Home Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb
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Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb

  • Thomas Henneberger , Wilhelm Klein and Thomas F. Fässler EMAIL logo
Published/Copyright: September 27, 2018

Abstract

C22H41N2O4Rb, monoclinic, P21/n (no. 14), a = 10.8160(9) Å, b = 17.7253(16) Å, c = 13.2179(12) Å, β = 93.961(8)°, V = 2528.0(4) Å3, Z = 4, Rgt(F) = 0.0376, wRref(F2) = 0.0694, T = 120(2) K.

CCDC no.: 1866601

The crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Yellow block
Size:0.20 × 0.15 × 0.15 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.99 mm−1
Diffractometer, scan mode:Oxford Xcalibur 3, ω and π
θmax, completeness:26.0°, >99%
N(hkl)measured, N(hkl)unique, Rint:26792, 4963, 0.100
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2435
N(param)refined:272
Programs:CrysAlis [1], SHELX [2, 3] , Diamond [4]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
Rb0.44660(3)0.33795(2)0.34703(3)0.03586(11)
O10.7034(2)0.30542(13)0.30666(16)0.0386(6)
C10.7869(3)0.3673(2)0.3013(3)0.0477(11)
H1A0.86070.35150.26640.057*
H1B0.81470.38410.37060.057*
C20.7224(3)0.4307(2)0.2443(3)0.0465(11)
H2A0.78280.47070.23040.056*
H2B0.68470.41210.17860.056*
O20.6287(2)0.46052(12)0.30345(16)0.0404(6)
C30.5591(4)0.5184(2)0.2503(3)0.0531(12)
H3A0.51140.49680.19060.064*
H3B0.61590.55730.22620.064*
C40.4717(4)0.5537(2)0.3211(3)0.0531(11)
H4A0.51960.57270.38230.064*
H4B0.42880.59710.28700.064*
N10.3790(3)0.49846(17)0.3511(2)0.0430(9)
H10.329(3)0.4852(19)0.295(2)0.052*
C50.3108(4)0.5236(2)0.4372(3)0.0581(12)
H5A0.26610.57090.41850.070*
H5B0.37060.53470.49540.070*
C60.2197(4)0.4658(2)0.4685(3)0.0576(12)
H6A0.17240.48630.52390.069*
H6B0.16030.45380.41050.069*
O30.2834(2)0.39923(13)0.50214(17)0.0406(6)
C70.2026(3)0.3442(2)0.5399(2)0.0475(10)
H7A0.14130.32800.48520.057*
H7B0.15720.36610.59540.057*
C80.2770(3)0.2783(2)0.5783(3)0.0445(10)
H8A0.34140.29530.63020.053*
H8B0.22250.24190.61060.053*
O40.3341(2)0.24242(13)0.49762(16)0.0392(6)
C90.3971(3)0.1748(2)0.5307(3)0.0437(10)
H9A0.33590.13470.54230.052*
H9B0.44630.18430.59540.052*
C100.4814(3)0.14978(19)0.4509(2)0.0411(9)
H10A0.51490.09910.46810.049*
H10B0.43360.14650.38430.049*
N20.5828(3)0.20283(17)0.4444(2)0.0366(8)
H20.625(3)0.2010(18)0.500(2)0.044*
C110.6684(3)0.18081(19)0.3684(2)0.0402(10)
H11A0.62150.17180.30260.048*
H11B0.71090.13330.38960.048*
C120.7631(3)0.2419(2)0.3565(3)0.0412(10)
H12A0.80040.25720.42390.049*
H12B0.83010.22290.31590.049*
C130.3113(3)0.29258(19)0.1439(3)0.0360(9)
C140.3567(3)0.3535(2)0.0906(2)0.0366(9)
C150.2813(3)0.4169(2)0.1046(3)0.0364(9)
C160.1884(3)0.39450(19)0.1681(3)0.0353(9)
C170.2064(3)0.31836(19)0.1926(2)0.0350(9)
C180.3655(3)0.21497(19)0.1515(3)0.0477(10)
H18A0.31950.18500.19630.072*
H18B0.36120.19210.08550.072*
H18C0.45040.21800.17750.072*
C190.4695(3)0.3515(2)0.0262(3)0.0499(10)
H19A0.50000.29960.02240.075*
H19B0.53510.38380.05740.075*
H19C0.44540.3699−0.04230.075*
C200.2902(3)0.4927(2)0.0539(3)0.0535(11)
H20A0.29110.53260.10530.080*
H20B0.21860.49970.00530.080*
H20C0.36660.49500.01830.080*
C210.0851(3)0.44569(19)0.1991(3)0.0496(11)
H21A0.11980.49470.22060.074*
H21B0.04440.42260.25550.074*
H21C0.02440.45290.14140.074*
C220.1287(3)0.27075(19)0.2596(3)0.0434(10)
H22A0.07920.30380.30040.065*
H22B0.18330.23950.30460.065*
H22C0.07340.23820.21710.065*

