Home The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O
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The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O

  • Zhixu Zhou , Dan Long , Qing-Mei Wu , De-Hou Yu EMAIL logo and Hong-Guang Lu EMAIL logo
Published/Copyright: October 8, 2018

Abstract

C8H5N2O, monoclinic, P21 (no. 4) a = 7.892(8) Å, b = 6.088(6) Å, c = 15.701(16) Å, β = 90.08(3)°, V = 754.4(13) Å3, Z = 4, Rgt(F) = 0.0423, wRref(F2) = 0.1032, T = 273 K.

CCDC no.: 1855837

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless block
Size:0.22 × 0.20 × 0.18 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.12 mm−1
Diffractometer, scan mode:APEX2, ϕ and ω scans
θmax, completeness:25.1°, 98%
N(hkl)measured, N(hkl)unique, Rint:4791, 2635, 0.036
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2048
N(param)refined:217
Programs:Bruker [1], SHELX [2], [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.1106(4)0.4691(7)0.6429(3)0.0744(10)
C20.1149(4)0.5379(6)0.7264(2)0.0739(10)
H20.06890.67280.74190.089*
C30.1888(4)0.4029(6)0.7871(2)0.0661(9)
H30.19250.44640.84390.079*
C40.2576(4)0.2019(5)0.7628(2)0.0560(8)
C50.2508(4)0.1385(6)0.6775(2)0.0693(9)
H50.29720.00470.66090.083*
C60.1754(4)0.2736(7)0.6170(3)0.0785(11)
H60.16950.23120.56010.094*
C70.3388(4)0.0599(5)0.8258(2)0.0566(8)
C80.4258(5)−0.0442(6)0.9472(2)0.0783(10)
H80.4477−0.05001.00530.094*
C90.3655(4)0.8908(7)0.4014(3)0.0812(11)
C100.2907(4)0.6886(7)0.4021(2)0.0803(11)
H100.27660.61120.45270.096*
C110.2361(4)0.6019(6)0.3247(2)0.0663(9)
H110.18530.46420.32330.080*
C120.2571(3)0.7198(6)0.2496(2)0.0561(8)
C130.3348(4)0.9241(5)0.2519(2)0.0685(9)
H130.34971.00350.20190.082*
C140.3901(4)1.0095(7)0.3287(3)0.0804(11)
H140.44321.14570.33080.096*
C150.1985(4)0.6311(6)0.1674(2)0.0600(8)
C160.0946(5)0.4029(9)0.0806(3)0.0905(12)
H160.04690.27580.05810.109*
F10.0381(3)0.6011(4)0.58288(15)0.1069(8)
F20.4186(3)0.9754(5)0.47792(16)0.1269(11)
N10.4158(4)−0.1219(5)0.81395(18)0.0702(8)
N20.4732(4)−0.1923(5)0.8952(2)0.0768(8)
N30.1987(4)0.7232(6)0.0931(2)0.0812(9)
N40.1296(4)0.5694(7)0.0357(2)0.0912(10)
O10.3413(3)0.1213(4)0.90992(14)0.0765(7)
O20.1333(3)0.4263(4)0.16505(15)0.0762(7)

Source of material

All chemicals, reagents and solvents are of analytical grade and are commercially available. Preparation of ethyl 4-fluorobenzoate: Thionyl chloride (17.0 g, 142.8 mmol) was dropped into a stirred solution of parafluorobenzoic acid (10 g, 71.4 mmol) in absolute ethanol (100 mL) under refluxing. The reaction mixture was monitored by TLC and then evaporated to dryness in vacuum to get the crude product (11.6 g, 97%), which was used in the next reaction without purification. Preparation of 4-fluorobenzohydrazide: ethyl 4-fluorobenzoate (11.6 g, 69.3 mmol) in 30 mL ethanol was dropped into a stirred solution of hydrazine hydrate (28 g, 554.4 mmol) in 100 mL ethanol under refluxing. The mixture was filtrated and refined with ethanol to obtain a white solid (9.5 g, 89%). Preparation of 2-(4-fluorophenyl)-1,3,4-oxadiazole: in a 100 mL round bottom flask, 4-fluorobenzohydrazide (9.5 g, 61.7 mmol) was dissolved in triethyl orthoformate (27.4 g, 185.1 mmol) and the reaction solution was heated to 150 °C to reflux for 5 h. The mixture was poured into water and extracted by ethyl acetate (3*200 mL) to get the crude product. The crude was purified by silica gel column chromatography to afford the title compound. Yield: (5.8 g, 57%). 1H-NMR (400 MHz, CDCl3) δ 8.49 (s, 1H), 8.16–8.04 (m, 2H), 7.27–7.15 (m, 2H). Crystals suitable for X-ray analysis were grown in hexane/chloroform at room temperature.

Experimental details

All hydrogen atoms were placed in geometrically calculated positions. The Uiso values of the hydrogen atoms of methyl groups were set to 1.5Ueq(Cmethyl) and the Uiso values of all other hydrogen atoms were set to 1.2Ueq(C).

Comment

Oxadiazole and its derivatives are an important class of physiologically active substances widely used in medicine and agriculture as antibiotics [4], and studied in terms of micro wave synthesis [5], [6].

The structure of the title compound was clarified by spectroscopy and X-ray diffraction. There are two crystallographically independent molecules in the asymmetric unit (cf. the figure). Both molecules are almost identical concerning their geometric parameters. All atoms in each of the two molecules are on the same plane. Molecules are packed in the crystal structure in a layered manner and stabilized by van der Waals forces.

Acknowledgements

This work was supported by The Scientific Research Foundation for Talent Introduced in Guizhou University (Grant No. 201618) and the Science and Technology Program of Guizhou Province [2017]1049.

References

1. BRUKER. SMART APEX software (5.624) for SMART APEX detector, Bruker Axs Inc. Madison. WI, USA (2001).Search in Google Scholar

2. Sheldrick, G. M.: SHELXTL, Version 6.10. Bruker AXS Inc., Madison. WI, USA (2000).Search in Google Scholar

3. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

4. Montgomery, J. I.; Toogood, P. L.; Hutchings, K. M.; Liu, J.; Lakshimi, N.; Braden, T.; Dermyer, M. R.; Kulynych, A.; Smith, Y. D.; Warmus, J. S.; Taylor, C.: Discovery and SAR of benzyl phenyl ethers as inhibitors of bacterial phenylalanyl-tRNA synthetase. Bioorg. Med. Chem. Lett. 19 (2009) 665–669.10.1016/j.bmcl.2008.12.054Search in Google Scholar PubMed

5. Suresh, D.; Kanagaraj, K.; Pitchumani, K.: Microwave promoted one-pot synthesis of 2-aryl substituted 1,3,4-oxadiazoles and 1,2,4-oxadiazole derivatives using Al3+-K10 clay as a heterogeneous catalyst. Tetrahedron Lett. 55 (2014) 3678–3682.10.1016/j.tetlet.2014.05.004Search in Google Scholar

6. Rouhani, M.; Ramazani, A.; Sang, W. J.: Novel, fast and efficient one-pot sonochemical synthesis of 2-aryl-1,3,4-oxadiazoles. Ultrason. Sonochem. 21 (2014) 262–267.10.1016/j.ultsonch.2013.06.009Search in Google Scholar PubMed

Received: 2018-08-18
Accepted: 2018-09-05
Published Online: 2018-10-08
Published in Print: 2018-12-19

©2018 Zhixu Zhou et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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