Home Physical Sciences Crystal structure of poly[diaqua-(μ2-5-isopropoxyisophthalato-κ2O:O′)-(μ2-(1,3-bis(3,5-di(1H-imidazol-1-yl)pyridine))-κ2N:N′)cobalt(II)] monohydrate, C22H25N5O8Co
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Crystal structure of poly[diaqua-(μ2-5-isopropoxyisophthalato-κ2O:O′)-(μ2-(1,3-bis(3,5-di(1H-imidazol-1-yl)pyridine))-κ2N:N′)cobalt(II)] monohydrate, C22H25N5O8Co

  • Ying Zhao ORCID logo EMAIL logo
Published/Copyright: June 18, 2020

Abstract

C22H25N5O8Co, monoclinic, P21/c (no. 2), a = 7.8425(3) Å, b = 18.1807(10) Å, c = 17.0436(7) Å, β = 95.133(3)°, V = 2420.37(19) Å3, Z = 4, Rgt(F) = 0.0538, wRref(F2) = 0.1069, T = 293.18(10) K.

CCDC no.: 2004288

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Pink block
Size:0.29 × 0.18 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.77 mm−1
Diffractometer, scan mode:SuperNova, ω
θmax, completeness:25.3°, >99%
N(hkl)measured, N(hkl)unique, Rint:9756, 4422, 0.044
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3232
N(param)refined:330
Programs:CrysAlisPRO [1], SHELX [2], OLEX2 [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Co10.45972(5)0.12833(3)0.58365(2)0.01694(15)
O10.3150(3)0.15778(14)0.67413(13)0.0251(6)
O20.1123(3)0.07145(15)0.67183(14)0.0352(7)
O30.4188(3)0.32259(16)0.89436(14)0.0387(7)
O40.3248(3)0.29377(14)1.00978(12)0.0250(6)
O5−0.1621(4)0.1237(2)0.93030(18)0.0728(12)
O60.2719(3)0.04913(13)0.54234(12)0.0244(6)
H6a0.3135(3)0.00790(13)0.53264(12)0.0366(9)*
H6b0.2063(3)0.04084(13)0.57842(12)0.0366(9)*
O70.6022(3)0.09301(13)0.48608(12)0.0251(6)
H7a0.5445(3)0.11900(13)0.45514(12)0.0376(9)*
H7b0.7009(3)0.11268(13)0.49061(12)0.0376(9)*
N10.6454(3)0.20874(17)0.61796(16)0.0252(7)
N20.7983(3)0.29048(18)0.68969(16)0.0274(8)
N30.8642(3)0.36497(18)0.89065(16)0.0300(8)
N41.2312(3)0.45518(17)0.81277(15)0.0216(7)
N51.4164(3)0.54389(17)0.84560(16)0.0234(7)
C10.1468(4)0.1524(2)0.7820(2)0.0235(9)
C20.2456(4)0.2062(2)0.82025(18)0.0222(8)
H20.3343(4)0.2276(2)0.79557(18)0.0266(10)*
C30.2140(4)0.2289(2)0.89552(19)0.0201(8)
C40.0784(4)0.1987(2)0.9304(2)0.0313(10)
H40.0563(4)0.2135(2)0.9807(2)0.0376(12)*
C5−0.0255(5)0.1461(2)0.8906(2)0.0379(11)
C60.0103(4)0.1216(2)0.8169(2)0.0330(10)
H6−0.0562(4)0.0851(2)0.7911(2)0.0396(12)*
C70.1923(4)0.1247(2)0.70269(19)0.0220(8)
C80.3276(4)0.2861(2)0.9366(2)0.0215(8)
C9−0.2727(5)0.0669(3)0.8991(3)0.0511(13)
H9−0.2834(5)0.0694(3)0.8414(3)0.0613(16)*
C10−0.2007(7)−0.0050(3)0.9249(4)0.101(2)
H10a−0.0849(19)−0.0086(10)0.911(2)0.151(3)*
H10b−0.202(5)−0.0095(10)0.9809(5)0.151(3)*
H10c−0.268(3)−0.0436(3)0.8993(19)0.151(3)*
C11−0.4430(6)0.0817(4)0.9292(3)0.092(2)
H11a−0.4332(13)0.077(2)0.9856(4)0.138(3)*
H11b−0.480(2)0.1306(8)0.915(2)0.138(3)*
H11c−0.5254(13)0.0468(14)0.9067(19)0.138(3)*
C130.7166(5)0.2577(2)0.5692(2)0.0428(12)
H130.7023(5)0.2562(2)0.5145(2)0.0513(14)*
C140.8102(5)0.3082(3)0.6117(2)0.0475(12)
H140.8707(5)0.3472(3)0.5923(2)0.0570(15)*
C150.6955(4)0.2313(2)0.6894(2)0.0271(9)
H150.6634(4)0.2088(2)0.7348(2)0.0326(11)*
C160.7979(4)0.3296(2)0.8264(2)0.0288(9)
H160.6971(4)0.3031(2)0.8292(2)0.0345(11)*
C170.8726(4)0.3306(2)0.75616(19)0.0220(8)
C181.0193(4)0.3718(2)0.7505(2)0.0251(9)
H181.0723(4)0.3734(2)0.7038(2)0.0302(10)*
C191.0838(4)0.4099(2)0.8154(2)0.0213(8)
C201.0067(4)0.4036(2)0.8851(2)0.0273(9)
H201.0565(4)0.4273(2)0.9297(2)0.0327(11)*
C211.2645(4)0.5168(2)0.85533(19)0.0238(9)
H211.1886(4)0.5377(2)0.88785(19)0.0285(10)*
C221.3737(4)0.4418(2)0.7725(2)0.0297(9)
H221.3895(4)0.4030(2)0.7383(2)0.0357(11)*
C231.4845(4)0.4964(2)0.7932(2)0.0278(9)
H231.5920(4)0.5014(2)0.7749(2)0.0334(11)*
O80.2895(5)0.31227(17)0.63523(18)0.0568(9)
H8a0.301(6)0.2717(12)0.660(2)0.0852(13)*
H8b0.298(6)0.301(2)0.5874(7)0.0852(13)*

