Startseite Naturwissenschaften The crystal structure of t-butyl 7-[4-(4-fluorophenyl)-2-[(methanesulfonyl)(methyl)amino]-6-(propan-2-yl)pyrimidin-5-yl]-3,5-dihydroxyhept-6-enoate, C26H36FN3O6S
Artikel Open Access

The crystal structure of t-butyl 7-[4-(4-fluorophenyl)-2-[(methanesulfonyl)(methyl)amino]-6-(propan-2-yl)pyrimidin-5-yl]-3,5-dihydroxyhept-6-enoate, C26H36FN3O6S

  • Jing Zou , Lv-Qing Sheng , Xin-Xin Xu , Rou-Han Xu und Cheng-Jun Jiang ORCID logo EMAIL logo
Veröffentlicht/Copyright: 5. Februar 2024

Abstract

C26H36FN3O6S, monoclinic, P21 (no. 4), a = 10.6615(4) Å, b = 8.7470(3) Å, c = 29.4342(11) Å, α = 9°, β = 95.6130(10)°, γ = 90°, V = 2731.76(17) Å3, Z = 4, R gt (F) = 0.0439, w R ref (F2) = 0.1083, T = 170 K.

CCDC no.: 2304755

The asymmetric unit of the title crystal structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless needle
Size: 0.18 × 0.04 × 0.03 mm
Wavelength: GaKα radiation (1.34139 Å)
μ: 0.97 mm−1
Diffractometer, scan mode: Bruker D8 Venture, φ and ω
θmax, completeness: 61.0°, >99 %
N(hkl)measured, N(hkl)unique, Rint: 56,488, 12,398, 0.055
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 11,205
N(param)refined: 686
Programs: Bruker [1], Olex2 [2], Shelx [3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
S1 0.01127 (7) −0.33038 (8) 0.81540 (2) 0.02467 (15)
O1 0.1449 (2) −0.3330 (3) 0.81627 (7) 0.0334 (5)
N1 −0.0256 (2) −0.2325 (3) 0.86027 (8) 0.0267 (5)
C1 −0.0498 (3) −0.2301 (4) 0.76688 (10) 0.0323 (7)
H1A −0.005673 −0.132218 0.765378 0.049*
H1B −0.139901 −0.211342 0.768494 0.049*
H1C −0.038163 −0.290427 0.739560 0.049*
O2 −0.0560 (3) −0.4715 (3) 0.81710 (8) 0.0433 (6)
N2 0.0463 (2) −0.0662 (3) 0.91891 (7) 0.0235 (5)
C2 −0.1461 (3) −0.2613 (4) 0.87868 (11) 0.0376 (8)
H2A −0.214359 −0.213912 0.858785 0.056*
H2B −0.144136 −0.217412 0.909379 0.056*
H2C −0.160508 −0.371717 0.880189 0.056*
F1 0.40347 (19) 0.3461 (2) 0.71198 (6) 0.0414 (5)
O3 0.4315 (2) 0.4645 (3) 0.97091 (7) 0.0372 (5)
H3 0.482773 0.532163 0.981028 0.056*
N3 0.1004 (2) −0.0251 (3) 0.84337 (7) 0.0204 (5)
C3 0.0449 (3) −0.1013 (3) 0.87478 (9) 0.0209 (5)
O4 0.5370 (2) 0.7433 (2) 0.95895 (7) 0.0325 (5)
H4 0.556402 0.818342 0.975995 0.049*
C4 0.1146 (3) 0.0564 (3) 0.93309 (9) 0.0205 (5)
O5 0.5488 (3) 1.0824 (3) 0.93254 (7) 0.0395 (6)
C5 0.1824 (2) 0.1432 (3) 0.90349 (8) 0.0189 (5)
O6 0.6069 (2) 1.0633 (2) 0.86095 (7) 0.0297 (5)
C6 0.1721 (2) 0.0960 (3) 0.85770 (9) 0.0179 (5)
C7 0.1203 (3) 0.0896 (3) 0.98400 (9) 0.0252 (6)
H7 0.141872 0.200074 0.988726 0.030*
C8 −0.0049 (4) 0.0607 (5) 1.00303 (12) 0.0454 (9)
H8A −0.070903 0.121089 0.985871 0.068*
