Startseite Crystal structure of (E)-3-(dimethylamino)-1-(thiophen-3-yl)prop-2-en-1-one, C9H11NOS
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Crystal structure of (E)-3-(dimethylamino)-1-(thiophen-3-yl)prop-2-en-1-one, C9H11NOS

  • Miri Yoo und Dongsoo Koh ORCID logo EMAIL logo
Veröffentlicht/Copyright: 6. Mai 2021

Abstract

C9H11NOS, monoclinic, P21/n (no. 14), a = 6.0194(4) Å, b = 20.9249(13) Å, c = 7.7103(5) Å, β = 107.783(2)°, V = 924.75(10) Å3, Z = 4, Rgt(F) = 0.0373, wRref(F2) = 0.1061, T = 223(2) K.

CCDC no.: 2079365

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.31 × 0.17 × 0.04 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.30 mm−1
Diffractometer, scan mode:PHOTON II M14, φ and ω
θmax, completeness:28.6°, >99%
N(hkl)measured, N(hkl)unique, Rint:29,440, 2329, 0.041
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2031
N(param)refined:111
Programs:Bruker [1], SHELX [2, 3], Olex2 [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
S10.83574 (7)0.24100 (2)1.03605 (6)0.04767 (15)
C10.7464 (3)0.16940 (7)0.9327 (2)0.0370 (3)
H10.84110.14220.88850.044*
C20.5199 (2)0.15642 (6)0.92212 (18)0.0309 (3)
C30.4215 (2)0.20653 (7)1.0002 (2)0.0370 (3)
H30.26690.20591.00420.044*
C40.5714 (3)0.25511 (7)1.0683 (2)0.0392 (3)
H40.53510.29161.12550.047*
C50.3847 (2)0.09877 (7)0.83713 (19)0.0332 (3)
C60.5110 (2)0.04526 (7)0.79932 (19)0.0335 (3)
H60.67440.04660.82930.040*
C70.3911 (2)−0.00762 (7)0.71938 (19)0.0346 (3)
H70.2279−0.00530.69050.042*
O10.16866 (18)0.10012 (6)0.80304 (18)0.0481 (3)
N10.4754 (2)−0.06210 (6)0.67699 (18)0.0395 (3)
C80.7238 (3)−0.07201 (8)0.7171 (3)0.0482 (4)
H8A0.7873−0.04000.65450.072*
H8B0.7520−0.11420.67630.072*
H8C0.7986−0.06850.84730.072*
C90.3200 (3)−0.11355 (8)0.5873 (2)0.0472 (4)
H9A0.3317−0.14850.67230.071*
H9B0.3639−0.12850.48330.071*
H9C0.1607−0.09790.54660.071*

Source of material

The title compound of (E)-3-(dimethylamino)-1-(thiophen-3-yl)prop-2-en-1-one was prepared as previously described [5] via condensation of the 3-acetylthiophene and dimethylforamide dimethylacetal (DMF–DMA). 3-Acetylthiphene (10 mmol, 1.26 g) was dissolved in an excess amount of DMF–DMA (6 mL) and the reaction mixture was heated at 80 °C for 6 h. After the completion of the reaction (checked by TLC), the mixture was cooled to room temperature and was poured into distilled water (70 mL), which was extracted with methylene chloride (60 mL × 2). The combined organic layers were dried over MgSO4. Filtration and evaporation of the organic solvent gave a crude solid, which was recrystallized in methanol to afford crystals used in this X-ray diffraction study.

Experimental details

Data collections and reduction were carried out using the Bruker software APEX2 and SAINT including SADABS [1]. Hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

Comment

N,N-dimethylenamino (β-aminovinyl) ketones are versatile synthetic intermediates which provide access to various heterocyclic compounds with diverse biological properties in medicinal chemistry [68]. According to a recent review, the β-aminovinyl ketones possess both ‘enamine’ and ‘enone’ systems in the molecules [9]. Therefore they can react with nucleophiles as well as electrophiles to serve as scaffolds for fused heterocycles. As a continuation of our research program to expand the use of novel heterocyclic compounds [10, 11], we designed new β-aminovinyl ketone intermediate, which can be used to construct novel heterocyclic rings.

In the title compound, the whole molecule is slightly twisted and dihedral angles formed by thiophenyl ring system ([C1, C2, C3, C4, S1]; r.m.s. deviations 0.003 Å) with the central enone group ([C5, C6, C7, N1]; r.m.s. deviations 0.007 Å) is 15.33 (2)°. The double bond of C6=C7 bond in the central enone group adopts a trans configuration, which was defined by the dihedral angle of −179.09(1)° for C5–C6–C7–N1. In the crystal, pairs of weak C1–H1…O1 and C3–H3…S1 hydrogen bonds form a dimer.


