Home Physical Sciences Crystal structure of dodecaaqua-bis(μ2-4,4′-bipyridine-κ2N:N′)-bis(4,4′-((5-carboxylato-1,3-phenylene)bis(oxy))dibenzoato-κ1O)tricopper(II) - water (1/4), C62H70Cu3N4O32
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Crystal structure of dodecaaqua-bis(μ2-4,4′-bipyridine-κ2N:N′)-bis(4,4′-((5-carboxylato-1,3-phenylene)bis(oxy))dibenzoato-κ1O)tricopper(II) - water (1/4), C62H70Cu3N4O32

  • Peng Deng , Da Li , Yan Zhou EMAIL logo , Zhi-Hong Ling and Yue-Ming Li
Published/Copyright: February 4, 2019

Abstract

C62H70Cu3N4O32, monoclinic, C2/c (no. 15), a = 44.710(7) Å, b = 12.8847(17) Å, c = 11.9901(18) Å, β = 102.286(13)°, V = 6749.0(17) Å3, Z = 4, Rgt(F) = 0.0618, wRref(F2) = 0.1978, T = 293(2) K.

CCDC no.: 1890954

The crystal structure is shown in the figure (the asymmetric unit is labelled). Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Green block
Size:0.32 × 0.28 × 0.26 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.03 mm−1
Diffractometer, scan mode:Xcalibur, Eos, ω
θmax, completeness:26.4°, >99%
N(hkl)measured, N(hkl)unique, Rint:19105, 6864, 0.068
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 3826
N(param)refined:477
Programs:CrysAlisPRO [1], SHELX [2], Olex2 [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cu10.2500000.2500000.0000000.0237(2)
Cu20.50082(2)0.25034(4)−0.00355(5)0.0274(2)
O10.24778(6)0.4108(2)−0.0139(3)0.0300(8)
H1A0.2331710.4360300.0165070.045*
H1B0.2642540.4392250.0277480.045*
O20.26261(7)0.2670(2)0.1747(3)0.0297(8)
O30.25765(8)0.1052(3)0.2316(3)0.0441(9)
O40.44122(8)0.5210(3)0.8109(3)0.0545(11)
O50.41630(8)0.5925(3)0.9321(3)0.0565(12)
O60.44125(8)−0.0056(3)0.8260(3)0.0484(11)
O70.42016(7)−0.0737(3)0.9592(3)0.0476(10)
O80.29975(6)0.1040(3)0.6501(3)0.0331(8)
O90.30318(7)0.4606(3)0.5412(3)0.0363(8)
O110.50908(8)0.1362(3)0.1169(4)0.0570(12)
H11A0.5114000.1629640.1839980.085*
H11B0.5265580.1081860.1171260.085*
O120.50884(8)0.3623(3)0.1174(4)0.0657(14)
H12A0.4952550.4125490.1024010.099*
H12B0.5260840.3947020.1163880.099*
O130.54603(7)0.2484(2)−0.0132(3)0.0384(9)
H13A0.5549790.1918750.0168590.058*
H13B0.5560160.2972320.0292570.058*
O140.49416(9)0.3594(4)−0.1306(4)0.0872(18)
H14A0.4830050.335144−0.1953150.131*
H14B0.4828100.411322−0.1146500.131*
O150.49098(8)0.1415(4)−0.1312(4)0.0730(15)
H15A0.5066300.100884−0.1283290.110*
H15B0.4767260.099095−0.1202480.110*
N10.29670(8)0.2498(3)−0.0035(3)0.0220(8)
N20.45494(8)0.2536(3)0.0028(3)0.0246(9)
C10.44516(10)0.2458(3)0.1011(4)0.0288(11)
H10.4596060.2399020.1691760.035*
C20.41506(11)0.2461(4)0.1047(4)0.0328(12)
H20.4092390.2404120.1744620.039*
C30.39281(10)0.2548(3)0.0042(4)0.0295(11)
C40.40296(11)0.2648(4)−0.0947(4)0.0357(13)
H40.3889530.272460−0.1636670.043*
C50.43369(11)0.2637(4)−0.0932(4)0.0328(12)
H50.4399950.270214−0.1619080.039*
C60.35952(10)0.2535(3)0.0019(4)0.0279(11)
C70.34724(10)0.1902(4)0.0750(4)0.0383(13)
H70.3600250.1483810.1278540.046*
C80.31635(10)0.1896(4)0.0689(4)0.0347(12)
H80.3085930.1453140.1170840.042*
C90.30864(10)0.3106(4)−0.0725(4)0.0301(11)
H90.2954960.352487−0.1241010.036*
C100.33930(10)0.3145(4)−0.0715(4)0.0298(11)
H100.3464300.358960−0.1210880.036*
C110.41661(12)0.5497(4)0.8410(5)0.0418(14)
C120.38682(11)0.5261(4)0.7596(4)0.0338(12)
C130.38516(11)0.4562(4)0.6716(5)0.0377(13)
H130.4029550.4242910.6604460.045*
C140.35778(11)0.4327(4)0.6002(5)0.0396(13)
H140.3571240.3847510.5417590.047*
C150.33126(11)0.4800(4)0.6146(4)0.0307(12)
C160.33213(11)0.5533(4)0.6975(4)0.0378(12)
H160.3144440.5883650.7046450.045*
C170.36019(12)0.5747(4)0.7718(5)0.0434(14)
H170.3608590.6225430.8303720.052*
C180.41813(11)−0.0265(4)0.8684(4)0.0327(12)
C190.38722(11)0.0087(4)0.8056(4)0.0290(11)
C200.36206(11)−0.0131(4)0.8502(5)0.0379(13)
H200.364665−0.0510570.9175590.046*
C210.33324(11)0.0192(4)0.7986(5)0.0379(13)
H210.3165600.0024610.8300520.046*
C220.32917(10)0.0770(4)0.6989(4)0.0281(11)
C230.35426(10)0.1010(4)0.6526(4)0.0323(12)
H230.3517970.1403590.5862600.039*
C240.38291(10)0.0659(4)0.7059(4)0.0325(12)
H240.3996490.0809650.6741230.039*
C250.26435(9)0.1979(4)0.2499(4)0.0279(11)
C260.27729(9)0.2298(4)0.3722(4)0.0248(11)
C270.28405(9)0.3330(4)0.4021(4)0.0256(10)
H270.2799280.3850930.3473580.031*
C280.29670(9)0.3562(4)0.5121(4)0.0262(10)
C290.30222(10)0.2816(4)0.5980(4)0.0277(11)
H290.3102410.2994540.6735740.033*
C300.29530(9)0.1805(4)0.5661(4)0.0276(11)
C310.28263(9)0.1535(4)0.4558(4)0.0250(10)
H310.2776480.0846760.4369820.030*
O100.46375(8)0.0021(3)0.6339(3)0.0414(9)
H10A0.4489250.0108430.5770360.062*
H10B0.4541(11)0.005(4)0.687(3)0.037(16)*
O160.46051(8)0.4990(3)0.6132(4)0.0416(9)
H16A0.4492880.4765970.5516680.062*
H16B0.4509(12)0.508(4)0.666(4)0.050(19)*

