Home Physical Sciences Crystal structure of 3-amino-N′-hydroxy-1H-pyrazole-4-carboximidamide, C4H7N5O
Article Open Access

Crystal structure of 3-amino-N′-hydroxy-1H-pyrazole-4-carboximidamide, C4H7N5O

  • Yunlu Li ORCID logo EMAIL logo
Published/Copyright: February 8, 2024

Abstract

C4H7N5O, monoclinic, P21 (no. 4), a = 4.855(3) Å, b = 9.026(5) Å, c = 7.092(4) Å, β = 103.267(7)°, V = 302.5(3) Å3, Z = 2, Rgt(F) = 0.0385, wRref(F2) = 0.1183, T = 296(2) K.

CCDC no.: 2326068

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colourless block
Size: 0.12 × 0.08 × 0.06 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 0.12 mm−1
Diffractometer, scan mode: Bruker APEX-II, φ and ω
θmax, completeness: 27.6°, >99 %
N(hkl)measured, N(hkl)unique, Rint: 1891, 1218, 0.021
Criterion for Iobs, N(hkl)gt: Iobs > 2 σ(Iobs), 1154
N(param)refined: 97
Programs: Bruker [1], SHELX [2, 3, 4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z Uiso*/Ueq
O1 0.8024 (4) 0.6764 (2) 0.9074 (3) 0.0352 (5)
H1 0.903 (8) 0.756 (4) 0.875 (2) 0.053*
N1 −0.1048 (5) 0.3263 (3) 0.4462 (3) 0.0301 (5)
N2 −0.0016 (5) 0.4043 (3) 0.3108 (3) 0.0279 (5)
N3 0.3688 (5) 0.5769 (3) 0.3277 (3) 0.0317 (5)
H3A 0.323701 0.588672 0.204078 0.038*
H3B 0.508847 0.625370 0.396600 0.038*
N4 0.5406 (5) 0.4349 (3) 0.9426 (3) 0.0360 (6)
H4A 0.667013 0.468942 1.038165 0.043*
H4B 0.456060 0.352855 0.954735 0.043*
N5 0.5891 (5) 0.6331 (3) 0.7419 (3) 0.0281 (5)
C1 0.2164 (5) 0.4804 (3) 0.4155 (3) 0.0229 (5)
C2 0.2553 (5) 0.4512 (3) 0.6156 (3) 0.0236 (5)
C3 0.0417 (5) 0.3519 (3) 0.6266 (4) 0.0282 (6)
H3 0.006903 0.310762 0.739080 0.034*
C4 0.4750 (5) 0.5097 (3) 0.7745 (3) 0.0240 (5)
H1A −0.272 (8) 0.275 (4) 0.415 (5) 0.038 (9)*

1 Source of materials

Using methanol as solvent, 2,4-dichloro-1,3,5-trinitrobenzene (0.70 g, 2.5 mmol) was mixed with 80 % hydrazine hydrate (0.75 mL, 18.8 mmol) at low temperature and continued to react at room temperature for 2 days. Then the reaction liquid was filtered, and the resulting filtrate was distilled under vacuum to obtain a yellow solid. The obtained solid was purified by silica gel column chromatography with ethyl acetate/petroleum ether mixture as eluent, and the yellow title compound crystals were obtained by slowly evaporating the solvent at room temperature.

2 Experimental details

The most hydrogen atoms were placed geometrically in calculated positions riding on attached atoms. C3-, N3- and N4-bound H atoms were refined as riding with Uiso(H) = 1.2Ueq. O1-bound H atom was refined as riding with Uiso(H) = 1.5Ueq. And the position of N1-bound H-atom was freely refined.

3 Comment

Amidoxime compounds are a kind of important chemical synthesis intermediates, which are widely used in the fields of organic luminescent materials, electron conversion materials, drug synthesis and the preparation of energetic compounds [5], [6], [7], [8]. In the crystal structure of the title compound (cf. the figure), all bond lengths and angles are within the normal range [9], [10], [11]. And the molecular structure contains a pyrazole ring, an amino group and an amidoxime group, and their atoms respectively lie in separate planes. The dihedral angles of the pyrazole ring with the amino and amidoxime groups are 2.17° and 22.41°, respectively, so the molecule has a certain degree of planarity. And the structural characteristics of this compound are similar to those of 5-amino-N′-hydroxy-1H-1,2,3-triazole-4-carboximidamide [9] and 3-amino-1H-pyrazole-4-carbonititrile [10].


Corresponding author: Yunlu Li, School of Materials and Energy, University of Electronic Science and Technology of China, 610054 No 4 Section 2 of Jianshe North Road, Chengdu, P.R. China, E-mail:

Funding source: National Natural Science Foundation of China

Award Identifier / Grant number: (No. 22105023)

  1. Author contributions: The author has accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Research funding: This work was funded by National Natural Science Foundation of China (No. 22105023).

