Home Crystal structures, Hirshfeld surface analysis and Pixel energy calculations of three trifluoromethylquinoline derivatives: further analyses of fluorine close contacts in trifluoromethylated derivatives
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Crystal structures, Hirshfeld surface analysis and Pixel energy calculations of three trifluoromethylquinoline derivatives: further analyses of fluorine close contacts in trifluoromethylated derivatives

  • Lígia R. Gomes , Emerson T. da Silva , Marcus V.N. de Souza , James L. Wardell EMAIL logo and John N. Low EMAIL logo
Published/Copyright: November 2, 2019

Abstract

As many studies have revealed, the introduction of a CF3 group into an organic compound can result in significant enhancement of biological activity. Factors which lead to this enhancement are thus of great interest. To investigate further this area, we have looked at the ability of fluorine to form close contacts with various atoms in organic compounds, e.g. F⋯F, F⋯O/O⋯F, F⋯C/C⋯F, H⋯F/F⋯H, and F⋯N/N⋯F, as indicated from crystal structure determinations and Hirshfeld analysis studies on trifluoromethylated compounds. Herein we first report the crystal structures, Hirshfeld surface analyses (HSA), and Pixel energy calculations of three trifluoromethylated quinoline derivatives, namely 2-(trifluoromethyl)quinolin-4-ol, 1, 4-ethoxy-2-(trifluoromethyl)quinoline, 2, and N1-(2,8-bis(trifluoromethyl)quinolin-4-yl)ethane-1,2-diamine, 3. Of particular interest is the determination of the various fluorine⋯atom close contacts. The total percentages of fluorine⋯atom close contacts in compounds 13 were determined to be high at 47, 41.2 and 60.7%, respectively. As relatively few HSA studies on trifluoromethylated compounds have reported the percentages of individual atom⋯atom close contacts, we have also determined the percentages of atom⋯atom close contacts for 20 more trifluoromethylated compounds: the range of total fluorine⋯atom close contacts for these compounds was 20–60%. While these data are based on connections between similar molecules in a crystalline state, they also clearly suggest that a compound containing CF3 group(s) has the potential to make extensive intermolecular connections/close contacts with organic material. Thus a possible factor for the enhanced biological activity of a compound bearing CF3 group(s) could be the propensity of the CF3 group to form many close contacts, thereby aiding binding or interaction with a biological target.

1 Introduction

The replacement of a carbon-hydrogen bond by a carbon-fluorine bond in an organic compound can result in significant changes in chemical, physical and biological properties [1], [2] – a result of the small and highly electronegative fluorine atom with a strong tendency to form intermolecular interactions. While fluorine-substituted compounds quite generally have had a valuable place in medicinal chemistry [3], [4], [5], [6], [7], trifluoromethylated compounds have been of special importance [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20].

As has become very well established from many structural studies, fluorine atoms can participate in different intermolecular interactions, such as C–H⋯F, F⋯F, C–F⋯π, etc. [21], [22], [23], [24], [25]. These interactions while possibly individually weak, collectively can have significant influences on the linking of molecules, and thus make significant contributions to supramolecular arrangements in crystals. Use of programs, such as Platon [26], has facilitated the study of such intermolecular interactions and allows detailed analyses of their nature. The geometric analysis with Platon is enhanced by an analysis of the calculated Hirshfeld surfaces [27] through CrystalExplorer [28]. Here, the contact distances di and de from the Hirshfeld surface to the nearest atoms inside and outside the surface, respectively, are calculated to enable the analysis of the intermolecular interactions. Crucially, the combination of de and di in the form of two-dimensional fingerprint plots (FP) [29] provides both a useful summary and convenient visualization of the most prominent intermolecular contacts operating in a crystal. Importantly, these can be calculated for the entire crystal, encompassing all surface contacts, or for individual interactions, e.g. C–H⋯F contacts. Furthermore summation of the all close contacts for an atom, e.g. C–H⋯F, F⋯F, C–F⋯π for fluorine, provides a useful overall measure of the importance of fluorine to the binding of molecules in a crystal.

While most Hirshfeld studies have reported qualitatively on the presence of individual close contacts in the FP plots, few have reported quantitatively on them, i.e. have not determined the percentages of each type of close contact. Examples where percentages of close atom⋯atom contacts were reported involve mefloquinium salts [30], [31], [32], for which the total percentages of fluorine close contacts were high. Such high percentages clearly point to the importance of fluorine close contacts in linking molecules, which could be important in drug-target interactions. To further investigate such percentages, we have studied the crystal structures and Hirshfeld surface analyses of some mono- and bis(trifluoromethylated) quinoline derivatives, 13, see Scheme 1. These compounds were part of recent biological studies [15], [16] of simplified mefloquine derivatives. To gain further data, we have determined the fluorine contacts in a number of the trifluoromethylated compounds whose structures we had previously reported. While the Hirshfeld and Fingerprint findings are concerned with interactions in individual crystals, they will provide evidence of the potential for compounds having fluorine atoms to be involved in close contacts with other surfaces, including target sites.

Scheme 1: Reagents: i=Polyphosphoric acid, F3CCOCH2CO2Et [16]; ii=EtBr, K2CO3 [16]; iii=MeI, K2CO3; iv=H2NCH2CH2NH2 [15].
Scheme 1:

Reagents: i=Polyphosphoric acid, F3CCOCH2CO2Et [16]; ii=EtBr, K2CO3 [16]; iii=MeI, K2CO3; iv=H2NCH2CH2NH2 [15].

In addition, Pixel energy calculations have been carried out on compounds 13. The program Pixel computes energy values for intermolecular interactions within the crystal environment and allows a division of the total energy into Coulombic, polarization, dispersion, and repulsion terms for the structure as well as for pairs of molecules, allowing for the identification of the pair aggregates that mostly contribute to the stabilization of the structure.

2 Experimental

2.1 Synthesis of mefloquine derivatives, 1–3

Compounds 13 were prepared as reported [15], [16]: all had physical and spectral data in agreement with those published. Each was recrystallized for the crystallographic study by the slow evaporation of a methanol solution at room temperature.

2.1.1 2-(Trifluoromethyl)quinolin-4-ol, 1

M.p. 205–207°C; lit. [16]: 208–210°C.

2.1.2 4-Ethoxy-2-(trifluoromethyl)quinoline, 2

M.p. 91–93°C; lit. [16]: 90–92°C. – 13C NMR (MeOD, 100 MHz): δ=165.08, 150.23 (q, JCF=34 Hz), 149.22, 132.40, 129.82, 128.84, 123.15, 123.05 (q, JCF=273 Hz), 123.02, 97.96, 66.55, 14.65.

