Startseite The crystal structure of N1,N3-bis(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)\ propanediamide hydrate, C25H26N6O4, 2(H2O)
Artikel Open Access

The crystal structure of N1,N3-bis(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)\ propanediamide hydrate, C25H26N6O4, 2(H2O)

  • Mark G. Smith ORCID logo EMAIL logo und Andreas Lemmerer
Veröffentlicht/Copyright: 24. Januar 2024

Abstract

C25H26N6O4, 2(H2O), triclinic, P 1 (no. 2), a = 9.8423(6) Å, b = 11.2923(7) Å, c = 13.3810(8) Å, α = 69.053(3)°, β = 73.926(4)°, γ = 68.979(3)°, V = 1277.49(14) Å3, Z = 2, R gt (F) = 0.0757, wR ref (F2) = 0.2364, T = 173 K.

CCDC no.: 1873551

1 Source of materials

All reagents used were commercially available and used without further purification. An amount of 0.074 g of 4-aminoantipyrine (0.365 mmol) and 0.039 g of malonic acid (0.376 mmol) were added into a sample vial. The solids were dissolved in 3 mL of a 1:1 mixture of 1,2-dichloroethane:methanol, stirred for 30 min at room temperature, and were left to stand very slightly opened to the atmosphere. The resultant solid was re-dissolved in chloroform and again left to stand very slightly opened to the atmosphere. Colourless blocks were afforded after three days (Tables 1 and 2).

