Home Physical Sciences Crystal structure of (1,4-diazepane)4CuII2(μ-Cl)10CuI6, C20H48Cl10Cu8N8
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Crystal structure of (1,4-diazepane)4CuII2(μ-Cl)10CuI6, C20H48Cl10Cu8N8

  • Zheng Xing EMAIL logo and Heng-Bo Yin
Published/Copyright: January 12, 2019

Abstract

C20H48Cl10Cu8N8, orthorhombic, Cmce (no. 64), a = 16.477(10) Å, b = 10.008(6) Å, c = 24.201(15) Å, V = 3991(4) Å3, Z = 4, Rgt(F) = 0.0364, wRref(F2) = 0.0798, T = 296(2) K.

CCDC no.: 1533505

The molecular crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Source of material

The title compound is easily available by a literature known synthesis [5]. The mixtures of CuCl (1 mmol, 0.1 g), 1,4-diazepane (0.5 mmol, 0.05 g), ethanol (1 mL) and water (0.2 mL) were placed in a thick Pyrex tube (ca 20 cm in length). The Pyrex tube was frozen with liquid N2, evacuated under vacuum and sealed with a torch. The tube was heated at 70 °C for 3 days. After being cooled slowly to room temperature, purple block crystals of the title compound were obtained.

Table 1:

Crystal collection and handling.

Crystal:Block, purple
Size:0.20 × 0.18 × 0.16 mm
Wavelength:Mo Kα radiation (λ = 0.71073 Å)
μ:4.87 mm−1
Diffractometer, scan mode:APEX2, Φ and ω-scans
θmax, completeness:27.5°, 97%
N(hkl)measured, N(hkl)unique, Rint:8599, 2291, 0.0355
Criterion for Iobs, N(hkl)gt:Iobs > 2σ(Iobs), 1691
N(param)refined:111
Programs:Bruker programs [1], SHELX [2], OLEX2 [3], DIAMOND [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Cu11.00000.07143(6)0.34162(2)0.02823(15)
Cu21.00000.07820(8)0.17281(3)0.0519(2)
Cu30.90466(3)0.11646(5)0.05148(2)0.05576(18)
Cl11.0000−0.06713(14)0.24680(5)0.0416(3)
Cl20.87703(6)0.13308(11)0.14429(4)0.0449(2)
Cl31.00000.25828(15)0.02218(6)0.0500(4)
Cl40.82003(9)0.00000.00000.0576(4)
N10.90729(17)0.1978(3)0.32823(13)0.0391(8)
H10.92460.26860.30280.047
N20.90424(16)−0.0313(3)0.37094(11)0.0335(7)
H20.9190−0.12540.37600.040
C10.8818(2)0.2583(4)0.38174(17)0.0456(10)
H1A0.84620.33350.37450.055
H1B0.92930.29180.40090.055
C20.8425(2)0.1188(4)0.30237(16)0.0476(11)
H2A0.85290.11010.26310.057
H2B0.79080.16360.30720.057
C30.8394(2)−0.0197(4)0.32905(16)0.0457(10)
H3A0.7869−0.03310.34630.055
H3B0.8465−0.08790.30100.055
C40.8791(2)0.0274(4)0.42477(15)0.0405(9)
H4A0.92660.03780.44810.049
H4B0.8422−0.03360.44310.049
C50.8385(2)0.1601(4)0.41824(16)0.0423(9)
H5A0.83230.19980.45460.051
H5B0.78460.14550.40340.051

Experimental details

Hydrogen atoms were positioned using the standard options of the SHELX system.

Discussion

Heterocyclic N atoms can bind metal centers and halogen anions may coordinate in a bridging mode, forming different MOFs with novel stereostructures and useful properties [6]. Two new 3-D MOFs [Cu4I4(hpip)2] and [Cu4I4(bpp)2] were prepared from two new organic bridging-type ligands homopiperazine (hpip) and 1,3-bis(4-piperidyl)propane (bpp) which are extended into different topologies based on the cubane Cu4I4 clusters as the connecting nodes [7]. Based on homopiperazine, a series of new lipophilic platinum(II) complexes of [Pt(hpip)L2 and [Pt(hpip)L] were synthesized and characterized. Single crystal X-ray diffraction showed that the hpip molecule was in a boat conformation and formed five- and six-member chelating rings with platinum [8]. It is notable that delocalized mixed-valence Cu2 center play an important part in metallo protein systems because they involve long-distances electron, and the Cu—Cu bond of the Cu2 core represents the first –metal-metal bond in biology. Hydroxylation of bpy and phen ligands in two delocalized mixed-valence Cu(I)/Cu(II) represents a new route to the stable mixed-valence dicopper complexes [9], [10], [11], [12], [13], [14].

For the title compound, X-ray single crystal structure determination reveals that copper atoms have two different coordination environments in its crystal structure, presenting a mixed-valence Cu(I/II) complex. Cu1(II) is coordinated in distorted tetrahedral geometry, which is defined by four N atoms from two homopiperazine ligand. Cu2(I) and Cu3(I) are linked with three Cl atoms separately. At the same time, each Cl atom acts as linker to bridge two Cu atoms, presenting six-member cycle configuration [15]. The Cu—Cl bond lengths in the complex range from 2.204(1) Å to 2.681(1) Å. The Cu—N bond lengths are 2.010(1) Å and 2.013(1) Å for Cu1—N1 and Cu1—N2, respectively. The structure of the compound extends into two-dimensional framework through hydrogen bonds.

Acknowledgements

This work was supported by Funds of Zhenjiang College scientific research team (zjckytd2017011).

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Received: 2018-06-07
Accepted: 2018-10-04
Published Online: 2019-01-12
Published in Print: 2019-03-26

©2019 Zheng Xing et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

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  66. Crystal structure of diaqua-dichlorido-bis(μ2-2-(((1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)imino)methyl)phenolato-κ4O:O,N,O′)dicobalt(II), C36H36Cl2N6O6Co2
  67. Crystal structure of catena-poly[diaqua-(μ2-1,2-bis(4-pyridinyl)ethyane-κ2N:N′)-(μ2–pyridazine-4,5-dicarboxylato-κ2O:O′)]dizinc(II) dihydrate, C12H12ZnN3O6
  68. The crystal structure of 2-(4-chloro-2,6-dinitrophenyl)-1-(4-chloro)diazene oxide, C12H6Cl2N4O5
  69. Crystal structure of 2-isopropylthioxanthone, C16H14OS
  70. Crystal structure of methyl 2-(4-(3-(1-methyl-1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-6-yl)phenyl)acetate, C19H17N5O2
  71. Crystal structure of 4,4-dimethyl-2-(trifluoromethyl)-4,5-dihydro-1H-imidazole, C6H9F3N2
  72. Crystal structure of N-methylanilinium 5,7-dihydroxy-4-oxo-2-phenyl-4H-chromene-8-sulfonate monohydrate, C22H21NO8S
  73. Crystal structure of methyl 4-acetoxybenzoate, C10H10O4
  74. Crystal structure of catena-poly[(bis(μ-1,1′-[(5-methoxy-2,4,6-trimethyl-1,3-phenylene)bis(methylene)]bis(1H-1,2,4-triazole)-κ2N:N′)-bis(isothiocyanato-κN)manganese(II)], C34H40MnN14O2S2
  75. Crystal structure of N-(2-methylphenyl)(propan-2-yloxy)carbothioamide, C11H15NOS
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