2.1.3 N1-(2,8-Bis(trifluoromethyl)quinolin-4-yl)ethane-1,2-diamine, 3

M.p.: 135–137°C; lit. [15]: 134–136°C. – 13C NMR (DMSO-d6, 100 MHz): δ=152.43, 148.00 (q, JCF=33 Hz), 143.79, 128.58 (q, JCF=5 Hz), 127.77, 126.38 (q, JCF=29 Hz) 124.58, 123.96 (q, JCF=272 Hz), 121.62 (q, JCF=274 Hz), 119.33, 95.40, 42.27, 36.52.

2.2 Crystallography

Crystal data, data collection and structure refinement details are summarized in Table 1 [26], [33], [34], [35], [36], [37], [38], [39], [40].

Table 1:

Crystal data.

123
Crystal data
 Chemical formulaC10H6F3NOC12H10F3NOC13H11F6N3
Mr213.16241.21323.25
 Crystal system, space groupTriclinic, PMonoclinic, P21/cMonoclinic, C2/c
 Temperature, K100100100
a, Å6.7989(4)7.1228(2)14.1700(6)
b, Å7.6105(5)10.2679(2)19.2933(7)
c, Å9.9396(6)15.4452(3)10.9420(4)
α, deg69.063(6)90.090.0
β, deg89.301(5)100.698(2)118.100(4)
γ, deg67.198(6)90.090.0
V, Å3438.02(5)1109.97(4)2638.8(2)
Z248
 Radiation typeMoKαMoKαMoKα
μ, mm−10.150.130.16
 Crystal size, mm30.30×0.10×0.020.30×0.20×0.050.14×0.09×0.04
Data collection
 DiffractometerXtaLAB AFC12 (RCD3): Kappa single diffractometerXtaLAB AFC12 (RCD3): Kappa single diffractometerRigaku FRE+equipped with VHF Varimax confocal mirrors and an AFC10 goniometer and HG Saturn 724+detector diffractometer
 Abs. correctionMulti-scan [33]Multi-scan [34]Multi-scan [35]
Tmin, Tmax0.721, 1.0000.811, 1.0000.723, 1.000
 Refs. measured101191289815543
 Refs. independent200725373035
Rint0.0370.0260.037
 Refs. obs. [I>2 σ(I)]179724112582
 (sin θ/λ)max, Å−10.6490.6490.649
Refinement
R[F2>2 σ(F2)]0.0670.0550.043
wR (F2)0.1730.1430.106
 Gof (S)1.211.251.04
 No. of reflections200725373035
 No. of parameters140155211
 H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH-atom parameters constrainedH atoms treated by a mixture of independent and constrained refinement
 Δρmax, min, e Å−30.37, −0.240.33, −0.280.36, −0.22
 No. of reflections200725373035
 CCDC No.189550718955041895506
  1. Computer programs: CrysAlis Pro (version 1.171.39.9g) [33], CrysAlis Pro (version 1.171.38.43) [34], CrysAlis Pro (version 1.171.38.41) [35], Oscail [36], Shelxt [37], ShelXle [38], Shelxl-2014/7 [39], Mercury [40], Platon [26].

2.3 Hirshfeld surface analyses

The Hirshfeld surfaces and two-dimensional fingerprint (FP) plots [27] were generated using CrystalExplorer 3.1 [28]. The Hirshfeld surfaces mapped over dnorm were scaled between −0.140 and 1.600 arbitrary units.

2.4 Lattice energy and intermolecular interaction energy calculations

Lattice energies and intermolecular interaction energies were calculated using the Pixel code implemented in the CLP package [41], [42]. The program Pixel calculates intermolecular energies by a distributed charge description on the basis of a preliminary evaluation of charge density from Gaussian at MP2/6-311G** level of theory (CUBE option). The Pixel mode calculates the total stabilization energies of the packing of the molecules, Etot, distributed as Coulombic (Ecoul), polarization (Epol), dispersion (Edisp), and repulsion (Erep) terms between separate, rigid molecules: results are listed in Table 2. Coulombic terms are treated on the basis of Coulomb’s law, polarization terms are calculated as a linear dipole approximation, dispersion terms are based on London’s inverse six-power approximation involving ionisation potentials and polarizabilities, and the repulsion term is derived from the wave function overlap.

Table 2:

Interaction energies calculated by the program Pixel 3.1, based on densities computed with G09, on the MP2/6-31** level of theory.

CompoundEtot (kJ mol−1)Ecoul (kJ mol−1)Epol (kJ mol−1)Edisp (kJ mol−1)Erep (kJ mol−1)
1−105.5−76.1−33.7−99.9104.2
2−93.7−39.6−15.2−113.774.8
3−156.6−103.1−41.2−148.2135.9

Partial analysis of the Pixel calculations allowed the identification of the pairs of molecules, which contribute most to the total energy of the packing. The results for the important pairs are provided in Table 3: such energy values pertain to both molecules in the pair, the reference molecule at x, y, z and its partner in the pair: the energies associated with the reference molecule at x, y, z are half of these sums.

Table 3:

Intermolecular energies ((kJ mol−1) for the pairs of molecules contributing most to the total packing energy of the crystals.

CompoundMolecular pairMolecules at x, y, z andContactsEtotEcoulEpolEdispErep
1Ia1–x, y, zO4⋯H8–C8

O4⋯H1–N1
−46.3−59.2−24.6−23.060.4
1Ib1+x, y, zC8–H8⋯O4

N1–H1⋯O4
−46.3−59.2−24.6−23.060.4
1II1–x, −y, 1–z−32.4−13.2−3.5−36.921.3
1III1–x, 1–y, 1–zπ⋯π−41.7−27.0−7.5−51.444.1
1IV2–x, −y, 1–z−10.8−0.4−3.5−14.47.4
2I1–x, 1–y, 1–zC–H⋯π−46.7−24.5−9.1−64.551.4
2IIx, 1–y, 1–z−39.5−15.8−7.8−59.443.6
2IIIax, 0.5+y, 0.5–zC7–H7⋯N1−15.8−9.5−4.6−15.413.7
2IIIbx, −0.5+y, 0.5–zN1⋯H7–C7−15.8−9.5−4.6−15.413.7
3I1–x, y, 0.5–zN44⋯H41–C41

N44⋯H5–C5

C5–H5⋯N44

C41–H41⋯N44

C⋯C
−102.1−109.7−51.4−104.9163.9
3II0.5–x, 0.5–y, −z−61.1−31.5−9.0−64.243.6
3IIIa0.5+x, 0.5–y, 0.5+zN1⋯H44A–N44

F811⋯H44A–N44
−29.6−19.9−4.4−16.311.0
3IIIb−0.5+x, 0.5–y, −0.5+zN4–H44A⋯N1

N44–H44A⋯F811
−29.6−19.9−4.4−16.311.0
3IV0.5–x, 0.5–y, −1–z−35.6−22.0−4.1−24.915.4
3V1–x, 1–y, −zC7–H7⋯F813