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.29 × 0.20 × 0.14 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.10 mm−1
Diffractometer, scan mode: Bruker D8 Venture Photon CCD, ω
θmax, completeness: 28.0°, >99 %
N(hkl)measured, N(hkl)unique, Rint: 22,991, 6140, 0.063
Criterion for Iobs, N(hkl)gt: Iobs > 2σ(Iobs), 3310
N(param)refined: 348
Programs: Bruker ( 1 ), SHELX ( 2 , 3 ), WinGX/ORTEP-3 ( 4 ), PLATON ( 5 )
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
C1 0.6786 (3) 0.8612 (3) 0.0977 (2) 0.0414 (7)
C2 0.5624 (3) 0.8049 (3) 0.1647 (2) 0.0420 (7)
C3 0.6230 (3) 0.6766 (3) 0.2158 (2) 0.0474 (7)
C4 0.5496 (4) 0.5765 (3) 0.2956 (3) 0.0651 (10)
H4A 0.558727 0.567145 0.369294 0.098*
H4B 0.597096 0.490897 0.280079 0.098*
H4C 0.444858 0.605704 0.289645 0.098*
C5 0.8775 (4) 0.5583 (4) 0.2582 (3) 0.0667 (10)
H5A 0.884783 0.60918 0.301475 0.1*
H5B 0.975068 0.525856 0.216878 0.1*
H5C 0.841992 0.482882 0.306602 0.1*
C6 0.9409 (3) 0.7538 (3) 0.0372 (2) 0.0428 (7)
C7 1.0329 (4) 0.8229 (3) 0.0335 (3) 0.0525 (8)
H7 1.012101 0.869197 0.085456 0.063*
C8 1.1572 (4) 0.8239 (3) −0.0476 (3) 0.0616 (10)
H8 1.220165 0.873064 −0.051666 0.074*
C9 1.1899 (4) 0.7558 (3) −0.1208 (3) 0.0622 (10)
H9 1.276178 0.75576 −0.174718 0.075*
C10 1.0966 (4) 0.6866 (4) −0.1161 (3) 0.0702 (11)
H10 1.117933 0.639908 −0.167841 0.084*
C11 0.9720 (4) 0.6849 (4) −0.0363 (3) 0.0622 (9)
H11 0.908576 0.636355 −0.032658 0.075*
C12 0.3135 (3) 0.8914 (3) 0.2536 (3) 0.0503 (8)
C13 −0.1345 (4) 0.8295 (3) 0.5725 (3) 0.0530 (8)
C14 −0.1459 (3) 0.8915 (3) 0.4621 (2) 0.0473 (7)
C15 −0.2694 (4) 0.8813 (3) 0.4435 (2) 0.0505 (8)
C16 −0.3248 (5) 0.9282 (5) 0.3396 (3) 0.0764 (12)
H16A −0.297669 0.853862 0.309515 0.115*
H16B −0.280774 0.997086 0.288141 0.115*
H16C −0.432541 0.96473 0.352554 0.115*
C17 −0.4481 (5) 0.7503 (5) 0.5507 (3) 0.0824 (14)
H17A −0.500776 0.791958 0.488768 0.124*
H17B −0.518859 0.755633 0.617904 0.124*
H17C −0.396535 0.657149 0.554231 0.124*
C18 −0.3041 (3) 0.7218 (3) 0.7287 (2) 0.0478 (8)
C19 −0.3756 (4) 0.7997 (3) 0.7966 (3) 0.0531 (8)
H19 −0.397697 0.893311 0.768403 0.064*
C20 −0.4161 (4) 0.7421 (4) 0.9071 (3) 0.0599 (9)
H20 −0.466745 0.795948 0.954429 0.072*
C21 −0.3824 (4) 0.6075 (4) 0.9467 (3) 0.0643 (10)
H21 −0.407897 0.567692 1.022257 0.077*
C22 −0.3118 (4) 0.5283 (4) 0.8783 (3) 0.0674 (10)
H22 −0.290186 0.434731 0.906954 0.081*
C23 −0.2720 (4) 0.5847 (4) 0.7678 (3) 0.0597 (9)
H23 −0.22411 0.530873 0.720141 0.072*
C24 0.0495 (4) 0.8999 (3) 0.3074 (3) 0.0521 (8)
C25 0.1585 (3) 0.9734 (3) 0.2339 (3) 0.0554 (9)
H25A 0.134587 1.059287 0.248471 0.066*
H25B 0.1518 0.99138 0.157149 0.066*
N1 0.4117 (3) 0.8761 (3) 0.1641 (2) 0.0466 (6)
N2 0.8071 (3) 0.7606 (2) 0.1156 (2) 0.0452 (6)
N3 0.7740 (3) 0.6434 (2) 0.1831 (2) 0.0499 (7)
N4 −0.0416 (3) 0.9523 (3) 0.3850 (2) 0.0475 (6)
N5 −0.2559 (3) 0.7810 (3) 0.6160 (2) 0.0584 (8)
N6 −0.3422 (3) 0.8181 (3) 0.5375 (2) 0.0565 (7)
O1 0.6732 (2) 0.97313 (19) 0.03454 (16) 0.0473 (5)
O2 0.3462 (3) 0.8437 (3) 0.34494 (18) 0.0646 (7)
O3 −0.0431 (3) 0.8175 (3) 0.62809 (18) 0.0643 (7)
O4 0.0457 (3) 0.8000 (3) 0.2921 (2) 0.0774 (8)
H1 0.380 (4) 0.927 (3) 0.101 (3) 0.049 (9)*
H4 −0.033 (5) 1.033 (4) 0.394 (3) 0.093 (14)*
O1W 0.2422 (4) 0.7038 (4) 0.5518 (3) 0.162 (2)
H1W 0.269598 0.73732 0.480884 0.242*
H2W 0.150396 0.749045 0.578267 0.242*
O2W −0.1295 (6) 0.4583 (5) 0.5498 (3) 0.1467 (18)
H3W −0.077112 0.388863 0.589105 0.17 (3)*

2 Experimental details

C-bound hydrogen atoms were located in the difference map then positioned geometrically and were allowed to ride on their respective parent atoms with thermal displacement parameters 1.2 times of the parent C atom. The coordinates and isotropic displacement parameters of all N-bound and O-bound H atoms were allowed to refine freely. Diagrams and publication material were generated using ORTEP-3 ( 4 ), WinGX ( 6 ) and PLATON ( 5 ).

3 Discussion

4–Aminoantipyrine (4AAP) was historically used as an antipyretic pharmaceutical drug (Acheson ( 7 )), and as a prophylactic against oxidative stress (Teng et al. ( 8 )). The crystal structure of 4AAP has been reported by Li et al. ( 9 ) and by Mnguni and Lemmerer ( 10 ) and a co-crystal of 4AAP has been reported by Smith and Lemmerer ( 11 ). Derivatives of 4AAP account for at least two pharmaceutical drugs, aminoantipyrine and 4-(N,N-dimethyl)-aminoantipyrine, both which have been used as analgesics for over 100 years. This paper presents the crystal structure a new derivative of 4AAP.

