-one, C22H20N2O
  66. Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S
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