Home Physical Sciences Crystal structure of N-(4-methoxybenzyl)pyridazin-3-amine- a rare Z′ = 4 structure, C12H13N3O
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Crystal structure of N-(4-methoxybenzyl)pyridazin-3-amine- a rare Z′ = 4 structure, C12H13N3O

  • Xin-Hua Lou EMAIL logo , Qing-Li Zhou , Wen-Yuan Liu and Xue-Qing Hu
Published/Copyright: October 11, 2018

Abstract

C12H13N3O, triclinic, P1̄ (no. 2), a = 10.2233(9) Å, b = 10.2902(9) Å, c = 24.2253(19) Å, α = 86.607(7)°, β = 88.529(7)°, γ = 62.515(9)°, V = 2256.9(4) Å3, Z = 8, Rgt(F) = 0.0425, wRref(F2) = 0.1239, T = 291(2) K.

CCDC no.: 1848646

One of four crystallographically independent molecules of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow
Size:0.22 × 0.20 × 0.08 mm
Wavelength:Cu Kα radiation (1.54184 Å)
μ:0.68 mm−1
Diffractometer, scan mode:Xcalibur, ω
θmax, completeness:67.1°, >99%
N(hkl)measured, N(hkl)unique, Rint:16086, 8063, 0.022
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 6060
N(param)refined:582
Programs:SHELX [3], CrysAlisPRO [2]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.7370(2)0.7842(2)0.15269(8)0.0728(5)
H10.74560.73060.12200.087*
C20.6059(2)0.9111(2)0.16011(8)0.0686(5)
H20.52820.94170.13520.082*
C30.59494(19)0.98814(19)0.20446(7)0.0597(4)
H30.50901.07290.21160.072*
C40.71843(17)0.93578(17)0.23967(6)0.0504(4)
C50.8386(2)0.9739(2)0.32022(7)0.0619(4)
H5A0.84281.06280.32870.074*
H5B0.92880.91280.30090.074*
C60.83347(18)0.89358(17)0.37390(7)0.0529(4)
C70.7051(2)0.9008(2)0.39523(7)0.0650(5)
H70.61760.95660.37590.078*
C80.7010(2)0.8276(2)0.44467(8)0.0732(5)
H80.61220.83420.45800.088*
C90.8294(2)0.7454(2)0.47374(8)0.0688(5)
C100.9590(2)0.7380(2)0.45353(8)0.0763(6)
H101.04610.68320.47320.092*
C110.9608(2)0.8113(2)0.40423(8)0.0684(5)
H111.04960.80520.39110.082*
C120.7093(4)0.6651(4)0.54332(11)0.1409(13)
H12A0.67350.62520.51610.211*
H12B0.63510.76240.55060.211*
H12C0.73190.60410.57680.211*
N10.84907(17)0.73637(16)0.18670(7)0.0698(4)
N20.84124(15)0.81329(15)0.23115(6)0.0577(3)
N30.71485(16)1.01291(15)0.28347(6)0.0634(4)
H3A0.63401.09000.28990.076*
O10.8376(2)0.67036(19)0.52346(6)0.0985(5)
C1B0.4090(2)0.4192(2)0.32310(8)0.0712(5)
H1B0.47650.41340.34940.085*
C2B0.2806(2)0.5509(2)0.31505(8)0.0691(5)
H2B0.26200.63100.33570.083*
C3B0.18461(19)0.55917(19)0.27681(8)0.0621(4)
H3B0.09680.64450.27030.074*
C4B0.22180(18)0.43325(18)0.24663(7)0.0538(4)
C5B0.1490(2)0.3073(2)0.17973(8)0.0647(5)
H5BA0.05190.31680.17270.078*
H5BB0.19910.22280.20520.078*
C6B0.23327(18)0.27770(18)0.12613(7)0.0565(4)
C7B0.3470(2)0.3127(2)0.11518(7)0.0634(5)
H7B0.37380.35670.14210.076*
C8B0.4224(2)0.2845(2)0.06546(8)0.0686(5)
H8B0.49880.30890.05940.082*