F813⋯H7–C7
−13.9−9.1−1.6−7.74.6

3 Results and discussion

3.1 General

The asymmetric units of the crystals of compounds 13 contain each a single molecule. Compound 1 crystallizes in the triclinic space group, P1̅, with Z=2. Compound 2 crystallizes in the monoclinic space group, P21/c, with Z=4. Compound 3 crystallizes in the monoclinic space group, C2/c, with Z=8. Figure 1 illustrates the atom arrangements and numbering schemes. The quinoline rings are nearly planar in all cases: outliers for 1 are C8 and C2 at +0.029(2) and 0.030(2) Å, respectively, for 2 C2 and C8A at +0.013(1) and –0.017(1) Å, respectively and for 3, C3 and N1 at +0.051(2) and −0.156(1) Å, respectively. Molecules of compound 1 exists in the quinolinone form. Such a form has been reported for several crystalline 4-hydroxyquinoline derivatives, including the parent compound [43]. Compound 3 exhibits an intramolecular hydrogen bond, namely C7–H7⋯F813.

Fig. 1: Views of the asymmetric units of 1–3 with the numbering schemes. Displacement ellipsoids are drawn at the 50% probability level, hydrogen atoms as spheres with arbitrary radii.
Fig. 1:

Views of the asymmetric units of 13 with the numbering schemes. Displacement ellipsoids are drawn at the 50% probability level, hydrogen atoms as spheres with arbitrary radii.

Details of the hydrogen bonding and other intermolecular interactions are provided in Table 4. There the π⋯π and X–Y⋯π interactions, obtained from the Platon analyses, are listed for a specific ring, either the phenyl or the pyridyl ring, of the quinoline system. However, in the subsequent Figures and discussion in this article, such π interactions are normally referenced to the centre of the quinoline system, Cg, taken as the midpoint of the C–C bond common to both rings. Thus, for example the Cg⋯Cg distance in a π⋯π interaction involving two quinoline moieties is the distance between the two mid points. This has been done for two reasons, (i) one, the major one, the quinoline π system involves both rings, and (ii) it simplifies the diagrams.

Table 4:

Percentages of atom-atom contacts for 13.

Close contact123
H⋯H13.329.017.2
H⋯O/O⋯H14.20.2
H⋯C/C⋯H10.612.97.7
C⋯C9.67.07.2
H⋯N/N⋯H0.35.75.5
O⋯C/C⋯O1.62.1
O⋯N/N⋯O0.61.4
C⋯N/N⋯C2.80.51.8
F⋯F4.63.512.2
F⋯O/O⋯F0.30.1
F⋯C/C⋯F1.70.40.7
H⋯F/F⋯H40.437.247.2
F⋯N/N⋯F0.6
Total F⋯X/X⋯F close contacts47%41.260.7

Table 2 shows the interaction energies calculated by the program Pixel for the three compounds. In all cases, the dispersion term contributes the majority of the stabilization suggesting that the π⋯π and X–Y⋯π interactions are important for the structural stability. These interactions seem to assume special relevance for 2, when compared with 1 and 3, as the dispersive energy of the structure contributes 67.5% of the total stabilization energy. As discussed later, although to a lesser extent, the F⋯F and F⋯H contacts also contribute significantly to the total dispersion energy.

3.2 Compound 1

The intermolecular interactions in compound 1 are a strong classical N1–H1⋯O4 hydrogen bond, weaker C8–H8⋯O4 and C7–H7⋯F21 hydrogen bonds, and a π⋯π stacking interaction. In addition, there are F23⋯F23 close contacts at 2.819(3) Å, well within the sum of the contact radii of 2×1.47 Å. Table 5 lists the symmetry operations. The Hirshfeld surface and fingerprint (FP) plots [28], [29] are shown in Fig. 2. Percentages of atom⋯atom close contacts, obtained from the FP plots, are listed in Table 2. As can be seen the highest percentage of any atom⋯atom close contact is clearly that for F⋯F at 40.4%: the next highest percentage is that of H⋯O/O⋯H at only 14.2%. Including other F⋯atom contacts, the total fluorine atom contacts are almost a half of all the contacts at 47%.

Table 5:

Geometric parameters (Å, deg) for intra- and intermolecular interactions.a

(a) Intramolecular hydrogen bonds
CompoundD–H⋯AD–HH⋯AD⋯AD–H⋯A
3C7–H7F8130.952.332.680(2)101
(b) Intermolecular hydrogen bonds
CompoundD–H⋯AD–HH⋯AD⋯AD–H⋯ASymmetry code
1N1–H1⋯O40.881.922.762(3)159−1+x, y, z
1C8–H8⋯O40.952.513.229(3)132−1+x, y, z
1C7–H7⋯F210.952.573.519(3)173x, 1+y, −1+z
2C7–H7⋯N10.952.593.535(2)176x, 1/2+y, 1/2–z
2C42–H42A⋯F210.982.593.384(3)1411–x, 1/2+y, 3/2–z
3N41–H41⋯N440.85(3)2.17(3)2.987(2)162(2)1–x, y, 1/2–z
3C5–H5A⋯N440.952.583.512(2)1691–x, y, 1/2–z
3C43–H43B⋯F8110.992.553.4031441/2–x, –1/2+y, 1/2–z
3C7–H7⋯F8130.952.623.4531471–x, 1–y, −z
3C3–H3⋯F2110.952.633.5601661/2–x, 1/2–y, 1–z
3N44–H44A⋯F2130.872.663.4051451/2+x, 1/2–y, 1/2+z
3N44–H44A⋯N10.872.643.4241501/2+x, 1/2–y, 1/2+z
3N44–H44A⋯F8110.872.612.9711071/2+x, 1/2–y, 1/2+z
3N44–H44B⋯F8110.922.672.971001/2+x, 1/2–y, 1/2+z
(c) –X⋯π interactionsa
CompoundC–H⋯Cg(J)H⋯CgHperpγC–H⋯CgC⋯Cg
2C41–H41A⋯Cg22.742.6415.101523.6441–x, 1–y, 1–z
(d) π⋯π interactionsb
Cg(I)⋯Cg(J)Cg⋯CgαβγCgIperpCgJperpSymmetry code
1Cg(1)⋯Cg((1)3.5553(12)020.820.83.3237(9)3.3237(9)1–x, 1–y, 1–z
1Cg(1)⋯Cg(2)3.6285(13)2.27(10)22.822.63.3492(9)3.3446(9)1–x, 1–y, 1–z
1Cg(2)⋯Cg(1)3.6284(13)2.27(10)22.622.83.3446(9)3.3492(9)1–x, 1–y, 1–z
1Cg(1)⋯Cg(2)4.0586(13)2.27(10)32.331.03.4774(9)3.4290(9)1–x, −y, 1–z
1Cg(2)⋯Cg(1)3.9731(13)028.828.83.4830(9)−3.4829(9)1–x, −y, 1–z
2Cg(1)⋯Cg(1)3.7370(8)024.324.33.4058(6)3.4058(6)x, 1–y, 1–z
2Cg(1)⋯Cg(2)3.7058(8)1.12(7)22.323.13.4098(6)3.4288(6)x, 1–y, 1–z
2Cg(2)⋯Cg(1)3.7944(8)1.12(7)23.122.33.4288(6)3.4098(6)1–x, 1–y, 1–z
3Cg(1)⋯Cg(2)3.9847(9)14.00(8)22.928.23.3400(6)3.4960 (7)1–x, y, 1/2–z
3Cg(1)⋯Cg(2)3.7943(10) 3.52(8)31.334.63.2790(6)3.4054(7)1/2–x, 1/2–y, −z
3Cg(2)⋯Cg(1)3.7943(10)14.00(8)28.322.93.4960(6)3.3400 (6)1–x, y, 1/2–z
3Cg(2)⋯Cg(1)3.9848(9)3.52(8)34.631.33.4054(6)3.2790(6)1/2–x, 1/2–y, −z
3Cg(2)⋯Cg(2)3.5966(9)1113.913.93.4918(7)3.4918(7))1–x, y, 1/2–z
  1. aCg(J)=Center of gravity of ring J; HCg=Distance of H to Cg; HPerp=perpendicular distance of H to ring plane J; γ=angle between Cg–H vector and ring J normal; C–HCg=C–H–Cg angle; CCg=Distance of H to Cg. bCg(I) and Cg(2)=Centres of gravities of pyridinyl and phenyl rings of the quinoline ring, respectively; α=dihedral angle between planes I and J; β=angle Cg(I)→Cg(J); γ=angle Cg(I)→Cg(J) vector and normal to plane J; Cg–Cg=distance between ring centroid; CgIperp=perpendicular distance of Cg(I) on ring; CgJperp=perpendicular distance of Cg(J) on ring.