Source of material

Cu(NO3)⋅3H2O (0.048 g, 0.2 mmol), 4,4′-[(5-carboxy-1,3-phenylene)-bis(oxy)]dibenzoic acid (H3L, 0.0394 g, 0.1 mmol), and 4,4′-bipyridine (bpy, 0.0156 g, 0.1 mmol) were mixed in 10 mL aqueous solution, and the pH value was adjusted to 5.5 with a sodium hydroxide solution (1 M). After stirring the mixture for 30 min at room temperature, the resulting mixture was transferred and sealed in a 25 mL Teflon-lined stainless steel vessel, which was sealed and heated at 140 °C for 48 h. Green block crystals of the title compound obtained after cooling the vessel to room temperature. The yield was 56% based on the H3L ligand.

Experimental details

H atoms bonded to C atoms from organic ligands were positioned geometrically and refined using a riding model, with C—H = 0.93 Å, with Uiso(H) = 1.2 times Ueq(C).

Comment

The multicarboxylic acid/ carboxylate and N-donor bipyridine ligands are two most widely used kinds of linkers in the construction of coordination polymers [4], [5]. Polycarboxyl (ate) ligands may take the anionic or protonated form to provide various coordination modes upon binding to metals. On the one hand, the neutral bipyridine ligands normally bind to the metal ions as the rod-like bidentate tectons. The recently reported studies show that the combination of multicarboxylic acid and N-donor co-ligands is a good choice for building CPs with high porosity and interesting structural diversity [6], and some of them even show promising cytotoxicity toward the human lung cancer cell lines [7]. However, the formation of coordination polymers is highly influenced by many factors such as temperature and solvents [8].