Source of material

A mixture of 5-i-propoxyisophthalate (22.4 mg, 0.1 mmol), Co(OAc)2⋅4H2O (24.5 mg, 0.1 mmol), and 3,5-di(1H-imidazol-1-yl)pyridine (25.1 mg, 0.1 mmol) were added to water (10 mL) in a 25 mL Teflon-lined autoclave. The mixture was heated at 413 K for 3 days and then slowly cooled to room temperature. Pink block crystals of the title compound were obtained.

Experimental details

Hydrogen atoms were placed in calculated positions and refined using a riding model on attached atoms.

Comment

Metal-organic frameworks (MOFs) have attracted considerable attention due to their structural diversity and intriguing topologies as well as a wide variety of potential applications [4], [5], [6], [7], [8]. Isophthalate and its derivatives have been extensively used in the preparation of new MOFs [9], [10], [11]. N-donor ligands also have attracted increasing attention in assembly processes. Until now, a great number of MOFs based on bis(imidazole) derivatives have been reported by several groups [12], [13], [14].

The asymmetric unit contains besides the Co(II), one 5-i-propoxyisophthalate, one 3,5-di(1H-imidazol-1-yl)pyridine, two coordinated water molecules and one free water (See Figure). Co1 is 6-coordinated with a distorted octahedral environment. The Co—N bond lengths are 2.109(3) and 2.132(3) Å and the Co—O bond lengths are in the range 2.066(2)–2.174(2) Å, respectively. The six atoms coordinated to each Co(II) ion come from two carboxylate oxygen atoms from two 5-i-propoxyisophthalate ligands, two water molecules and two nitrogen atoms from two 3,5-di(1H-imidazol-1-yl)pyridine ligands. Every 5-i-propoxyisophthalate ligand adopts a bis-monodentate bridging mode and links neighboring Co(II) ions, resulting in a 1D chain. The 1D chains are further connected by 3,5-di(1H-imidazol-1-yl)pyridine to give a puckered 2D sheet [15], [16]. The adjacent layers are further held together by O—H⋯O hydrogen bonding interactions, generating a network structure. A comparison of the title structure with that of poly[diaqua-bis(thiophene-2,5-dicarboxylate)(3,5-di(1H-imidazol-1-yl)pyridine)cobalt(II)] constructed from thiophene-2,5-dicarboxylate and 3,5-di(1H-imidazol-1-yl)pyridine is of interest [15]. In 2, 3,5-di(1H-imidazol-1-yl)pyridine ligands and thiophene-2,5-dicarboxylate anions coordinate to cobalt ions to give rise to a one-dimensional double chain. This difference between two complexes is possible ascribed to the effects of different carboxylate ligands.