Fig. 2: Compound 1. (a) A view of the Hirshfeld surface, with designated contacts on the surface indicated for N1–H1⋯O4, C8–H8⋯O4 and C7–H7⋯F21 hydrogen bonds and a π⋯π stacking interaction, (b) the FP plot: the blue spikes ending at de; di=(1.4; 1.1) and (1.1; 1.4) relate to F⋯H/H⋯F contacts, the blue spike at the middle of the FP relates to H⋯N/N⋯H contacts, and the high intensity of pixels, green and red areas relate to C⋯C contacts.
Fig. 2:

Compound 1. (a) A view of the Hirshfeld surface, with designated contacts on the surface indicated for N1–H1⋯O4, C8–H8⋯O4 and C7–H7⋯F21 hydrogen bonds and a π⋯π stacking interaction, (b) the FP plot: the blue spikes ending at de; di=(1.4; 1.1) and (1.1; 1.4) relate to F⋯H/H⋯F contacts, the blue spike at the middle of the FP relates to H⋯N/N⋯H contacts, and the high intensity of pixels, green and red areas relate to C⋯C contacts.

The majority of the stabilization energy of the structure, according to Pixel calculations, arise from six distinct pairs of molecules, see Fig. 3. Table 3 lists the calculated energies for each pair of molecules.

Fig. 3: Compound 1. Pairs of molecules, calculated by the Pixel approach to be the most significant contributors to the stabilization: in each case the green reference molecule is at x, y, z and its paired molecule is in element colours, at a designated site: other molecules are drawn in grey, (a) pairs, Ia and Ib, with partner molecules at −1+x, y, z and 1+x, 1–y, 1–z, respectively: molecules are linked by C–H⋯O and N–H⋯O interactions, (b) pair, II: there are no close contacts between the molecules in the pair: the grey coloured molecules provide the conduits for the stabilization: partner molecule is at 1–x, −y, 1–z, (c) two views of pair III, formed from π⋯π interactions: partner molecule at 1–x, 1–y, 1–z, (d) pairs IV, again there is no close contacts between the molecules in the pair: partner molecule is at 2–x, −y, 1–z, (e) pair V showing F⋯F contacts between molecules at x, y, z and −x, 1–y, 1–z.
Fig. 3:

Compound 1. Pairs of molecules, calculated by the Pixel approach to be the most significant contributors to the stabilization: in each case the green reference molecule is at x, y, z and its paired molecule is in element colours, at a designated site: other molecules are drawn in grey, (a) pairs, Ia and Ib, with partner molecules at −1+x, y, z and 1+x, 1–y, 1–z, respectively: molecules are linked by C–H⋯O and N–H⋯O interactions, (b) pair, II: there are no close contacts between the molecules in the pair: the grey coloured molecules provide the conduits for the stabilization: partner molecule is at 1–x, −y, 1–z, (c) two views of pair III, formed from π⋯π interactions: partner molecule at 1–x, 1–y, 1–z, (d) pairs IV, again there is no close contacts between the molecules in the pair: partner molecule is at 2–x, −y, 1–z, (e) pair V showing F⋯F contacts between molecules at x, y, z and −x, 1–y, 1–z.

These six pairs are:

  1. Pairs composed of Ia and Ib, derived from molecules at x, y, z and 1–x, y, z, for Ia and x, y, z and 1+ x, y, z, for Ib, are formed from the linkage of the molecules by the N1–H1⋯O4 and C8–H8⋯O4 hydrogen bonds in an overall C6 chain, see Fig. 3a. With the carbonyl oxygen atoms active as bi-acceptors, this chain contains a R21(6) ring.

  2. Pair II: there are no direct close contacts between the molecules in this pair: the grey coloured molecules provide the conduits for the stabilization: the partner molecule is at 1–x, –y, 1–z, see Fig. 3b.

  3. Pair III: two views, one side-on and the other one looking down the stack show this pair, formed from a π⋯π interaction: partner molecule at 1–x, 1–y, 1–z. The extent of overlap of the π systems in this interaction is high (Fig. 3c); in addition, the perpendicular distance between the best planes though the two molecules is 3.346(13) Å with a Cg⋯Cg separation of 4.777 Å.

  4. Pair IV: again there is no direct close contact between the molecules in this pair: the partner molecule is at 2–x, –y, 1–z (Fig. 3d).

  5. Pair V shows F23⋯F23 contacts between molecules at x, y, z and –x, 1–y, 1–z (Fig. 3e); the F23⋯F23 distance is 2.819(3) Å.

The calculated energies for each of these significant pairs of molecules in 1 are listed in Table 3.