The asymmetric unit of the title structure is composed of one and a half Cu(II) ion, one L3– anion, one bpy ligand, six coordinated water molecules, and two lattice water molecules (cf. the figure). Cu1 ion, sitting on the 2-fold axis, is six-coordinated with two pyridyl N atoms, two carboxylato O atoms and two aqua ligands, resulting in a [CuN2O4] distorted octahedral geometry. Cu2 ion reveals a similar coordination environment with Cu1, which is shaped by one pyridyl N atom and five coordinated water molecules. Although this compound is isostructural to the Ni(II) and Co(II)-compound, respectively, it has different lattice water arrangements which gives rise to different H-bonding interactions. Both water molecules form H-bonding interactions with two adjacent carboxylate groups (cf. the figure) and one neighboring coordinated water while this was not the case for the Ni(II) and Co(II)-based compounds, indicating the different synthesis might result in different lattice guest agreement [9]. The title complex is further assembled into a 3D supramolecular framework by the hydrogen bond interactions.

References

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Received: 2018-11-08
Accepted: 2019-01-15
Published Online: 2019-02-04
Published in Print: 2019-03-26

©2019 Peng Deng et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  60. Crystal structure of 5-(5-(4-chlorophenyl)-1-phenyl-1H-pyrazol-3-yl)-N-phenyl-2-amine, C23H16ClN5O
  61. Crystal structure of poly-[(μ2(carboxylatomethyl)((3-nitrophenyl)sulfonyl)amido-κ3N: O:O′)(μ2-4,4′-bipyridine-κ2N:N′)copper(II)], C18H14CuN4O6S
  62. Crystal structure of poly-[(μ2-(carboxylatomethyl)((3-nitrophenyl)sulfonyl)amido-κ3N:O:O′)(μ2-4,4′-bipyridine-κ2N:N′) nickel(II)], C18H14NiN4O6S
  63. Crystal structure of N-((3R,10S,13S,17S)-17-((S)-1-(dimethylamino)ethyl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-3-yl)-N-methylbenzamide, C31H48N2O
  64. The crystal structure of dichloroido(1,3-bis(2,6-dimethyl-phenyl)-1H-3l4-imidazol-2-yl)(2-methyl-4,5-dihydrooxazol-κN)palladium(IV)-water (1/1), C23H29Cl2N3O2Pd
  65. Crystal structure of catena-poly[dibromido-{μ2-1,5-dimethyl-2-phenyl-4-((pyridin-4-ylmethylene)amino)-1,2-dihydro-3H-pyrazol-3-one-κ2N:O}zinc(II)], C34H32Br4N8O2Zn2
  66. Crystal structure of diaqua-dichlorido-bis(μ2-2-(((1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)imino)methyl)phenolato-κ4O:O,N,O′)dicobalt(II), C36H36Cl2N6O6Co2
  67. Crystal structure of catena-poly[diaqua-(μ2-1,2-bis(4-pyridinyl)ethyane-κ2N:N′)-(μ2–pyridazine-4,5-dicarboxylato-κ2O:O′)]dizinc(II) dihydrate, C12H12ZnN3O6
  68. The crystal structure of 2-(4-chloro-2,6-dinitrophenyl)-1-(4-chloro)diazene oxide, C12H6Cl2N4O5
  69. Crystal structure of 2-isopropylthioxanthone, C16H14OS
  70. Crystal structure of methyl 2-(4-(3-(1-methyl-1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-6-yl)phenyl)acetate, C19H17N5O2
  71. Crystal structure of 4,4-dimethyl-2-(trifluoromethyl)-4,5-dihydro-1H-imidazole, C6H9F3N2
  72. Crystal structure of N-methylanilinium 5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonate monohydrate, C22H21NO8S
  73. Crystal structure of methyl 4-acetoxybenzoate, C10H10O4
  74. Crystal structure of catena-poly[(bis(μ-1,1′-[(5-methoxy-2,4,6-trimethyl-1,3-phenylene)bis(methylene)]bis(1H-1,2,4-triazole)-κ2N:N′)-bis(isothiocyanato-κN)manganese(II)], C34H40MnN14O2S2
  75. Crystal structure of N-(2-methylphenyl)(propan-2-yloxy)carbothioamide, C11H15NOS
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