Acknowledgements

This work was supported financially by the Key Scientific Research Projects of Higher Education of Henan province (No. 19A150034).

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Received: 2020-03-10
Accepted: 2020-05-17
Published Online: 2020-06-18
Published in Print: 2020-08-26

©2020 Ying Zhao, published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  49. Synthesis and crystal structure of ((6R,7S)-3-ethyl-6-phenyl-6,7-dihydro-5H-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazin-7-yl)(phenyl)methanone hemihydrate, 2(C19H18N4OS) ⋅ H2O
  50. Crystal structure of 2-(5-(pyridin-3-yl)-4-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl)pyridine, C17H12N6
  51. The crystal structure of N-((1E,2E)-1,3-bis(4-fluorophenyl)but-2-en-1-ylidene)-4-methylbenzenesulfonamide, C23H19F2NO2S
  52. Crystal structure of diacetato-κ1O-diethanol-κ1O-bis(μ2-2-(((2-hydroxyethyl)imino)methyl)-5-methoxyphenolato-κ4O,N,O′:O′′)dinickel(II), C28H42Ni2N2O12
  53. The crystal structure of catena-poly[chlorido-(μ2-1,4-bis(pyridin-3-yl-methoxy)benzene-κ2N:N′)copper(II)], C18H16ClN2O2Cu
  54. N′,N′′′-(((ethane-1,2-diylbis(oxy))bis(2,1-phenylene))bis(methaneylylidene))bis(2-hydroxybenzohydrazide)nickel(II), C30H24N4NiO6
  55. Crystal structure of (E)-3′,6′-bis(ethylamino)-2′,7′-dimethyl-2-(2-((quinolin-2-ylmethylene)amino)ethyl)spiro[isoindoline-1,9′-xanthen]-3-one, C38H37N5O2
  56. Crystal structure of 4,4′-di(1H-imidazol-1-yl)-1,1′-biphenyl-1-ium 5,3′,5′-tricarboxy-[1,10-biphenyl]-2-carboxylate, C25H17N2O8
  57. The crystal structure of 1-carboxy-2-(1H-indol-3-yl)-N,N,N-trimethylethan-1-ammonium chloride, C14H19N2O2Cl
  58. The crystal structure of 5-bromo-2-fluoronicotinic acid monohydrate, C6H5BrFNO3
  59. Crystal structure of ethyl 3-(trifluoromethyl)-1H-pyrazole-4-carboxylate, C7H7F3N2O2
  60. Crystal structure of tetrakis(1H-benzo[d]imidazol-3-ium) bis(μ5-phenylphosphonato)-pentakis(μ2-oxido)-decaoxo-penta-molybdenum dihydrate, C40H42Mo5N8O23P2
  61. Structure of 7-(3,3,4,4,5,5-hexafluoro-2-(2-methylbenzo[b]thiophen-3-yl)cyclopent-1-en-1-yl)-8-methylquinoline, C24H15F6NS
  62. Crystal structure of monocarbonyl[2-((cyclopentylmethylene)amino)-5-methylphenolato-κ2N,O] (tricyclohexylphosphine)rhodium(I), C32H48NO2PRh
  63. The crystal structure of fac-tricarbonyl(1,10-phenanthroline-κ2N,N′)-(pyrazole-κN)rhenium(I)nitrate, C18H12O3N4Re
  64. Crystal structure of poly[diaqua-bis(μ2-4-(3-(pyridin-3-yl)-1H-1,2,4-triazol-5-yl)benzoato-κ2N:O)nickel(II)], C28H22O6N8Ni