H8B 0.001460 0.090509 1.035265 0.068*
H8C −0.025925 −0.048175 1.000234 0.068*
C9 0.2254 (4) −0.0040 (5) 1.00830 (11) 0.0499 (10)
H9A 0.204873 −0.112896 1.005133 0.075*
H9B 0.235405 0.023540 1.040727 0.075*
H9C 0.304147 0.016730 0.994810 0.075*
C10 0.2374 (2) 0.1666 (3) 0.82056 (8) 0.0181 (5)
C11 0.2475 (3) 0.3238 (3) 0.81531 (8) 0.0207 (5)
H11 0.215708 0.389964 0.837079 0.025*
C12 0.3035 (3) 0.3864 (3) 0.77856 (9) 0.0239 (6)
H12 0.310452 0.493883 0.774903 0.029*
C13 0.3481 (3) 0.2868 (4) 0.74800 (9) 0.0255 (6)
C14 0.3397 (3) 0.1306 (3) 0.75136 (9) 0.0248 (6)
H14 0.372171 0.065504 0.729470 0.030*
C15 0.2823 (3) 0.0710 (3) 0.78782 (9) 0.0215 (5)
H15 0.273442 −0.036587 0.790534 0.026*
C16 0.2678 (3) 0.2684 (3) 0.92228 (8) 0.0210 (5)
H16 0.352704 0.241272 0.931673 0.025*
C17 0.2365 (3) 0.4126 (3) 0.92704 (9) 0.0250 (6)
H17 0.152423 0.441303 0.917041 0.030*
C18 0.3239 (3) 0.5352 (3) 0.94710 (9) 0.0260 (6)
H18 0.279345 0.597322 0.969113 0.031*
C19 0.3640 (3) 0.6400 (3) 0.90953 (9) 0.0222 (6)
H19A 0.287661 0.670939 0.889789 0.027*
H19B 0.418006 0.580720 0.890425 0.027*
C20 0.4352 (3) 0.7843 (3) 0.92624 (9) 0.0228 (6)
H20 0.376597 0.854161 0.940822 0.027*
C21 0.4843 (3) 0.8648 (4) 0.88576 (9) 0.0289 (6)
H21A 0.544129 0.795866 0.872199 0.035*
H21B 0.412652 0.883095 0.862366 0.035*
C22 0.5491 (3) 1.0145 (3) 0.89694 (9) 0.0251 (6)
C23 0.6768 (3) 1.2097 (4) 0.86169 (10) 0.0295 (6)
C24 0.5924 (3) 1.3421 (4) 0.87142 (11) 0.0349 (7)
H24A 0.513412 1.335353 0.851493 0.052*
H24B 0.634899 1.438559 0.865676 0.052*
H24C 0.574218 1.338277 0.903395 0.052*
C25 0.7907 (4) 1.1992 (5) 0.89635 (16) 0.0562 (11)
H25A 0.763109 1.187992 0.926975 0.084*
H25B 0.841355 1.292297 0.895110 0.084*
H25C 0.841586 1.110330 0.889467 0.084*
C26 0.7148 (5) 1.2197 (5) 0.81342 (14) 0.0620 (13)
H26A 0.769222 1.132864 0.807693 0.093*
H26B 0.760634 1.315349 0.809770 0.093*
H26C 0.639229 1.217270 0.791638 0.093*
S1A 0.90699 (7) 1.33079 (8) 0.68715 (2) 0.02486 (16)
O1A 0.9714 (3) 1.4738 (3) 0.68336 (8) 0.0420 (6)
N1A 0.9353 (2) 1.2311 (3) 0.64112 (8) 0.0290 (6)
C1A 0.9807 (3) 1.2298 (4) 0.73372 (10) 0.0325 (7)
H1AA 0.969591 1.285088 0.762002 0.049*
H1AB 1.070849 1.219792 0.730273 0.049*
H1AC 0.942967 1.127875 0.734957 0.049*
O2A 0.7747 (2) 1.3331 (3) 0.69104 (7) 0.0324 (5)
N2A 0.8661 (2) 1.0527 (3) 0.58614 (7) 0.0231 (5)
C2A 1.0172 (4) 1.2953 (5) 0.60877 (13) 0.0528 (11)
H2AA 0.966160 1.353054 0.585159 0.079*
H2AB 1.061009 1.212242 0.594522 0.079*
H2AC 1.079246 1.363580 0.625005 0.079*
O3A 0.5911 (2) 0.4038 (2) 0.51556 (6) 0.0352 (5)
H3A 0.579785 0.468642 0.494509 0.053*