The summation of the Etot energies of pairs IV is −184.9 kJ mol−1, of which one half, −92.45 kJ mol−1, is associated with the common reference molecule at x, y, z. This value is 87.6% of the total stabilization energy (−105.5 kJ mol−1). The contribution of pair V to the stabilization energy of the structure is ca. 3.5%. Electrostatic repulsion between fluorine atoms is compensated by the dispersive effect provided by the complete structure.

3.2.1 Overall structure of 1

The overall structure of 1 is readily conceived to be composed of chains of molecules, formed from the N1–H1⋯O4 and C8–H8⋯O4 hydrogen bonds, which are linked into nearly planar sheets by C7–H7⋯F21 hydrogen bonds. These sheets, or layers, are then linked by F23⋯F23 and π⋯π interactions into a layered 3-dimensional structure (Fig. 4).

Fig. 4: The packing of the molecules of 1. Alternating layers of molecules, formed from N1–H1⋯O4, C8–H8⋯O4 and C7–H7⋯F21 hydrogen bonds are by linked by F⋯F contacts and by π⋯π interactions. Only a few of the linkages of the layers have been drawn.
Fig. 4:

The packing of the molecules of 1. Alternating layers of molecules, formed from N1–H1⋯O4, C8–H8⋯O4 and C7–H7⋯F21 hydrogen bonds are by linked by F⋯F contacts and by π⋯π interactions. Only a few of the linkages of the layers have been drawn.

3.3 Compound 2

The intermolecular interactions in crystals of compound 2 are C7–H7⋯N1 and C42–H42A⋯F21 hydrogen bonds, along with C41–H41A⋯π and π⋯π interactions. The symmetry operations for these interactions are listed in Table 4. A view of the Hirshfeld surface is shown in Fig. 5a: the contacts indicated by the red areas on the surface have been designated. The FP plot is shown in Fig. 5b. Percentages of atom⋯atom close contacts, obtained from analyses of the FP plots are shown in Table 2. As with compound 1, the highest percentage atom-atom contacts are the H⋯F/F⋯H contacts at 37.2%, which is slightly lower than that for compound 1, as is also the sum of the percentages of all fluorine contacts. Significantly, the second highest contacts in 2 are H⋯H at 29.0%, much higher than that in compound 1: the next highest percentage in 2 is that for H⋯O/O⋯H at 14.2%.

Fig. 5: Compound 2. (a) View of the Hirshfeld surface showing the various contact sites, (b) FP plot: the inner spikes are due to F⋯H/H⋯F contacts and the outer ones due to the N⋯H/H⋯N contacts.
Fig. 5:

Compound 2. (a) View of the Hirshfeld surface showing the various contact sites, (b) FP plot: the inner spikes are due to F⋯H/H⋯F contacts and the outer ones due to the N⋯H/H⋯N contacts.

The majority of the stabilization energy of the structure, according to Pixel calculations, comes from six distinct pairs of molecules (Fig. 6). Table 2 lists the calculated energies. These pairs are:

Fig. 6: Compound 2. Pairs of molecules calculated by the Pixel approach to be the most significant contributors to the energy: in each case the green reference molecule is at x, y, z and the paired molecules in element colours is at a designated site: other molecules are drawn in grey. (a) pair, I, is a C41–H41A⋯π linked dimer: partner molecule at 1–x, −y, 1–z, (b) pair II; there are no close contacts between the pairs, the grey coloured molecules act as conduits: the partner molecule is at −x, 1–y, 1–z, (c) pairs IIIa and IIIb are within a C6 chain involving C7–H7⋯N1 hydrogen bonds: partner molecules at −x, 0.5+y, 0.5–z and −x, −0.5+y, 0.5–z for IIIa and IIIb, respectively, (d) pairs, IVa and IVb are within a C9 chain involving C42–H42A⋯F21 hydrogen bonds: partner molecules are at 1–x, 0.5+y, 1.5–z and 1–x, −0.5+y, 1.5–z, respectively.
Fig. 6:

Compound 2. Pairs of molecules calculated by the Pixel approach to be the most significant contributors to the energy: in each case the green reference molecule is at x, y, z and the paired molecules in element colours is at a designated site: other molecules are drawn in grey. (a) pair, I, is a C41–H41A⋯π linked dimer: partner molecule at 1–x, −y, 1–z, (b) pair II; there are no close contacts between the pairs, the grey coloured molecules act as conduits: the partner molecule is at −x, 1–y, 1–z, (c) pairs IIIa and IIIb are within a C6 chain involving C7–H7⋯N1 hydrogen bonds: partner molecules at −x, 0.5+y, 0.5–z and −x, −0.5+y, 0.5–z for IIIa and IIIb, respectively, (d) pairs, IVa and IVb are within a C9 chain involving C42–H42A⋯F21 hydrogen bonds: partner molecules are at 1–x, 0.5+y, 1.5–z and 1–x, −0.5+y, 1.5–z, respectively.

  1. Pair I is a C41–H41A⋯π linked dimer (Fig. 6a), with molecules at x, y, z (green coloured molecule) and 1–x, –y, 1–z (atom coloured molecule).

  2. Pair II is illustrated in Fig. 6b: the two molecules involved are at x, y, z (green coloured molecule) and −x, 1–y, 1–z (element coloured molecule). Although these molecules do not exhibit direct atom···atom close contacts, each pair provides a significant contribution to the overall structural stabilization energy of −39.5 kJ mol−1. The Pixel calculations can indicate two molecules, that are not “connected” by such interactions as H bonds, π⋯π, C–H⋯π, but still make a significant contribution to the stabilization of the structure, due to the electronic stabilization that arises from the possibility of delocalization via another molecule (i.e. the grey coloured molecule) that acts as a bridge between the pairs that are not virtually in contact.

  3. Pairs IIIa and IIIb are within a zig-zag C6 chain, propagated in the direction of the b axis derived from C7–H7⋯N1 hydrogen bonds (Fig. 6c): symmetry operations: x, y, z (green sticks) and −x, 0.5+y, 0.5–z and −x, −0.5+y, 0.5–z (atom coloured molecules) for pairs IIIa and IIIb, respectively.

  4. Pairs IVa and IVb are also within a zig-zag C6 chain, propagated in the direction of the b axis, generated from C42–H42A hydrogen bonds (Fig. 6d): partner molecules are at x, y, z (green coloured) and at 1–x, 0.5+y, 1.5–z and 1–x, −0.5+y, 1.5–z (atom coloured molecules), respectively.

The calculated energy for each of these important pairs of molecules is listed in Table 3. The sum of the Etot energies of these pairs is −132.2 kJ mol−1, of which one half, −66.1 kJ mol−1, is associated with the common reference molecule at x, y, z. This value can be compared with the total calculated value by the program Pixel 3.1 of −93.7 kJ mol−1 (Table 2). The identified pairs contribute 70.5% of the total energy of the structure, of which 7.7% arise from contacts involving fluorine atoms, which are assumed to be predominately of a dispersive nature.