As shown in the figure, the asymmetric unit contains one molecule of N1,N3-bis(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl) propanediamide and two molecules of water. Although the stoichiometry of the reactants was 1:1, both carboxylic acid groups of the malonic acid reacted with the amine groups of two separate 4AAP molecules. One of the water molecules forms a bridge via hydrogen bonding through its two H-atoms to the carbonyl oxygen atoms of O2 and O3 respectively. This bridge creates an R(11) hydrogen bonded ring. There is a second water molecule in the asymmetric unit, but it was not possible to determine the position of the second hydrogen atom, and hence it is shown in the diagram as having only one hydrogen atom, resulting in a larger ellipsoid. In the packing, two N1,N3-bis(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl) propanediamide molecules are joined to each other via two N–H⋯O heterosynthons, formed between the amine hydrogen atoms and the antipyrine carbonyl oxygen atoms. This reults in an R(10) hydrogen bonded ring between the two molecules. The extensive hydrogen bonding results in a 3D packing network.


Corresponding author: Mark G. Smith, Chemistry Department, University of South Africa, Unisa Science Campus 28, Pioneer Avenue Florida, Roodepoort, Gauteng, South Africa, E-mail:

Funding source: University of the Witwatersrand and the Molecular Sciences Institute

Funding source: Chemistry Department of the University of South Africa

Funding source: Wits Friedel Sellschop

  1. Author contributions: The author has accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: The University of the Witwatersrand and the Molecular Sciences Institute are thanked for providing the infrastructure and financial support to do this work. Mark G. Smith thanks the Chemistry Department of the University of South Africa for their financial support and Andreas Lemmerer thanks the Wits Friedel Sellschop award for funding.

  3. Conflict of interest statement: The author declares no conflict of interest regarding this article.

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Received: 2023-11-20
Accepted: 2023-12-31
Published Online: 2024-01-24
Published in Print: 2024-04-25