N3A 0.8142 (2) 1.0268 (3) 0.66251 (7) 0.0188 (4)
C3A 0.8673 (3) 1.0969 (3) 0.62933 (9) 0.0208 (5)
F1A 0.5382 (2) 0.6414 (2) 0.79961 (6) 0.0392 (5)
O4A 0.4911 (3) 0.1407 (3) 0.54152 (7) 0.0410 (6)
H4A 0.521810 0.198981 0.522798 0.062*
C4A 0.7988 (3) 0.9275 (3) 0.57405 (8) 0.0205 (5)
O5A 0.2559 (3) 0.0198 (4) 0.58210 (9) 0.0598 (8)
C5A 0.7307 (2) 0.8476 (3) 0.60524 (8) 0.0180 (5)
O6A 0.3400 (2) −0.0867 (2) 0.64766 (7) 0.0284 (4)
C6A 0.7444 (2) 0.9032 (3) 0.65029 (8) 0.0172 (5)
C7A 0.8014 (3) 0.8768 (4) 0.52489 (9) 0.0280 (6)
H7A 0.726222 0.810650 0.516393 0.034*
C8A 0.7970 (3) 1.0125 (4) 0.49232 (9) 0.0366 (8)
H8AA 0.721946 1.074158 0.496037 0.055*
H8AB 0.793674 0.975414 0.460810 0.055*
H8AC 0.872646 1.075301 0.499168 0.055*
C9A 0.9204 (4) 0.7823 (5) 0.52097 (12) 0.0525 (10)
H9AA 0.994888 0.845992 0.528990 0.079*
H9AB 0.921186 0.745294 0.489572 0.079*
H9AC 0.921459 0.694882 0.541846 0.079*
C10A 0.6846 (2) 0.8304 (3) 0.68858 (8) 0.0173 (5)
C11A 0.6777 (2) 0.6726 (3) 0.69317 (8) 0.0201 (5)
H11A 0.706426 0.608457 0.670295 0.024*
C12A 0.6294 (3) 0.6078 (3) 0.73079 (9) 0.0238 (6)
H12A 0.625623 0.499959 0.734242 0.029*
C13A 0.5871 (3) 0.7043 (3) 0.76297 (9) 0.0239 (6)
C14A 0.5925 (3) 0.8613 (3) 0.75988 (9) 0.0240 (6)
H14A 0.563006 0.924347 0.782849 0.029*
C15A 0.6423 (3) 0.9249 (3) 0.72236 (9) 0.0200 (5)
H15A 0.647618 1.032828 0.719555 0.024*
C16A 0.6403 (3) 0.7235 (3) 0.59071 (9) 0.0219 (5)
H16A 0.554675 0.741904 0.595333 0.026*
C17A 0.6647 (3) 0.5913 (3) 0.57224 (9) 0.0248 (6)
H17A 0.749810 0.569344 0.567612 0.030*
C18A 0.5669 (3) 0.4727 (3) 0.55797 (9) 0.0227 (6)
H18A 0.482345 0.523062 0.554054 0.027*
C19A 0.5638 (3) 0.3456 (3) 0.59289 (8) 0.0245 (6)
H19C 0.550045 0.391059 0.622803 0.029*
H19D 0.646845 0.293956 0.596224 0.029*
C20A 0.4620 (3) 0.2272 (3) 0.58046 (9) 0.0221 (5)
H20A 0.379397 0.280194 0.573206 0.026*
C21A 0.4511 (3) 0.1154 (4) 0.61903 (9) 0.0273 (6)
H21C 0.527952 0.051247 0.622394 0.033*
H21D 0.448271 0.173800 0.647720 0.033*
C22A 0.3381 (3) 0.0122 (4) 0.61315 (10) 0.0282 (6)
C23A 0.2406 (3) −0.2036 (3) 0.65071 (10) 0.0264 (6)
C24A 0.2400 (5) −0.3104 (5) 0.61097 (15) 0.0631 (13)
H24D 0.226138 −0.252239 0.582471 0.095*
H24E 0.172225 −0.385526 0.612334 0.095*
H24F 0.321170 −0.363511 0.612089 0.095*
C25A 0.1153 (4) −0.1246 (5) 0.65329 (15) 0.0542 (11)
H25D 0.122850 −0.050069 0.678276 0.081*
H25E 0.051059 −0.200640 0.658874 0.081*
H25F 0.090766 −0.071863 0.624410 0.081*
C26A 0.2790 (4) −0.2837 (5) 0.69517 (13) 0.0499 (10)
H26D 0.362055 −0.330588 0.693968 0.075*
H26E 0.217067 −0.363157 0.700267 0.075*
H26F 0.282757 −0.209507 0.720215 0.075*