3.3.1 Overall structure of 2

The chains formed from the C7–H7⋯N1 and the C42–H42A⋯F211 hydrogen bonds shown in Fig. 6c and d, respectively, are linked to form planar sheets composed entirely of R44(28) rings. The sheets are linked into a 3-dimensional array by combinations of π⋯π and C41–H41A⋯π interactions. A slice through the three dimensional structure is shown in Fig. 7.

Fig. 7: A view of part of a slice though the 3-dimensional structure of 2, illustrating the connection of the sheets formed from C42–H42A⋯F211 and C7–H7⋯N1 hydrogen bonds by C41–H41A⋯π and π⋯π interactions.
Fig. 7:

A view of part of a slice though the 3-dimensional structure of 2, illustrating the connection of the sheets formed from C42–H42A⋯F211 and C7–H7⋯N1 hydrogen bonds by C41–H41A⋯π and π⋯π interactions.

3.4 Compound 3

The intermolecular interactions in crystals of compound 3 are N–H⋯X (X=N, F) and C–H⋯X (X=N, F) hydrogen bonds and two distinct π⋯π interactions (Fig. 8). The π⋯π interaction, termed a, is stronger than the other one of this type, b, as shown by the greater overlap of the π systems of the molecules (Fig. 8) and by the shorter Cg⋯Cg separation: 3.770 and 3.94 Å, respectively, in a and b.

Fig. 8: Compound 3. Overlap of the molecules in the π⋯π interactions, a and b.
Fig. 8:

Compound 3. Overlap of the molecules in the π⋯π interactions, a and b.

Views of the Hirshfeld surface and the FP plot are shown in Fig. 9. Percentages of atom⋯atom close contacts, obtained from analyses of the FP plots are provided in Table 2. As with compound 1, the highest percentage atom-atom contact is of the H⋯F/F⋯H type at 47.2%. Considering that there are two trifluoromethyl groups, it is not surprising that this compound shows the highest percentage of all three compounds studied here. All the fluorine close contacts sum to 60.7%. Interestingly, the percentage of F⋯F contacts is calculated to be 12.2%, despite there being no F⋯F contacts within the accepted sum of the contact radii, although a number of these contacts appear just outside this sum. It does suggest that distances out of this sum must still have some significance. For an organic molecule like 3 the percentage of H⋯H close contacts is low, as in 1.

Fig. 9: Compound 3. (a)–(c) Three views of the Hirshfeld surface of 3 with sites of close contact indicated by red areas, (d) The FP plot: the blue spikes ending at de; di (1.4; 1.1) and (1.1; 1.4) are due to the F⋯H/H⋯F contacts and the outer blue spikes ending at de; di (1.2; 0.8) and (0.8; 1.2) are due to the H⋯N/N⋯H contacts.
Fig. 9:

Compound 3. (a)–(c) Three views of the Hirshfeld surface of 3 with sites of close contact indicated by red areas, (d) The FP plot: the blue spikes ending at de; di (1.4; 1.1) and (1.1; 1.4) are due to the F⋯H/H⋯F contacts and the outer blue spikes ending at de; di (1.2; 0.8) and (0.8; 1.2) are due to the H⋯N/N⋯H contacts.

The total energy of the structure of 3 is shown in Table 2. The majority of the stabilization energy of the structure, according to Pixel calculations, comes from eight distinct pairs of molecules, listed in Table 3.

These pairs are:

  1. Pair I (Fig. 10a) is a strong π⋯π-linked dimer, A (Fig. 8a) with additional linkages via C5–H5⋯N44 and C41–H41⋯N44 hydrogen bonds: symmetry operations of the two participating molecules are x, y, z and 1–x, y, 0.5–z (atom coloured molecule).

  2. Pair II (Fig. 10b) involves molecules at x, y, z and 0.5–x, 0.5–y, −z (atom coloured molecule). The weaker π⋯π interaction, b (Fig. 8b) is a weak link between these molecules. However, a significant contribution to the overall lattice stabilization energy arises via the grey molecules, which as mentioned above provides pathways for electronic stabilization. The links between the pair and the grey coloured molecules involve C44–H44A⋯F811, C44–H44A⋯N1, C44–H44A⋯F213, C5–H5⋯N44 and N41–H41⋯N44 hydrogen bonds.

  3. Pairs IIIa and IIIb with molecules involved in pair IIIA located at x, y, z and 0.5+x, 0.5–y, 0.5+z, and those in pair IIIb at x, y, z and −0.5+x, 0.5–y, −0.5+z. The pairs IIIa and IIIb are located within a zig-zag chain of molecules linked by N4–H44A⋯N1 and potentially three N44–H44A⋯F213, N44–H44A⋯F811 and N44–H44B⋯F811 hydrogen bonds (Fig. 10c). The strongest hydrogen bond involved in the chain is N44–H44A⋯N1, which on its own generates a C(9) chain. The three N–H⋯F hydrogen interactions are, at best, weak due to H⋯F separations of 2.66, 2.61 and 2.67 Å, respectively, close to or at the sum of the contact radii of 2.67 Å. Furthermore the N–H⋯F angles of the latter two are both less than 107°. If all four interactions are considered, then the chain can be designated a R21(4),R21(5),R21(6), C(10), C(10), C(11), C(11) chain.

  4. Pair IV does not have close contacts, but as in pair II, adjacent molecules, drawn in grey in Fig. 10d are considered to act as conduits for the electron delocalisation (see above). As shown in Fig. 10d, there are many connections between the grey coloured molecules and each of the molecules in pair IV.

  5. Pair V, a symmetric dimer, with a R22(10) ring, is directly connected by pairs of C7–H7⋯F813 interactions. Symmetry operations for the pair of molecules are x, y, z (green sticks) and 1–x, 1–y, −z (atom coloured molecule).

  6. Pairs VIa and VIb appear in a C10 chain formed from C43–H43B⋯F811 hydrogen bonds: reference molecule at x, y, z, partner molecules at 0.5–x, 0.5+y, 0.5–z and 0.5–x, −0.5–y, 0.5–z, for VIa and VIb, respectively.

