Home Crystal structure of (2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(((4aS,5R,6S)-1-oxo-5-vinyl-4,4a,5,6-tetrahydro-1H,3H-pyrano[3,4-c]pyran-6-yl)oxy)tetrahydro-2H-pyran-3-yl 2,3-dihydroxybenzoate hydrate, C23H26O12·H2O
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Crystal structure of (2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(((4aS,5R,6S)-1-oxo-5-vinyl-4,4a,5,6-tetrahydro-1H,3H-pyrano[3,4-c]pyran-6-yl)oxy)tetrahydro-2H-pyran-3-yl 2,3-dihydroxybenzoate hydrate, C23H26O12·H2O

  • Xue Zeng ORCID logo , Yuanjiao Feng , Lei Shi , Wenwu Zhong and Yahui Niu EMAIL logo
Published/Copyright: February 16, 2024

Abstract

C23H26O12·H2O, orthorhombic, P212121 (no. 19), a = 6.2630(6) Å, b = 17.5649(18) Å, c = 21.929(2) Å, V = 2412.4(4) Å3, Z = 4, R gt (F) = 0.0381, wR ref (F2) = 0.1017, T = 296 K.

CCDC no.: 2326684

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.24 × 0.22 × 0.21 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.12 mm−1
Diffractometer, scan mode: φ and ω
θmax, completeness: 25.0°, >99 %
N(hkl)measured, N(hkl)unique, Rint: 12,366, 4249, 0.024
Criterion for Iobs, N(hkl)gt: Iobs > 2σ(Iobs), 3540
N(param)refined: 333
Programs: CrysAlisPRO [1], Olex2 [2], SHELX [3]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
C1 0.9329 (5) 0.42282 (18) 0.18827 (14) 0.0477 (7)
C2 1.0925 (6) 0.37768 (18) 0.21052 (16) 0.0546 (8)
H2A 1.205547 0.363938 0.185320 0.066*
C3 1.0874 (6) 0.35202 (18) 0.27067 (15) 0.0522 (8)
H3 1.196750 0.321144 0.285220 0.063*
C4 0.9228 (5) 0.37192 (16) 0.30847 (14) 0.0451 (7)
H4 0.920602 0.354514 0.348516 0.054*
C5 0.7576 (5) 0.41841 (15) 0.28698 (12) 0.0363 (6)
C6 0.7625 (5) 0.44348 (16) 0.22642 (13) 0.0408 (7)
C7 0.5727 (5) 0.43992 (15) 0.32419 (12) 0.0382 (7)
C8 0.3989 (5) 0.42403 (15) 0.42029 (12) 0.0361 (6)
H8 0.270848 0.427175 0.394739 0.043*
C9 0.3881 (5) 0.35349 (14) 0.46040 (12) 0.0354 (6)
H9 0.522865 0.348883 0.482820 0.043*
C10 0.2075 (5) 0.36207 (15) 0.50605 (12) 0.0360 (6)
H10 0.072313 0.364280 0.483634 0.043*
C11 0.2355 (5) 0.43632 (15) 0.54088 (12) 0.0382 (7)
H11 0.373354 0.434401 0.561952 0.046*
C12 0.0664 (6) 0.4539 (2) 0.58737 (14) 0.0520 (8)
H12A 0.074651 0.416166 0.619592 0.062*
H12B 0.097796 0.503057 0.605398 0.062*
C13 0.4182 (5) 0.49490 (15) 0.45902 (12) 0.0397 (7)
H13 0.552023 0.494490 0.482180 0.048*
C14 0.5365 (6) 0.62067 (18) 0.43785 (16) 0.0549 (8)
H14 0.527364 0.629083 0.481947 0.066*
C16 0.8035 (6) 0.61369 (18) 0.36121 (17) 0.0581 (9)
H16 0.938629 0.598377 0.348613 0.070*
C17 0.6739 (5) 0.64318 (17) 0.31911 (15) 0.0454 (7)
C18 0.7543 (5) 0.65154 (18) 0.25654 (16) 0.0531 (8)
C19 0.4084 (6) 0.7039 (2) 0.22845 (15) 0.0601 (9)
H19A 0.316045 0.660174 0.222707 0.072*
H19B 0.362749 0.743326 0.200339 0.072*
C20 0.3850 (6) 0.73240 (19) 0.29239 (16) 0.0602 (9)
H20A 0.237510 0.746100 0.300178 0.072*
H20B 0.472801 0.777306 0.298273 0.072*
C21 0.4541 (5) 0.67031 (17) 0.33577 (14) 0.0450 (7)
H21 0.356610 0.627305 0.329846 0.054*
C22 0.4510 (6) 0.68999 (18) 0.40411 (15) 0.0557 (9)
H22 0.302438 0.698206 0.416552 0.067*
C23 0.5787 (10) 0.7597 (2) 0.42079 (17) 0.0808 (13)
H23 0.725081 0.757644 0.413863 0.097*
C24 0.5060 (13) 0.8206 (3) 0.4433 (2) 0.122 (2)
H24A 0.360571 0.825320 0.450997 0.147*
H24B 0.597803 0.860718 0.452078 0.147*
O1 0.9387 (4) 0.44674 (17) 0.12904 (10) 0.0701 (7)
H1 0.825799 0.467875 0.120513 0.105*
O2 0.6076 (4) 0.48693 (14) 0.20157 (9) 0.0576 (6)
H2 0.511050 0.492786 0.226373 0.086*
O3 0.4196 (4) 0.47525 (12) 0.30477 (9) 0.0467 (5)
O4 0.5863 (3) 0.41550 (11) 0.38230 (8) 0.0422 (5)
O5 0.3621 (4) 0.28771 (11) 0.42315 (10) 0.0486 (5)
H5 0.466839 0.260053 0.426806 0.073*
O6 0.1995 (4) 0.29917 (12) 0.54713 (10) 0.0509 (6)
H6 0.304091 0.300288 0.569622 0.076*
O7 −0.1444 (5) 0.4553 (2) 0.56491 (14) 0.0986 (11)
H7 −0.153779 0.487198 0.537734 0.148*
O8 0.2409 (4) 0.49908 (10) 0.49872 (8) 0.0428 (5)
O9 0.4076 (4) 0.55881 (11) 0.42134 (9) 0.0468 (5)
O10 0.9322 (4) 0.63342 (16) 0.23976 (12) 0.0729 (7)
O11 0.6262 (4) 0.68248 (14) 0.21441 (10) 0.0592 (6)
O12 0.5605 (5) 0.31462 (17) 0.61253 (12) 0.0827 (9)
H12C 0.560128 0.330248 0.649230 0.124*
H12D 0.657587 0.281273 0.608062 0.124*
O15 0.7537 (4) 0.60424 (14) 0.42103 (11) 0.0651 (6)