1 Source of materials

The t-butyl 7-[4-(4-fluorophenyl)-2-[(methanesulfonyl)(methyl)amino]-6-(propan-2-yl)pyrimidin-5-yl]-3,5-dihydroxyhept-6-enoate (103 mg, 0.1 mmol) was dissolved in a solution of 1.4 ml methanol and 0.6 ml deionized water. The resulting mixture was stirred and dissolved in a constant temperature water bath at 50 °C to obtain a clear solution, which was filtered and placed in a 10 ml glass bottle, the film was covered with a puncture hole. The filtrate was slowly evaporated at room temperature. Crystals of the title compound were obtained after 2 days.

2 Experimental details

Using Olex2 [2], the structure was solved with the ShelXT [3] structure solution program and refined with the ShelXL [4] package. The H atoms were fixed, and Uiso were set to 1.2 times of all C(H) groups, C(H,H) groups and N(H,H) groups; 1.5 times of C(H,H,H,H) groups, O(H) groups and O(H,H) groups.

3 Comment

Rosuvastatin calcium (Crestor; AstraZeneca), the seventh drug in the statin class, was approved by the US FDA in August 2003 for the reduction of cholesterol levels in patients with hypercholesterolaemia [5]. It is a synthetic lipid lowering drug which is also used in the treatment of osteoporosis, Alzheimer disease and acute coronary syndromes [6]. The t-butyl 7-[4-(4-fluorophenyl)-2-[(methanesulfonyl)-(methyl)amino]-6-(propan-2-yl)pyrimidin-5-yl]-3,5-dihydroxyhept-6-enoate is the final rosuvastatin precursor [7]. However, no single crystal structure was reported. The title crystal skeleton consists of a benzene ring and a nitrogen heterocyclic ring [8]. There are some inter- and intramolecular hydrogen bonds.


Corresponding author: Cheng-Jun Jiang, School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Liuhe Road 318#, Hangzhou, China, E-mail:

Funding source: National undergraduate innovation and entrepreneurship training program

Award Identifier / Grant number: Grant No. 202311057021

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission. We would also like to thank Mr Jiyong Liu from the Chemistry Instrumentation Center Zhejiang University for X-ray crystallographic analysis.