© 2023 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

  1. Frontmatter
  2. New Crystal Structures
  3. Solvothermal synthesis and crystal structure of aqua-tris(p-acetamidobenzoate-κ2O,O′)-(2,2′-bipyridine-κ2N,N′)terbium(III) - water - methanol (1/1/1)
  4. Crystal structure of hexaaquazinc(II) catena-poly[bis(1-(3-carboxyphenyl)-5-methyl-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ2O,O′)-bis(μ2-1-(3-carboxyphenyl)-5-methyl-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ2O:O′)trizinc(II)] hexahydrate C26H36N4O20Zn2
  5. The crystal structure of valinyl-N-ium-4-(5-(thiophen-2-yl)isoxazol-3-yl)phenyl trifluoroacetate
  6. Crystal structure of bis(3,5-diisopropyl-1H-pyrazol-4-ammonium) tetrafluoroterephthalate, 2[C9H18N3][C8F4O4]
  7. Crystal structure of aqua-octakis(μ3-salicylato)-(1,10-phenanthroline)-(acetonitrile)-dicobalt(II)-trititanium(IV), C70H45N3O25Co2Ti3
  8. Crystal structure of catena-poly[aqua-(μ2-4,4′-diimidazole diphenyl ether-κ2N:N′)-(sulfato-κ1O)-cobalt(II)] – dimethylformamide (2/1), C39H37CoN9O8S
  9. Crystal structure of (5R,8R,9R,10R,12R, 13R,14R,17S)-2-(E-3-fluorobenzylidene)-12-hydroxy-4,4,8,10,14-pentamethyl-17-((R)-2,6,6-trimethyltetrahydro-2H-pyran-2-yl) hexadecahydro-3H-cyclopenta[a]phenanthren-3-one, C37H53FO3
  10. Crystal structure of (Z)-4-((4,5,6-trimethoxy-3-oxobenzofuran-2(3H)-ylidene)methyl)phenyl diphenylphosphinate, C30H25O7P
  11. Crystal structure of 3-((5-methylpyridin-2-yl)amino)-1-phenylpropan-1-one, C15H16N2O
  12. The crystal structure of (R)-9-(5-methoxy-2-methyl-2,3-dihydro-1H-cyclopenta[a]naphthalen-1-ylidene)-9H-thioxanthene, C28H22OS
  13. Crystal structure of diaqua-bis[1-(1-(hydroxymethyl)-1H-pyrazol-3-yl)-5-methyl-1H-1,2,3-triazole-4-carboxylato-κ2N,O)] manganese(II), C16H20MnN10O8
  14. The crystal structure of t-butyl 7-[4-(4-fluorophenyl)-2-[(methanesulfonyl)(methyl)amino]-6-(propan-2-yl)pyrimidin-5-yl]-3,5-dihydroxyhept-6-enoate, C26H36FN3O6S
  15. The crystal structure of samarium sulfate pentahydrate, Sm2(SO4)3(H2O)5
  16. The crystal structure of [triaqua-(8-carboxymethoxy-quinoline-2-carboxylate-κ 4 N,O,O,O)-zinc(II)] monohydrate, C12H15NO9Zn
  17. The crystal structure of 2,3-difluoro-11H-benzo-[4,5]imidazo[2,1-a]isoindol-11-one, C14H6F2N2O
  18. The crystal structure of 2,3-di(9H-carbazol-9-yl)-9H-fluoren-9-one, C37H22N2O
  19. The crystal structure of 5-(2-chloro-3-(3,6-di-tert-butyl-9H-carbazol-9-yl)phenyl)-10,11-dihydro-5H-dibenzo[b,f]azepine, C40H39ClN2
  20. Crystal structure of 2-bromo-1-hydroxy-3-(3-methylbut-2-enyloxy)-9H-xanthen-9-one, C18H15BrO4
  21. Crystal structure of bis(μ2-benzenesulfonato-κ2O:O′)-bis(μ2-6,6′-((ethane-1,2-diylbis(azaneylylidene))bis(methaneylylidene))-bis(2-methoxyphenolato-κ6O,O′:O′,N,N′,O′′:O′′,O′′′))disodium(I)dicopper(II)
  22. The crystal structure of (E)-1,2-bis(benzo[e][1,2]azaborinin-2(1H)-yl)ethene, C18H16B2N2
  23. Crystal structure of 3-oxo-urs-12-en-28-benzyl ester, C37H52O3
  24. The crystal structure of ethyl (E)-1-chloro-3-(4-chloro-1-methyl-1H-indole-2-carbonyl)-4-oxo-2-phenylcyclooct-2-ene-1-carboxylate, C27H25Cl2NO4
  25. The crystal structure of 4,4′-((5-bromo-2-iodo-1,3-phenylene)bis(oxy))bis(tert-butylbenzene) ─ ethanol (2/1), C26H28BrIO2
  26. Crystal structure of (E)-1-(4-(benzyloxy)-2-hydroxyphenyl)-3-(dimethylamino)prop-2-en-1-one, C18H19NO3
  27. The crystal structure of N1,N3-bis(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)\ propanediamide hydrate, C25H26N6O4, 2(H2O)