Corresponding author: Dongsoo Koh, Department of Applied Chemistry, Dongduk Women’s University, Seoul136-714, Republic of Korea, E-mail:

Funding source: Basic Science Research Program

Award Identifier / Grant number: NRF-2019R1F1A1058747

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Basic Science Research Program (award No. NRF-2019R1F1A1058747).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2021-04-12
Accepted: 2021-04-22
Published Online: 2021-05-06
Published in Print: 2021-07-27

© 2021 Miri Yoo and Dongsoo Koh, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. Crystal structure of poly[(μ2-aqua-tetraaqua-(μ3-glutarato-κ4O,O′:O′:O′′)-(μ5-glutarato-κ6O:O,O′:O′:O′′:O′′′)distrontium(II)], C10H22O13Sr2
  4. The crystal structure of acetato-κ1O-{(2-(2-(2-aminophenoxy)ethoxy)phenyl)(4-oxo-4-phenylbut-2-en-2-yl)amido-κ2N,N′,O}copper(II), C26H26CuN2O5
  5. Crystal structure of dimethanolato-k2O:O-bis(1-((2-methyl-1H-benzo[d]imidazol-1-yl)methyl)-1H-benzo[d][1,2,3]triazole-κN)-bis(thiocyanato-κN)dicopper(II), C34H32Cu2N12O2S2
  6. Crystal structure of poly[diaqua-bis(μ2-3-(pyrimidin-5-yl)benzoato-κ2N:O)cobalt(II)] dihydrate, [Co(C11H11O2N2)2(H2O)2]
  7. Crystal structure of bis(3,3-dimethyl-1-phenylbut-1-en-2-yl)(trimethylsilyl)amido-k1N)zinc(II), Zn(C15H24NSi)2
  8. Crystal structure of catena-poly[(μ2-methanolato-κ2O:O)-(μ2-1-((2-methyl-1H-benzo[d]imidazol-1-yl)methyl)-1H-benzo[d][1,2,3]triazole-κ2N:N′)-(thiocyanato-κ1N)copper(II)] 0.25 hydrate, C17H16CuN6OS ⋅ 0.5H2O
  9. The crystal structure of 2-amino-5-nitroanilinium iodide monohydrate, C6H8IN3O2
  10. The crystal structure of 3-amino-5-carboxypyridin-1-ium perchlorate monohydrate, C6H9ClN2O7
  11. Crystal structure of 7-hydroxy-2,4-dimethoxy-9,10-dihydrophenanthrene from Arundina graminifolia, C16H16O3
  12. Crystal structure of 6,6′-((1E, 1′E)-(((1R, 2R)-1,2-diphenylethane-1,2-diyl) bis(azanylylidene))bis(methanylylidene))bis(2-ethylphenol), C32H32N2O2
  13. The crystal structure of 2-amino-5-carboxypyridin-1-ium iodide monohydrate, C6H9IN2O3
  14. The crystal structure of 2-(3,5-difluorophenyl)-2,3-dihydro-1H-naphtho[1,8-de][1,3,2]diazaborinine, C16H11BF2N2
  15. Crystal structure of bis{(2-pyridinyl)-1-phenyl-1-isopropylmethanolato-κ2N,O}nickel, C30H32N2NiO2
  16. Crystal structure of poly[(m3-3-carboxyadamantane-1-carboxylato-κ3O:O′:O″)-(phenanthroline-κ2N,N′)sodium(II)], C24H23N2NaO4
  17. Crystal structure of 2-phenylethynyl-1,3,6,8-tetramethylBOPHY (BOPHY = bis(difluoroboron)-1,2-bis((1H-pyrrol-2-yl)methylene)hydrazine), C22H20B2F4N4
  18. Crystal structure of 4-tert-butyl-2-N-(2-pyridylmethyl)aminophenol, C16H20N2O
  19. The crystal structure of (3Z,3′Z)-4,4′-((1,4-phenylenebis(methylene))bis(azanediyl))bis(pent-3-en-2-one), C18H24N2O2
  20. Crystal structure of (morpholine-1-carbodithioato-κ2-S,S′)bis(triphenylphosphine-κ-P)gold(I), C41H38AuNOP2S2
  21. Crystal structure of 1,4-bis(4-bromobenzyl)-4-(4-chlorophenyl)-1,4-dihydropyridine-3-carbonitrile, C26H19Br2ClN2
  22. The crystal structure of fac-tricarbonyl (N′-benzoyl-N,N-diphenylcarbamimidothioato-κ2S,O)-(pyrazole-κN)rhenium(I) — methanol (1/1) C26H23O4N4SRe
  23. The crystal structure of Ba2Mn(SeO3)2Cl2 containing 1[Mn(SeO3)2Cl2]4− chains
  24. Crystal structure of 3,3′,3″-((1E,1′E,1″E)-((nitrilotris(ethane-2,1-diyl))tris(azaneylylidene)) tris(methaneylylidene))tris(4-hydroxy-1-naphthaldehyde) monohydrate, C42H36N4O6·H2O