1 Source of material

The title compound was directly extracted from Conyzae Herba. Firstly, the 2.0 kg Conyzae Herba was smashed and soaked in EtOH kept warm at 353 K for about 8 h. The liquid was separated and evaporated under vacuum. The residue was purified by flash column chromatography on silica gel (dichloromethane/methanol = 100:1 to 10:1), and recrystallized with 75 % EtOH to obtain the white solid target compound.

2 Experimental details

The carbon-bound hydrogen atoms were placed in their geometrically idealized positions and constrained to ride on their parent atoms.

3 Comment

The title compound is an important natural product, and also called 2′-O-(2,3-dihydroxybenzoyl)sweroside. This compound was mainly extracted from Conyza blinii Level, which possesses obvious effects of antiinflammatory and hematischesis [4], [5], [6].

The basic structure of the title compound is a sweroside derivative, containing a 2,3-dihydroxybenzoyl. The key lengths and angles obtained from the title structure are within the normal range and are consistent with those previously reported in similar structures [79]. The bond angle for O3–C7–O4 is 122.8(3)°, which is consistent with O=C–O group. The distances of C16=C17 and C22=C23 double bonds is 1.334(5)° Å and 1.263(6)° Å, respectively. Additionally, the crystal water can be found in this compound via a hydrogen bonding interaction, and the distance of O6–O12 is 2.691(4) Å.


Corresponding author: Yahui Niu, Chongqing Medical and Pharmaceutical College, Chongqing 404100, P.R. China, E-mail:

Funding source: Natural Science Foundation of Chongqing Municipal Commission of Education

Award Identifier / Grant number: KJQN202202801

Award Identifier / Grant number: KJQN202002802

  1. Author contribution: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: Natural Science Foundation of Chongqing Municipal Commission of Education (No. KJQN202002802, KJQN202202801). Natural Science Foundation of Science and Technology Commission of Chongqing Municipality. (No. cstc2020jcyj-msxmX0194).

  3. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

References

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Received: 2023-12-11
Accepted: 2024-01-19
Published Online: 2024-02-16
Published in Print: 2024-04-25

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

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