  28. The crystal structure of 2,5-bis[(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)amino]cyclohexa-2,5-diene-1,4-dione, C28H26N6O4
  29. Crystal structure of 3,4-bis[2-(hydroxymethyl)-pyrrolidin-1-yl] cyclobut-3-ene-1,2-dione hydrate, C14H22N2O5
  30. The crystal structure of 2-(3,4–dichlorobenzyl)-1H-benzimidazole, C14H10Cl2N2
  31. The crystal structure of 2-(2-((4,6-dimethoxypyrimidin-2-yl)oxy)phenyl)-4-(piperidin-1-yl)-5H-chromeno[2,3-d]pyrimidine, C28H27N5O4
  32. The crystal structure of 6-(benzofuran-2-yl)-2-oxo-4,5-diphenyl-3,4-dihydro-2H-pyran-3-carbonitrile, C26H17NO3
  33. Crystal structure of N-(4-bromobenzyl)-3-(difluoromethyl)-1-methyl-N-(pyridin-2-yl)-1H-pyrazole-4-carboxamide, C18H15BrF2N4O
  34. The crystal structure of the host-guest complex: N-{5-[2-(2,6-dimethylphenoxy)acetamido]-4-hydroxy-1,6-diphenylhexan-2-yl}-3-methyl-2-(2-oxo-1,3-diazinan-1-yl)butanamide-diethyl ether (2/1)
  35. The crystal structure of (Z)-4-amino-N-(1-(4-hydroxyphenyl)propylidene)benzohydrazide, C16H17N3O2
  36. The crystal structure of diethyl 1,4-dihydro-2,6-dimethyl-4-(3-cyanophenyl)-3,5-pyridinedicarboxylate, C20H22N2O4
  37. Crystal structure of 3-(5-((4-(difluoromethoxy)phenyl) sulfonyl)-3,4,5,6-tetrahydropyrrolo[3,4-c]pyrrol-2(1H)-yl) oxetane-3-carboxamide, C17H19F2N3O5S
  38. Crystal structure of 2-((2,6-dichloro-4-(3,5-dimethylisoxazol-4-yl)phenyl)amino)-N-(2-(4-methylpiperazin-1-yl)ethyl)benzamide hydrate, C25H37Cl2N5O6
  39. Crystal structure of 3-(benzo[d]thiazol-2-yl)-5-bromo-2-hydroxybenzaldehyde, C14H8BrNO2S
  40. Crystal structure of 3-(difluoromethyl)-1-methyl-N-(pyridin-2-yl)-1H-pyrazole-4-carboxamide, C11H10F2N4O
  41. Crystal structure of 3-(2-ethoxy-2-oxoethyl)-1-isopropyl-1H-imidazol-3-ium hexafluoridophosphate(V), C20H34F12N4P2
  42. Crystal structure of ethyl 5,6-dichloro-2-methyl-2,3-dihydro-1 H-benzo[d]imidazole-2-carboxylate, C11H12Cl2N2O2
  43. The crystal of structure of (OC-6-22)-pentakis(acetonitrile)bromidoruthenium(II)bromide monohydrate, C10H15Br2N5Ru
  44. Crystal structure of (2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(((4aS,5R,6S)-1-oxo-5-vinyl-4,4a,5,6-tetrahydro-1H,3H-pyrano[3,4-c]pyran-6-yl)oxy)tetrahydro-2H-pyran-3-yl 2,3-dihydroxybenzoate hydrate, C23H26O12·H2O
  45. The crystal structure of (E)-4-amino-N′-(1-(4-fluorophenyl)propylidene)benzohydrazide, C16H16FN3O
  46. The crystal structure of 2′-(9H-carbazol-9-yl)-[1,1′-binaphthalen]-2-amine, C32H22N2
  47. Crystal structure of poly[μ3-diiodido-[μ2-di(1H-pyrazol-1-yl)methane-κ2N,N′)]dicopper(I)], C7H8Cu2I2N4
  48. Crystal structure of 3-amino-N′-hydroxy-1H-pyrazole-4-carboximidamide, C4H7N5O
  49. The crystal structure of 1,3-diacetyltetrahydroimidazo[4,5-d]imidazole-2,5(1H,3H)-dione, C8H10O4N4
  50. Crystal structure of catena-poly[aqua-(μ2-1,4-diazabicyclo[2.2.2]octane-k2N: N′)-bis(sorbato-κ1O)-copper(II), C18H28CuN2O5
  51. Crystal structure of catena-poly[triaqua-(μ2 -1-(4-carboxylatophenyl)-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ3O,O′:O′′)manganese(II)], C12H12N2O8Mn
  52. The crystal structure of [hexaaquamagnesium(II)] 4-[(pyridine-4-carbonyl)-amino]-phthalate trihydrate, C14H26N2O14Mg
  53. Crystal structure of 1-(p-tolylphenyl)-4-(2-furoyl)-3-methyl-1H-pyrazol-5-ol, C16H14N2O3
  54. The crystal structure of bis(1,4,7,10,13-pentaoxacyclopentadecane)-potassium(I) dichloridocopper(I), C20H40Cl2CuKO10
  55. The crystal structure of tris(tetra-n-butylammonium) hexanitrato-κ2O,O′-lanthanium(III) C48H108N9O18La
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