Fig. 10: Compound 3. Pairs of molecuels calculated by the Pixel approach to be the most significant contributors to the energy: in each case the green reference molecule is at x, y, z and the paired molecule in element colours at the designated site: additional molecules are drawn grey, (a) pair I, incorporating a π⋯π interaction, and N41–H41⋯N44 and C5–C5⋯N44 hydrogen bonds and paired molecule at 1–x, y, 0.5–z, (b) pair II, paired molecule at 0.5–x, 0.5–y, –z, (c) pairs IIIA and IIIB: paired molecules at 0.5+x, 0.5–y, 0.5+z (IIIA) and −0.5+x, 0.5–y, –0.5+z (IIIB), (d) pair IV, with paired molecule at 0.5–x, 0.5–y, −1–z, (e) pair V, a symmetric dimer, with a R22(10)${\rm{R}}_2^2(10)$ ring, formed from a pair of C7–H7⋯F813 interactions: paired molecule at 1–x, 1–y, –z, (f) pairs VIa and VIb, within a C10 chain formed from C43–H43B⋯F811 contacts, interactions of the molecule placed at x, y, z (green stick) with molecules at 0.5–x, 0.5+y, 0.5–z and 0.5–x, –0.5–y, 0.5–z for VIa and VIb, respectively.
Fig. 10:

Compound 3. Pairs of molecuels calculated by the Pixel approach to be the most significant contributors to the energy: in each case the green reference molecule is at x, y, z and the paired molecule in element colours at the designated site: additional molecules are drawn grey, (a) pair I, incorporating a π⋯π interaction, and N41–H41⋯N44 and C5–C5⋯N44 hydrogen bonds and paired molecule at 1–x, y, 0.5–z, (b) pair II, paired molecule at 0.5–x, 0.5–y, –z, (c) pairs IIIA and IIIB: paired molecules at 0.5+x, 0.5–y, 0.5+z (IIIA) and −0.5+x, 0.5–y, –0.5+z (IIIB), (d) pair IV, with paired molecule at 0.5–x, 0.5–y, −1–z, (e) pair V, a symmetric dimer, with a R22(10) ring, formed from a pair of C7–H7⋯F813 interactions: paired molecule at 1–x, 1–y, –z, (f) pairs VIa and VIb, within a C10 chain formed from C43–H43B⋯F811 contacts, interactions of the molecule placed at x, y, z (green stick) with molecules at 0.5–x, 0.5+y, 0.5–z and 0.5–x, –0.5–y, 0.5–z for VIa and VIb, respectively.

The calculated energies for each of these important pairs of molecules are listed in Table 3. The sum of the Etot energies is −309.9 kJ mol−1, of which one half, −154.95 kJ mol−1, is associated with the common reference molecule at x, y, z. This value can be compared with the total value of −156.6 kJ mol−1 listed in Table 2 as calculated by the program Pixel 3.1. In this structure, the amount of fluorine contacts is higher than in 1 and 2, due to the presence of an additional CF3 group. The energy associated with the fluorine close contacts sum to −55.6 kJ mol−1, which is ca. 35% of the total energy.

3.4.1 Overall structure of 3

The structure of 3 can be considered to be composed of one-molecule wide columns, linked by a series of N–H⋯F interactions into a three dimensional array (Fig. 11). The columns of molecules are formed from both π⋯π interactions, a and b, in combination with N44–H44B⋯N1, N41–H41⋯N44, C5–H5⋯N44, N44–H44A⋯F811, N44–H44B⋯F811 and N44–H44A⋯F213 hydrogen bonds, i.e. utilizing pairs I and II. A side-on view of the column is shown in Fig. 11a, while Fig. 11b gives the view looking down the column. Such columns are linked by C3–H3⋯F211, C7–H7⋯F813 and C43–H43B⋯F2213 hydrogen bonds (Fig. 11c).

Fig. 11: Compound 3. (a) A side-on view of a part of a one-molecule wide column formed from linking the pairs I and II shown in Fig. 10a and b, (b) view looking down a column, (c) view of the packing of the columns connected by fluorine close contacts.
Fig. 11:

Compound 3. (a) A side-on view of a part of a one-molecule wide column formed from linking the pairs I and II shown in Fig. 10a and b, (b) view looking down a column, (c) view of the packing of the columns connected by fluorine close contacts.

3.5 Fluorine close contacts in other trifluoromethylated compounds

To provide further data on fluorine close contacts in trifluoromethylated compounds, Hirshfeld surface analyses were conducted on a number of compounds, whose crystal structures had been reported by us [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56] in earlier structural/biological studies. The Hirshfeld surface analyses utilized the previously reported cifs. In addition, fluorine close-contacts in four mefloquinium salts, already published [30], [31], [32], [57], have also been considered, as have the data for compounds, 13. Data for mono- and bis(trifluoromethyl) derivatives is listed in Tables 6 and 7, respectively. These tables list the percentages of all fluorine ⋯atom close contacts as well as a selected number of common atom⋯atom contacts found generally in organic molecules. While we acknowledge that the basis for the choice of these compounds is a selective one, i.e. trifluoromethylated compounds we had previously worked with, we feel that a good cross section of trifluoromethylated compounds are covered in this survey. The range of total fluorine⋯atom contacts in Tables 6 and 7 extends from 20 to 62%. With a limited number of samples covering a wide range of molecule types, and a differing number of other acceptor/donor atoms present in these molecules, a detailed analysis of the range of fluorine⋯atom contacts of 20–62% is somewhat premature. However, looking at the values for the mono-trifluoromethyl compounds in Table 6, it appears, superficially at least, that the number of hydrogen atoms of all types, i.e. alkyl, aryl, hydroxyl, amino, etc. present in the molecules has an influence. Thus MOKNES with 30 hydrogen atoms has the lowest fluorine⋯atom contacts at 21.0%, while MAZZIX, with just two hydrogen atoms, has the highest percentage of fluorine⋯atom contacts at 64.9%. In between MOKNES and MAZZIX in Table 6, there are 12 compounds, having between 3 and 12 hydrogens, exhibiting a range of fluorine close contacts from 29.5 to 50.9%, but without an obvious correlation.

Table 6:

Fluorine close contacts in mono(trifluoromethylated) compounds: comparisons with selected atom⋯atom contacts.

CompoundCCDC codes [references]Percentage of atom⋯atom contacts
Individual fluorine-atom contactsTotal % of F contactsSelected other atom-aton contacts
F⋯FF⋯O/O⋯FF⋯C/C⋯FF⋯H/H⋯FN⋯F/F⋯NF⋯X/X⋯FO⋯H/H⋯OH⋯HC⋯CC⋯H/H⋯C
MOKZES

718159

[44]
1.30.22.517.00.021.010.751.00.711.5
ZEFLII

1453086

[45]
3.40.80.225.129.518.322.16.118.6
PAJCUZ

254943

[46]
0.9

0.0
3.1

3.1
2.0

1.5
26.8

27.0
0.0

0.0
32.815.3

16.5
22.4

22.7
10.1

9.2
13.8

14.7
SASYAN

282187

[47]
7.10.07.019.50.033.67.813.06.96.3
TITTUM

679958

[48]
5.90.01.724.32.834.77.121.89.68.7
VENKEF

621462

[51]
9.43.75.618.01.10.3b38.117.71.20.86.8
EFAYAL

182032

Mol 1

Mol 2

[52]




13.6

15.2




1.3

1.2




0.2

0.2




24.1

22.9




0.0

0.0




39.2

39.5




26.5

24.5




9.5

11.4




8.3

8.3




6.6

6.6
This study

1895507
3.50.10.737.20.041.50.229.07.012.9
TERPAI

630053

[51]
2.00.73.928.86.12.0c43.54.94.92.35.1
TITTOG

679957

[48]
3.12.63.424.90.643.66.021.77.410.7
GEHSIW

612451

[52]
23.78.21.19.62.144.723.64.07.08.5
This study

1895504
4.60.31.740.40.047.014.213.39.610.6
PAJBEI

254930

[53]
12.91.71.534.80.050.90.06.31.46.7
MAZZIX

296350

[54]
18.15.814.111.415.5d64.93.10.01.3
  1. aX=Br; bX=I; cX=Cl; dX=S.