  3. Conflict of interest statement: The author declares no conflicts of interest regarding this article.

References

1. BRUKER. SAINT, APEX2 and SADABS. Bruker AXS Inc: Madison, WI, USA, 2014.Search in Google Scholar

2. Sheldrick, G. M. SHELXTL – integrated space-group and crystal-structure determination. Acta Crystallogr. 2015, A71, 3–8.10.1107/S2053273314026370Search in Google Scholar PubMed PubMed Central

3. Sheldrick, G. M. Crystal structure refinement with SHELXL. Acta Crystallogr. 2015, C71, 3–8; https://doi.org/10.1107/s2053229614024218.Search in Google Scholar

4. Parsons, S., Flack, H. D., Wagner, T. Use of intensity quotients and differences inabsolute structure refinement. Acta Crystallogr. 2013, B69, 249–259; https://doi.org/10.1107/s2052519213010014.Search in Google Scholar PubMed PubMed Central

5. Li, Y., Zhang, Z., Yang, W., Li, H., Wang, Y., Wang, B. Synthesis and characterization of amino-oxime compounds. Chem. Reagent. 2013, 35, 785–788.Search in Google Scholar

6. Deeb, A., El-Mobayed, M., Essawy, A. N., El-Hamid, A. A., El-Hamid, A. M. A. Heterocyclic synthesis from 3-amino-4-cyanopyrazole. Collect. Czech. Chem. Commun. 1990, 55, 728–733; https://doi.org/10.1135/cccc19900728.Search in Google Scholar

7. Chauhan, P. M. S., Singh, S., Chatterjee, R. K. Antifilarial profile of substituted pyrazoles: a new class of antifilarial agents. Indian J. Chem., Sect. B 1993, 32B, 858–861.10.1002/chin.199347186Search in Google Scholar

8. Liu, Y., Qi, X., Zhang, W., Yin, P., Cai, Z., Zhang, Q. Construction of bicyclic 1,2,3-triazine N-oxides from aminocyanides. Org. Lett. 2021, 23, 734–738; https://doi.org/10.1021/acs.orglett.0c03952.Search in Google Scholar PubMed

9. Cao, Y., Huang, H., Pang, A., Lin, X., Yang, J., Gong, X., Fan, G. Synthesis of a bi-heterocyclic skeleton with high HOF and corresponding energetic salts with high heat of detonation. Chem. Eng. J. 2020, 393, 124683; https://doi.org/10.1016/j.cej.2020.124683.Search in Google Scholar

10. Emelina, E. E., Petrov, A. A., Borissova, A. O., Filyukov, D. V., Antipin, M. Y. The interplay of hydrogen bonds in the solid state structure of NH-pyrazoles bearing cyano and amino substituents. J. Mol. Struct. 2012, 1014, 63–69; https://doi.org/10.1016/j.molstruc.2012.01.026.Search in Google Scholar

11. Dolzhenko, A. V., Dolzhenko, A. V., Tan, G. K., Koh, L. L., Pastorin, G. N-Acetyl-5-amino-1-methyl-1H-pyrazole-4-carbohydrazonamide dihydrate. Acta Crystallogr. 2010, E66, o1209–o1210; https://doi.org/10.1107/s1600536810015357.Search in Google Scholar

Received: 2023-12-19
Received: 2023-12-19
Accepted: 2024-01-17
Published Online: 2024-02-08
Published in Print: 2024-04-25