  25. The crystal structure of 4-(6-acetyl-5-methyl-4,7-dihydrotetrazolo[1,5-a]pyrimidin-7-yl)benzonitrile, C14H12N6O
  26. Crystal structure of benzo[d][1,3]dioxol-5-yl-2-(6-methoxynaphthalen-2-yl)propanoate, C21H18O5
  27. The crystal structure of ethyl 5-methyl-7-(4-(phenylthio)phenyl)-4,7-dihydrotetrazolo[1,5-a]pyrimidine-6-carboxylate, C20H19N5O2S
  28. Crystal structure of N′,N‴-((propane-2,2-diylbis(1H-pyrrole-5,2-diyl))bis(methaneylylidene))-di(isonicotinohydrazide)– water – dimethylformamide (1/4/2), C25H24N8O2·4H2O·2C3H7NO
  29. Synthesis and crystal structure of 4-(2,4-dinitrophenoxy)benzaldehyde, C13H8N2O6
  30. The crystal structure of 1-dodecylpyridin-1-ium bromide monohydrate, C17H32BrNO
  31. Crystal structure of (E)-amino(2-(4-(dimethylamino)benzylidene)hydrazineyl)methaniminium nitrate, C10H16N6O3
  32. Crystal structure of (E)-(2-((1H-pyrrol-2-yl)methylene)hydrazineyl)(amino)methaniminium nitrate monohydrate, C6H12N6O4
  33. The crystal structure of hexakis(1-propylimidazole-κ1N)copper(II) dichloride, C36H60Cl2CuN12
  34. The crystal structure of bis{(μ2-3,3-dimethyl-1-phenylbut-1-en-2-yl)((dimethylamino)dimethylsilyl)amido-κ3N,N′:N′}dilithium, C32H54Li2N4Si2
  35. The crystal structure of methyl 4-(1H-naphtho[1,8-de][1,3,2]diazaborinin-2(3H)-yl)benzoate, C18H15BN2O2
  36. Crystal structure of (E)-N-(1-((2-chlorothiazol-5-yl)methyl)pyridin-2(1H)-ylidene)-2,2,2-trifluoroacetamide, C11H7ClF3N3OS
  37. Crystal structure of N′, N‴-((propane-2,2-diylbis(1H-pyrrole-5,2-diyl))bis (methaneylylidene))di(picolinohydrazide) – water – methanol (1/1/1), C25H24N8O2·H2O·CH3OH
  38. Crystal structure of 3-(2-chloro-benzyl)-7-[4-(2-chloro-benzyl)-piperazin-1-yl]-5,6,8-trifluoro-3H-quinazolin-4-one, C26H21Cl2F3N4O
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  49. Crystal structure of diaqua-bis(2,4-dinitrophenolato-κ2O,O′)copper(II) 1.5 hydrate, C12H13CuN4O13.5
  50. Crystal structure of N′,N‴-((1E,1′E)-((decane-1,10-diylbis(oxy))bis(2,1-phenylene)) bis(methaneylylidene))di(isonicotinohydrazide), C36H40N6O4
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  52. Synthesis and crystal structure of (1E,2E)-3-(anthracen-9-yl)-1-(4-methoxyphenyl)prop-2-en-1-one oxime, C24H19NO2
  53. Synthesis and crystal structure of (2E,2′E)-3,3′-(1,3-phenylene)bis(1-(3-bromophenyl)prop-2-en-1-one), C24H16Br2O2
  54. The crystal structure of catena-poly[bis(µ2-1,2-bis((1H-imidazol-1-yl)methyl)benzene- κ2N:N′)-bis(nitrato-κO)copper(II)], C28H28N10O6Cu
  55. Synthesis and crystal structure of the novel chiral acetyl-3-thiophene-5-(9-anthryl)-2-pyrazoline, C23H18N2OS
  56. Crystal structure of (E)-3-(dimethylamino)-1-(thiophen-3-yl)prop-2-en-1-one, C9H11NOS
  57. Crystal structure of catena-poly[aqua-(4-iodopyridine-2,6-dicarboxylato-κ3N,O,O′)-(μ2-4-amino-4H-1,2,4-triazole-κ2N:N′) copper(II)], C9H8N5O5CuI
  58. Crystal structure of cyclopropane-1,2,3-triyltris(phenylmethanone), C24H18O3
  59. Crystal structure of bis(amino(thioureido)methaniminium) terephthalate, C12H18N8O4S2
  60. A three-dimensional Eu(III) framework in the crystal structure of dimethylaminium poly[dimethylformamide-κ1N)bis(μ4-terephthalato-κ4O:O′:O′′:O′′′)europium(III)] monohydrate, C21H25EuN2O10
  61. Crystal structure of 2-methoxyphenyl 2-(6-methoxynaphthalen-2-yl)propanoate, C21H20O4
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