Table 7:

Percentages of fluorine-atom and selected other atom⋯atom close contacts in bis(trifluoromethylated) compounds.

CompoundCCDC codes [ref]Percentage of atom⋯atom contacts
Individual fluorine⋯atom contactsTotal % of F contactsSelected other atom⋯atom contacts
F⋯FF⋯O/O⋯FF⋯C/C⋯FF⋯H/H⋯FN⋯F/F⋯NF⋯X/X⋯FO⋯H/H⋯OH⋯HC⋯CC⋯H/H⋯C
FUQMEJ

153346

[55]
15.35.89.616.71.131.819.53.40.71.4
ELAMAH

1436547

[56]
7.20.42.528.70.3b39.014.429.30.87.6
AYEPIF

1510084

[30]
7.64.623.11.44.6b41.319.231.22.39.6
HISFEX

1879700

[31]
7.75.425.41.02.7b42.710.212.40.33.4
XACQOO

1053234

9R*,10S*,17S*, N3R*-stereoisomer

[57]
3.06.83.331.91.11.9a48.013.120.12.58.7
XAGQUU

1053712

9R*,10S*,17R*, N3S*-stereoisomer

[57]
1.93.62.337.20.33.4a 48.716.316.33.07.5
XAGREF

1063830

[57]
1.63.10.444.50.049.61.726.31.816.0
1895506

COMPOUND, 3, This study

1895506
12.20.747.20.660.117.27.27.7
VEZRAW

1844854

[32]
10.57.040.80.33.1b61.711.211.90.63.5
  1. aX=S; bX=Cl.

4 Conclusions

The data in Tables 6 and 7 provide quantitative evidence for the strong propensity of fluorine to form intermolecular close contacts with many different atoms thereby aiding the binding or interaction of trifluoromethylated compounds with organic material. The analysis of the presented data indicates that energy resulting from interactions involving the fluorine atoms in the trifluoromethyl groups makes considerable contributions to the structural stability. In spite of the electronegativity of the fluorine atom, the element has a strong tendency to make intermolecular close contacts, that are mainly stabilised by dispersive effects rather than by polarization or Coulombic effects. In fact, in the trifluoromethyl group, the electronegative fluorine atom is able to withdraw electron density from the carbon atom, making the carbon more electropositive compared to the situation in a methyl group. This feature could be particularly important in the stabilisation of the F⋯F interactions, where the dispersion term clearly overcomes the electronic repulsion between the fluorine atoms.

5 Supporting information

CCDC 1895507, 1895505 and 1895506, for compounds 13, respectively, contain the Supplementary crystallographic data for this paper. These data can be obtained free of charge from The Cambridge Crystallographic Data Centre viawww.ccdc.cam.ac.uk/data_request/cif.

The details of the crystal structure determinations in cif format are also available in the online version (DOI: 10.1515/znb-2019-0109).

Acknowledgements

The authors thank the National Crystallographic Service, University of Southampton, UK, for the data collection, and for their help and advice. LRG thanks the Portuguese Foundation for Science and Technology (FCT) UID/Multi/04546/2013 for support.

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Received: 2019-06-10
Accepted: 2019-09-20
Published Online: 2019-11-02
Published in Print: 2019-12-18

©2019 Walter de Gruyter GmbH, Berlin/Boston

Articles in the same Issue

  1. Frontmatter
  2. In this Issue
  3. Research Articles
  4. Electron densities of two cyclononapeptides from invariom application
  5. Crystal structures, Hirshfeld surface analysis and Pixel energy calculations of three trifluoromethylquinoline derivatives: further analyses of fluorine close contacts in trifluoromethylated derivatives
  6. Synthesis and antifungal activities of 3-substituted phthalide derivatives
  7. Unexpected isolation of a cyclohexenone derivative
  8. Preparation and structure of 4-(dimethylamino)thiopivalophenone – intermolecular interactions in the crystal
  9. A new binuclear NiII complex with tetrafluorophthalate and 2,2′-bipyridine ligands: synthesis, crystal structure and magnetic properties
  10. Two mononuclear zinc(II) complexes constructed by two types of phenoxyacetic acid ligands: syntheses, crystal structures and fluorescence properties
  11. Investigation of the reactivity of 4-amino-5-hydrazineyl-4H-1,2, 4-triazole-3-thiol towards some selected carbonyl compounds: synthesis of novel triazolotriazine-, triazolotetrazine-, and triazolopthalazine derivatives
  12. Synthesis and structural characterization of a Ni(II) coordination polymer with a tripodal 4-imidazolyl-functional ligand
  13. Crystal structure and photocatalytic degradation properties of a new two-dimensional zinc coordination polymer based on 4,4ʹ-oxy-bis(benzoic acid)
  14. Intermetallics of the types REPd3X2 and REPt3X2 (RE=La–Nd, Sm, Gd, Tb; X=In, Sn) with substructures featuring tin and In atoms in distorted square-planar coordination
  15. A 119Sn Mössbauer-spectroscopic characterization of the diamagnetic birefringence material Sn2B5O9Cl
  16. Synthesis, crystal structure and photoluminescence of the salts Cation+ [M(caffeine)Cl] with Cation+=NnBu4+, AsPh4+ and M==Zn(II), Pt(II)
  17. Synthesis and characterization of two bifunctional pyrazole-phosphonic acid ligands
  18. A β-ketoiminato palladium(II) complex for palladium deposition
  19. Orthoamide und Iminiumsalze, XCVIa. Push-pull-substituierte 1,3,5-Hexatriene aus Orthoamiden von Alkincarbonsäuren und Birckenbach-analogen Acetophenonen
  20. Orthoamide und Iminiumsalze, IIICa. Weitere Ergebnisse bei der Umsetzung von Orthoamiden der Alkincarbonsäuren mit CH2- und CH2/NH-aciden Verbindungen
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