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Articles in the same Issue

  1. Frontmatter
  2. New Crystal Structures
  3. Solvothermal synthesis and crystal structure of aqua-tris(p-acetamidobenzoate-κ2O,O′)-(2,2′-bipyridine-κ2N,N′)terbium(III) - water - methanol (1/1/1)
  4. Crystal structure of hexaaquazinc(II) catena-poly[bis(1-(3-carboxyphenyl)-5-methyl-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ2O,O′)-bis(μ2-1-(3-carboxyphenyl)-5-methyl-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ2O:O′)trizinc(II)] hexahydrate C26H36N4O20Zn2
  5. The crystal structure of valinyl-N-ium-4-(5-(thiophen-2-yl)isoxazol-3-yl)phenyl trifluoroacetate
  6. Crystal structure of bis(3,5-diisopropyl-1H-pyrazol-4-ammonium) tetrafluoroterephthalate, 2[C9H18N3][C8F4O4]
  7. Crystal structure of aqua-octakis(μ3-salicylato)-(1,10-phenanthroline)-(acetonitrile)-dicobalt(II)-trititanium(IV), C70H45N3O25Co2Ti3
  8. Crystal structure of catena-poly[aqua-(μ2-4,4′-diimidazole diphenyl ether-κ2N:N′)-(sulfato-κ1O)-cobalt(II)] – dimethylformamide (2/1), C39H37CoN9O8S
  9. Crystal structure of (5R,8R,9R,10R,12R, 13R,14R,17S)-2-(E-3-fluorobenzylidene)-12-hydroxy-4,4,8,10,14-pentamethyl-17-((R)-2,6,6-trimethyltetrahydro-2H-pyran-2-yl) hexadecahydro-3H-cyclopenta[a]phenanthren-3-one, C37H53FO3
  10. Crystal structure of (Z)-4-((4,5,6-trimethoxy-3-oxobenzofuran-2(3H)-ylidene)methyl)phenyl diphenylphosphinate, C30H25O7P
  11. Crystal structure of 3-((5-methylpyridin-2-yl)amino)-1-phenylpropan-1-one, C15H16N2O
  12. The crystal structure of (R)-9-(5-methoxy-2-methyl-2,3-dihydro-1H-cyclopenta[a]naphthalen-1-ylidene)-9H-thioxanthene, C28H22OS
  13. Crystal structure of diaqua-bis[1-(1-(hydroxymethyl)-1H-pyrazol-3-yl)-5-methyl-1H-1,2,3-triazole-4-carboxylato-κ2N,O)] manganese(II), C16H20MnN10O8
  14. The crystal structure of t-butyl 7-[4-(4-fluorophenyl)-2-[(methanesulfonyl)(methyl)amino]-6-(propan-2-yl)pyrimidin-5-yl]-3,5-dihydroxyhept-6-enoate, C26H36FN3O6S
  15. The crystal structure of samarium sulfate pentahydrate, Sm2(SO4)3(H2O)5
  16. The crystal structure of [triaqua-(8-carboxymethoxy-quinoline-2-carboxylate-κ 4 N,O,O,O)-zinc(II)] monohydrate, C12H15NO9Zn
  17. The crystal structure of 2,3-difluoro-11H-benzo-[4,5]imidazo[2,1-a]isoindol-11-one, C14H6F2N2O
  18. The crystal structure of 2,3-di(9H-carbazol-9-yl)-9H-fluoren-9-one, C37H22N2O
  19. The crystal structure of 5-(2-chloro-3-(3,6-di-tert-butyl-9H-carbazol-9-yl)phenyl)-10,11-dihydro-5H-dibenzo[b,f]azepine, C40H39ClN2
  20. Crystal structure of 2-bromo-1-hydroxy-3-(3-methylbut-2-enyloxy)-9H-xanthen-9-one, C18H15BrO4
  21. Crystal structure of bis(μ2-benzenesulfonato-κ2O:O′)-bis(μ2-6,6′-((ethane-1,2-diylbis(azaneylylidene))bis(methaneylylidene))-bis(2-methoxyphenolato-κ6O,O′:O′,N,N′,O′′:O′′,O′′′))disodium(I)dicopper(II)
  22. The crystal structure of (E)-1,2-bis(benzo[e][1,2]azaborinin-2(1H)-yl)ethene, C18H16B2N2
  23. Crystal structure of 3-oxo-urs-12-en-28-benzyl ester, C37H52O3
  24. The crystal structure of ethyl (E)-1-chloro-3-(4-chloro-1-methyl-1H-indole-2-carbonyl)-4-oxo-2-phenylcyclooct-2-ene-1-carboxylate, C27H25Cl2NO4
  25. The crystal structure of 4,4′-((5-bromo-2-iodo-1,3-phenylene)bis(oxy))bis(tert-butylbenzene) ─ ethanol (2/1), C26H28BrIO2
  26. Crystal structure of (E)-1-(4-(benzyloxy)-2-hydroxyphenyl)-3-(dimethylamino)prop-2-en-1-one, C18H19NO3
  27. The crystal structure of N1,N3-bis(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)\ propanediamide hydrate, C25H26N6O4, 2(H2O)