C9B0.3835(2)0.2203(2)0.02514(8)0.0708(5)
C10B0.2727(3)0.1818(3)0.03546(9)0.0871(7)
H10B0.24670.13700.00860.105*
C11B0.2001(2)0.2095(2)0.08547(9)0.0766(6)
H11B0.12660.18120.09200.092*
C12B0.5645(3)0.2222(4)−0.03825(11)0.1223(11)
H12D0.59890.1954−0.07510.183*
H12E0.64300.1666−0.01240.183*
H12F0.53320.3250−0.03520.183*
N1B0.43940(16)0.30293(17)0.29549(6)0.0675(4)
N2B0.34526(15)0.30897(15)0.25608(6)0.0605(4)
N3B0.13124(16)0.43638(16)0.20645(6)0.0658(4)
H3BA0.05910.51960.19620.079*
O1B0.44547(19)0.1924(2)−0.02649(6)0.1002(5)
C1A0.9692(2)0.3947(2)0.33888(9)0.0766(5)
H1A1.03730.38310.36590.092*
C2A0.8502(3)0.5327(2)0.32878(9)0.0778(6)
H2A0.83880.61210.34850.093*
C3A0.7531(2)0.54814(19)0.29005(8)0.0674(5)
H3AA0.67250.63870.28170.081*
C4A0.77627(18)0.42281(18)0.26213(7)0.0551(4)
C5A0.6891(2)0.3079(2)0.19491(8)0.0720(5)
H5AA0.59100.31620.19260.086*
H5AB0.74900.21900.21700.086*
C6A0.75293(18)0.29266(19)0.13758(7)0.0574(4)
C7A0.7489(2)0.4101(2)0.10585(8)0.0729(5)
H7A0.70840.50180.12080.087*
C8A0.8031(2)0.3958(2)0.05241(8)0.0764(6)
H8A0.79820.47710.03180.092*
C9A0.8640(2)0.2609(2)0.02995(8)0.0633(4)
C10A0.8686(2)0.1416(2)0.06093(8)0.0669(5)
H10A0.90920.04990.04600.080*
C11A0.81341(19)0.15856(19)0.11366(8)0.0647(5)
H11A0.81670.07750.13390.078*
C12A0.9327(3)0.3494(3)−0.05330(10)0.1070(8)
H12G0.97910.3152−0.08810.161*
H12H0.98960.3837−0.03340.161*
H12I0.83520.4283−0.05960.161*
N1A0.98913(17)0.28034(17)0.31190(7)0.0712(4)
N2A0.89252(15)0.29289(15)0.27255(6)0.0603(4)
N3A0.67961(17)0.43192(18)0.22318(7)0.0720(4)
H3AB0.60790.51690.21470.086*
O1A0.92396(17)0.23344(16)−0.02212(6)0.0847(4)
C1C0.7108(2)0.2755(2)0.83158(9)0.0769(6)
H1C0.69640.34090.85880.092*
C2C0.8462(2)0.1502(2)0.82919(9)0.0763(5)
H2C0.92110.13170.85420.092*
C3C0.86532(19)0.0564(2)0.78953(8)0.0639(5)
H3C0.9533−0.02940.78660.077*
C4C0.74780(17)0.09255(17)0.75271(7)0.0531(4)
C5C0.6475(2)0.0264(2)0.67326(7)0.0655(5)
H5CA0.55220.08460.68990.079*
H5CB0.6534−0.06760.66550.079*
C6C0.65765(18)0.10285(18)0.61971(7)0.0541(4)
C7C0.57760(19)0.25285(19)0.61066(7)0.0612(4)
H7C0.51470.30790.63820.073*
C8C0.5884(2)0.32292(18)0.56203(7)0.0624(4)
H8C0.53320.42420.55700.075*
C9C0.68056(19)0.24388(18)0.52064(7)0.0573(4)
C10C0.7607(2)0.0945(2)0.52809(8)0.0714(5)
H10C0.82250.03980.50030.086*
C11C0.7486(2)0.0261(2)0.57739(8)0.0697(5)
H11C0.8037−0.07520.58230.084*
C12C0.7717(3)0.2490(3)0.42918(9)0.0993(8)
H12J0.87300.19720.44070.149*
H12K0.76160.31840.39920.149*
H12L0.74040.18040.41720.149*
N1C0.60280(18)0.30503(17)0.79705(7)0.0723(4)
N2C0.61978(15)0.21435(16)0.75654(6)0.0621(4)
N3C0.76221(16)0.00257(16)0.71247(6)0.0656(4)
H3CA0.8454−0.07470.70980.079*
O1C0.68404(16)0.32350(14)0.47373(5)0.0784(4)