  2. Research funding: National undergraduate innovation and entrepreneurship training program (Grant No. 202311057021).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2023-11-02
Accepted: 2023-12-28
Published Online: 2024-02-05
Published in Print: 2024-04-25

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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  35. The crystal structure of (Z)-4-amino-N-(1-(4-hydroxyphenyl)propylidene)benzohydrazide, C16H17N3O2
  36. The crystal structure of diethyl 1,4-dihydro-2,6-dimethyl-4-(3-cyanophenyl)-3,5-pyridinedicarboxylate, C20H22N2O4
  37. Crystal structure of 3-(5-((4-(difluoromethoxy)phenyl) sulfonyl)-3,4,5,6-tetrahydropyrrolo[3,4-c]pyrrol-2(1H)-yl) oxetane-3-carboxamide, C17H19F2N3O5S
  38. Crystal structure of 2-((2,6-dichloro-4-(3,5-dimethylisoxazol-4-yl)phenyl)amino)-N-(2-(4-methylpiperazin-1-yl)ethyl)benzamide hydrate, C25H37Cl2N5O6
  39. Crystal structure of 3-(benzo[d]thiazol-2-yl)-5-bromo-2-hydroxybenzaldehyde, C14H8BrNO2S
  40. Crystal structure of 3-(difluoromethyl)-1-methyl-N-(pyridin-2-yl)-1H-pyrazole-4-carboxamide, C11H10F2N4O
  41. Crystal structure of 3-(2-ethoxy-2-oxoethyl)-1-isopropyl-1H-imidazol-3-ium hexafluoridophosphate(V), C20H34F12N4P2
  42. Crystal structure of ethyl 5,6-dichloro-2-methyl-2,3-dihydro-1 H-benzo[d]imidazole-2-carboxylate, C11H12Cl2N2O2
  43. The crystal of structure of (OC-6-22)-pentakis(acetonitrile)bromidoruthenium(II)bromide monohydrate, C10H15Br2N5Ru
  44. Crystal structure of (2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(((4aS,5R,6S)-1-oxo-5-vinyl-4,4a,5,6-tetrahydro-1H,3H-pyrano[3,4-c]pyran-6-yl)oxy)tetrahydro-2H-pyran-3-yl 2,3-dihydroxybenzoate hydrate, C23H26O12·H2O
  45. The crystal structure of (E)-4-amino-N′-(1-(4-fluorophenyl)propylidene)benzohydrazide, C16H16FN3O
  46. The crystal structure of 2′-(9H-carbazol-9-yl)-[1,1′-binaphthalen]-2-amine, C32H22N2
  47. Crystal structure of poly[μ3-diiodido-[μ2-di(1H-pyrazol-1-yl)methane-κ2N,N′)]dicopper(I)], C7H8Cu2I2N4
  48. Crystal structure of 3-amino-N′-hydroxy-1H-pyrazole-4-carboximidamide, C4H7N5O
  49. The crystal structure of 1,3-diacetyltetrahydroimidazo[4,5-d]imidazole-2,5(1H,3H)-dione, C8H10O4N4
  50. Crystal structure of catena-poly[aqua-(μ2-1,4-diazabicyclo[2.2.2]octane-k2N: N′)-bis(sorbato-κ1O)-copper(II), C18H28CuN2O5
  51. Crystal structure of catena-poly[triaqua-(μ2 -1-(4-carboxylatophenyl)-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ3O,O′:O′′)manganese(II)], C12H12N2O8Mn
  52. The crystal structure of [hexaaquamagnesium(II)] 4-[(pyridine-4-carbonyl)-amino]-phthalate trihydrate, C14H26N2O14Mg
  53. Crystal structure of 1-(p-tolylphenyl)-4-(2-furoyl)-3-methyl-1H-pyrazol-5-ol, C16H14N2O3
  54. The crystal structure of bis(1,4,7,10,13-pentaoxacyclopentadecane)-potassium(I) dichloridocopper(I), C20H40Cl2CuKO10
  55. The crystal structure of tris(tetra-n-butylammonium) hexanitrato-κ2O,O′-lanthanium(III) C48H108N9O18La
Heruntergeladen am 19.12.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2023-0479/html?srsltid=AfmBOoqtTL7CdXBURf-LezFkCh5vsSppUVjpPXFo_GusRHF9_7mk-iE8
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