  28. The crystal structure of 2,5-bis[(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)amino]cyclohexa-2,5-diene-1,4-dione, C28H26N6O4
  29. Crystal structure of 3,4-bis[2-(hydroxymethyl)-pyrrolidin-1-yl] cyclobut-3-ene-1,2-dione hydrate, C14H22N2O5
  30. The crystal structure of 2-(3,4–dichlorobenzyl)-1H-benzimidazole, C14H10Cl2N2
  31. The crystal structure of 2-(2-((4,6-dimethoxypyrimidin-2-yl)oxy)phenyl)-4-(piperidin-1-yl)-5H-chromeno[2,3-d]pyrimidine, C28H27N5O4
  32. The crystal structure of 6-(benzofuran-2-yl)-2-oxo-4,5-diphenyl-3,4-dihydro-2H-pyran-3-carbonitrile, C26H17NO3
  33. Crystal structure of N-(4-bromobenzyl)-3-(difluoromethyl)-1-methyl-N-(pyridin-2-yl)-1H-pyrazole-4-carboxamide, C18H15BrF2N4O
  34. The crystal structure of the host-guest complex: N-{5-[2-(2,6-dimethylphenoxy)acetamido]-4-hydroxy-1,6-diphenylhexan-2-yl}-3-methyl-2-(2-oxo-1,3-diazinan-1-yl)butanamide-diethyl ether (2/1)
  35. The crystal structure of (Z)-4-amino-N-(1-(4-hydroxyphenyl)propylidene)benzohydrazide, C16H17N3O2
  36. The crystal structure of diethyl 1,4-dihydro-2,6-dimethyl-4-(3-cyanophenyl)-3,5-pyridinedicarboxylate, C20H22N2O4
  37. Crystal structure of 3-(5-((4-(difluoromethoxy)phenyl) sulfonyl)-3,4,5,6-tetrahydropyrrolo[3,4-c]pyrrol-2(1H)-yl) oxetane-3-carboxamide, C17H19F2N3O5S
  38. Crystal structure of 2-((2,6-dichloro-4-(3,5-dimethylisoxazol-4-yl)phenyl)amino)-N-(2-(4-methylpiperazin-1-yl)ethyl)benzamide hydrate, C25H37Cl2N5O6
  39. Crystal structure of 3-(benzo[d]thiazol-2-yl)-5-bromo-2-hydroxybenzaldehyde, C14H8BrNO2S
  40. Crystal structure of 3-(difluoromethyl)-1-methyl-N-(pyridin-2-yl)-1H-pyrazole-4-carboxamide, C11H10F2N4O
  41. Crystal structure of 3-(2-ethoxy-2-oxoethyl)-1-isopropyl-1H-imidazol-3-ium hexafluoridophosphate(V), C20H34F12N4P2
  42. Crystal structure of ethyl 5,6-dichloro-2-methyl-2,3-dihydro-1 H-benzo[d]imidazole-2-carboxylate, C11H12Cl2N2O2
  43. The crystal of structure of (OC-6-22)-pentakis(acetonitrile)bromidoruthenium(II)bromide monohydrate, C10H15Br2N5Ru
  44. Crystal structure of (2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(((4aS,5R,6S)-1-oxo-5-vinyl-4,4a,5,6-tetrahydro-1H,3H-pyrano[3,4-c]pyran-6-yl)oxy)tetrahydro-2H-pyran-3-yl 2,3-dihydroxybenzoate hydrate, C23H26O12·H2O
  45. The crystal structure of (E)-4-amino-N′-(1-(4-fluorophenyl)propylidene)benzohydrazide, C16H16FN3O
  46. The crystal structure of 2′-(9H-carbazol-9-yl)-[1,1′-binaphthalen]-2-amine, C32H22N2
  47. Crystal structure of poly[μ3-diiodido-[μ2-di(1H-pyrazol-1-yl)methane-κ2N,N′)]dicopper(I)], C7H8Cu2I2N4
  48. Crystal structure of 3-amino-N′-hydroxy-1H-pyrazole-4-carboximidamide, C4H7N5O
  49. The crystal structure of 1,3-diacetyltetrahydroimidazo[4,5-d]imidazole-2,5(1H,3H)-dione, C8H10O4N4
  50. Crystal structure of catena-poly[aqua-(μ2-1,4-diazabicyclo[2.2.2]octane-k2N: N′)-bis(sorbato-κ1O)-copper(II), C18H28CuN2O5
  51. Crystal structure of catena-poly[triaqua-(μ2 -1-(4-carboxylatophenyl)-4-oxo-1,4-dihydropyridazine-3-carboxylato-κ3O,O′:O′′)manganese(II)], C12H12N2O8Mn
  52. The crystal structure of [hexaaquamagnesium(II)] 4-[(pyridine-4-carbonyl)-amino]-phthalate trihydrate, C14H26N2O14Mg
  53. Crystal structure of 1-(p-tolylphenyl)-4-(2-furoyl)-3-methyl-1H-pyrazol-5-ol, C16H14N2O3
  54. The crystal structure of bis(1,4,7,10,13-pentaoxacyclopentadecane)-potassium(I) dichloridocopper(I), C20H40Cl2CuKO10
  55. The crystal structure of tris(tetra-n-butylammonium) hexanitrato-κ2O,O′-lanthanium(III) C48H108N9O18La
Downloaded on 4.2.2026 from https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2023-0547/html
Scroll to top button