Source of material

The title compound was obtained from the ruthenium-catalyzed N-alkylation of pyridazin-3-amine and (4-methoxyphenyl)methanol as described in literature [3] and recrystallized from dichloromethane/petroleum ether solution at room temperature to give the desired crystals suitable for single-crystal X-ray diffraction.

Experimental details

Hydrogen atoms were added using the riding models implemented in the SHELX system.

Comment

The C—N bond forming reaction has become widely used in organic synthesis as well as in materials and pharmaceuticals [4], [5]. Among of these routes, the metal-catalyzed hydrogen autotransfer process is highly desirable [6], [7], [8], [9], because the use of alcohols as electrophiles in the C—N bond forming reaction improves the atom efficiency of the process, producing only water as by product. However, the N-alkylation of heteroaryl amines have been relatively less reported [3]. Considering that the pyridazine derivatives are an important class of heterocyclic molecules [10], [11], [12], we prepared the N-alkylation product of pyridazin-3-amine and (4-methoxyphenyl)methanol.

The molecular structure of one of the four crystallographically independent molecules forming the asymmetric unit of the title crystal structure of the title compound is shown in the figure. The pyridazine ring and aryl moiety are not coplanar and their best planes enclose an angle of 72°, which is similar to that of related derivatives [13]. In the crystal there exist intermolecular NH⋯N hydrogen bonds (N⋯H = 2.277 and 2.185 Å) and some weak non classical CH⋯N hydrogen bonds (N⋯H = 2.516 or 2.547 Å), which are attributed to construct the one-dimensional structure. Owing to the CH/π hydrogen bonds (the distance is 3.374 Å) [14], the crystal structure of the title compound is extended into a 2D architecture. This network is very complex as each of the four crystallographically independent molecules shows an at least slightly different surrounding [15].

Acknowledgements

This work was supported by the tackle key problem of science and technology Project of Henan Province (172102210411).

References

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Received: 2018-06-17
Accepted: 2018-09-05
Published Online: 2018-10-11
Published in Print: 2018-12-19

©2018 Xin-Hua Lou et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  40. Crystal structure of bis(perchlorato-κ1O)-bis(3,4,5-trimethoxy-N-(pyridin-2-yl)benzamide-κ2N,O)copper(II), C32H30Cl2CuN4O16
  41. Crystal structure of methyl 4-methyl-2,5-di(pyridin-4-yl)-1H-pyrrole-3-carboxylate monohydrate C17H15N3O2⋅H2O
  42. Crystal structure of dimethyl 5-(10-(methoxycarbonyl)anthracen-9-yl) isophthalate,C26H20O6
  43. Crystal structure of tert-butyl (R)-(1-(benzylamino)-3-methoxy-1-oxopropan-2-yl)carbamate, C16H24N2O4
  44. Crystal structure of aqua-bis(1,5-dimethyl-2-phenyl-4-(((E)-4-pyridylmethylene)amino)pyrazolidin-3-one-κN)-(nitrato-κO)-(nitrato-κ2O,O′)zinc(II), C34H34N10O9Zn
  45. Crystal structure of catena-poly[dichlorido-(μ2-1,5-dimethyl-2-phenyl-4-((pyridin-4-ylmethylene)amino)-1,2-dihydro-3H-pyrazol-3-one-κ2N:O)cobalt(II)] – methanol (1/1), C18H20Cl2CoN4O2
  46. Crystal structure of poly[diaqua-bis(μ2-1-(4-(1H-imidazol-1-yl)benzyl)-1H-1,2,4-triazole-κ2N:N′)manganese(II)]bis(2-carboxybenzoate) dihydrate, MnC40H40N10O12
  47. The crystal structure of 4-((3,4-dichlorobenzylidene)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one, C18H15Cl2N3O
  48. Crystal structure of bis(2-methoxy-6-((2-(pyrimidin-2-yl)hydrazono)methyl)phenolato-κ3N,N′,O)iron(III) perchlorate, C24H22N8O8ClFe
  49. The crystal structure of 2-[4-hydroxy-3-methoxyphenyl]-4,4,5,5-tetramethylimidazoline-3-oxide-1-oxyl, C14H19N2O4
  50. Crystal structure of diaqua-bis(3,3-dimethylacrylato-κ2O,O′)zinc(II), C10H18ZnO6
  51. Crystal structure of dichloro-tetrakis[(E)-1-(4-chlorophenyl)-4,4-dimethyl-2-(1H-1,2,4-triazol-1-yl)pent-1-en-3-ol-κN]cadmium (II), C60H74CdCl6N12O4
  52. Crystal structure of (20R)-20,25-epoxy-dammaran-3,12-dione, C30H48O3
  53. Crystal structure of (E)-3′,6′-bis(ethylamino)-2′,7′-dimethyl-2-((pyridin-2-ylmethylene)amino)spiro[isoindoline-1,9′-xanthen]-3-one, C32H31N5O2
  54. The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O
  55. Crystal structure of (2,2′-bipyridine-κ2N,N′)bis(tri(p-tolyl)phosphine-κP)copper(I) tetrafluoroborate – 4,4′-bipyridine (2/1), C57H54BCuF4N3P2
  56. The crystal structure of 2,6-dimethyl-3,5-dinitrocyclohexa-2,5-diene-1,4-dione, C8H6N2O6
  57. The crystal structure of 2,3-dimethyl-1,4-dinitrobenzene – a Z′ = 4 structure, C8H8N2O4
  58. Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb
  59. Crystal structure of 2-(4-fluorophenyl)-N-phenyl-2-(phenylamino)ethanesulfonamide – toluene (1/0.5), C23.5H23FN2O2S
  60. Crystal structure of pyrene-4-aldehyde, C17H10O
  61. Crystal structure of 2-(furan-2-yl)-5-methyl-1,3-dioxane-5-carboxylic acid, C10H12O5
  62. Crystal structure of 2-(4-chlorophenyl)-3-phenyl-1,8-naphthyridine, C20H13N2Cl
  63. Crystal structure and photochromism of 1-(2-ethyl-5-formylthiophen-3yl)-2-(2-cyano-1,5-dimethyl-4-pyrrl)-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C19H14F6N2OS
  64. Crystal structure of 2-(4-bromophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16BrIN2
  65. Crystal structure of 2-(4-(dimethylamino)phenyl)-10-methylacridin-9(10H)-one, C22H20N2O
  66. Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S
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