  65. Crystal structure of 4,4′-bis(pyridin-1-ium-4-yl)biphenyl poly[bis(μ2-4,4′-bis(pyrid-4-yl)biphenyl-K2N:N′)-tetrakis(μ4-4′-methyl-[1,1′-biphenyl]-3,5-dicarboxylato-K4O,O′:O′′:O′′′)-bis[[μ2-1,1′-biphenyl]-3-carboxyl-5-carboxylato-K2O:O′]tetracobalt(II)]— [1,1′-biphenyl]-3,5-dicarboxylic acid (1/2), C93H68N3O16Co2
  66. The crystal structure of 4a-formyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydro-1-2-6a,6b,9,9,12a-heptamethylpicen-10-yl acetate, C32H50O3
  67. Crystal structure of 3,3′-(1,2-phenylenebis(methylene))bis(1-methyl-1H-imidazol-3-ium) bis(hexafluoridophosphate), C16H20F12N4P2
  68. Crystal structure of catena-poly[diaqua-(μ2-tartrato-κ4O,O′:O′′,O′′′)zinc(II)], C4H8O8Zn
  69. The crystal structure of (6aR,6bS,8aS,8bR,9S,11aS,12aS,12bS)-10-(4-acetoxy-3-methylbutyl)-6a,8a,9-trimethyl-3,4,5,6,6a,6b,7,8,8a,8b,9,10,11a,12,12a,12b-hexadecahydro-1H-naphtho[2′,1′:4,5]indeno[2,1-b]furan-4-yl acetate, C31H48O5
  70. Crystal structure of 4,4′-(oxybis(methylene))bis(bromobenzene), C14H12Br2O
  71. Crystal structure of (N,N-dimethylsulphoxide)-[N-(3-ethoxy-2-(oxide)benzylidene)-3-methoxybenzenecarbohydrazonato-κ3N,O,O′]-dioxo-molybdenum(VI), C19H22MoN2O7S
  72. Crystal structure of dichlorido-bis(dimethyl sulphoxide-κO)-bis(4-methylbenzyl-κC1)tin(IV), C20H30Cl2O2S2Sn
  73. Crystal structure of (E)-2-amino-N′-(2-hydroxy-4-(2-(piperidin-1-yl)ethoxy)benzylidene)benzohydrazide monohydrate, C21H26N4O3 ⋅ H2O
  74. Crystal structure of chloridotris(4-chlorophenyl)(dimethyl sulfoxide-κO)tin(IV), C20H18Cl4OSSn
  75. Crystal structure of catena{di-aqua-sodium-[N-(hydroxyethyl), N-isopropyl-dithiocarbamato]}n, [C6H16NNaO2S2]n
  76. Crystal structure of 2,2,4,4,6,6-hexakis(4-chlorophenyl)-1,3,5,2,4,6-trithiatristanninane, C36H24Cl6S3Sn3
  77. Crystal structure of 6-methoxy-3-(5-(3-methoxyphenyl)-1,3,4-oxadiazol-2-yl)-4H-chromen-4-one-methanol (1/1), C20H18N2O6
  78. Crystal structure of hexanedihydrazide, C6H14N4O2
  79. Crystal structure of tert-butyl 2-(hydroxymethyl)-5-{4-[(methoxycarbonyl)amino]phenyl}-2,5-dihydro-1H-pyrrole-1-carboxylate, C18H24N2O5
  80. Crystal structure of [(Z)-O-isopropyl N-(4-nitrophenyl)thiocarbamato-κS]-(triphenylphosphine-κP)-gold(I), C28H26AuN2O3PS
  81. Crystal structure of [O-ethyl N-(4-nitrophenyl)thiocarbamato-κS](tri-4-tolylphosphine-κP)gold(I) tetrahydrofuran solvate, C30H30AuN2O3PS, C4H8O
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