Source of material

The Zintl phase Rb12Si17 [5] was prepared from stoichiometric mixtures of the elements in sealed tantalum containers, which were encapsulated in an evacuated fused silica tube. The mixture was heated to 800 °C for 15 h and slowly cooled to room temperature with a rate of 0.5 °C/min. Bis(pentamethylcyclopentadienyl)zinc (ZnCp*2) was prepared as described in literature [6]. 113 mg Rb12Si17, 35 mg 1,4,10,13-tetraoxa-7,16-diazacyclooctadecane (diaza-18-crown-6; Merck, p. a.), and 25 mg Zn2Cp*2 were placed in into a dry Schlenk vessel and ca 2 mL NH3 (Westfalen, 99.999%, stored over elemental Na) were condensed on this. The obtained light yellow solution was stored at −70 °C for 11 months, after this time yellow crystals of the title compound were found. An appropriate crystal was selected under perfluoroalkylether in a stream of cold nitrogen gas.

Experimental details

The methylene and methyl H atoms have been refined using a riding model with Uiso set to 1.2 and 1.5 Ueq(C), respectively. The H atoms bound to N Atoms have been located from the difference Fourier map and refined with free atomic coordinates and an Uiso of 1.2 Ueq(N) [3].

Comment

During our investigations of the behaviour and reactivity of Si containing Zintl compounds in solution with the goal to synthesize transition metal complexes with Si clusters as ligands analogously to the known Ge compounds [7], liquid ammonia has been found to be a highly suitable solvent [8, 9] . For supporting the dissolution of the solid Zintl compounds often sequestering agents like crown ethers or cryptands are necessary. In the present experiment, diaza-18-crown-6 has been used to dissolve Rb12Si17 in liquid ammonia in presence of ZnCp*2. The title compound has been obtained as a crystallized product of a partial metathesis reaction, while the remaining ingredients, Zn2+ cations as well as [Si4]4− and [Si9]4− cluster anions, were not found as parts of crystalline phases after this experiment.

[Rb(diaza-18-crown-6)]Cp* crystallizes in space group P21/c with all atoms at general positions. The Rb+ cation is coordinated by one diaza-18-crown-6 molecule and one Cp* anion. While pure RbCp* is found to crystallize in polymeric “multidecker” strands [10], here the presence of the crown ether causes the formation of molecular units, similar to the effect of 18-crown-6 on RbCp* in THF [11]. The Rb+ cation is situated near the centre of the diaza-18-crown-6 molecule but apart from the ring plane shifted in direction of the Cp* anion as previously found for [Rb(diaza-18-crown-6)] complexes in Fulleride salts [12]. Rb is bound to the Cp* ligand via two short Rb—C bonds of 3.075(3) Å and 3.210(3) Å which are in the same range as those observed for the η5 coordination in [Rb(18-crown-6)]Cp* [11]. All atoms of the Cp* ligand are in plane and the cyclopentadienyl ring is a nearly perfect pentagon (C—C bond lengths between 1.398(4) Å and 1.418(4) Å, C—C—C angles between 107.3(3)° and 108.8(3)°) which differs clearly from the shape of the neutral Cp*–H molecule [13], suggesting that the negative charge is located at Cp*. Confirming the neutral nature of the diaza-18-crown-6 molecule, one H atom close to each N atom could have been located from the Fourier map. In contrast to the structure of the free diaza-18-crown-6 molecule [14], where the N—H bonds are parallel, both the N—H bonds of the [Rb(diaza-18-crown-6)] complex are directed almost perpendicular to the ring plane. Probably the orthogonal N—H bond hampers the formation of the symmetric η5 coordination, possibly by forming N—H⋯C hydrogen bonds instead.

Acknowledgements

This work was supported by the Deutsche Forschungsgesellschaft (DFG) and the Technische Universität München within the funding programme Open Access Publishing. We thank Kerstin Mayer for the preparation of ZnCp*2.

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Received: 2018-07-19
Accepted: 2018-09-09
Published Online: 2018-09-27
Published in Print: 2018-12-19

©2018 Thomas Henneberger et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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  54. The crystal structure of 2-(4-fluorophenyl)-1,3,4-oxadiazole, C8H5FN2O
  55. Crystal structure of (2,2′-bipyridine-κ2N,N′)bis(tri(p-tolyl)phosphine-κP)copper(I) tetrafluoroborate – 4,4′-bipyridine (2/1), C57H54BCuF4N3P2
  56. The crystal structure of 2,6-dimethyl-3,5-dinitrocyclohexa-2,5-diene-1,4-dione, C8H6N2O6
  57. The crystal structure of 2,3-dimethyl-1,4-dinitrobenzene – a Z′ = 4 structure, C8H8N2O4
  58. Crystal structure of [(1,2-η)-1,2,3,4,5-pentamethyl-cyclopenta-2,4-dien-1-yl] (1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-κ6N2,O4) rubidium (I), [Rb(diaza-18-crown-6)]Cp*, C22H41N2O4Rb
  59. Crystal structure of 2-(4-fluorophenyl)-N-phenyl-2-(phenylamino)ethanesulfonamide – toluene (1/0.5), C23.5H23FN2O2S
  60. Crystal structure of pyrene-4-aldehyde, C17H10O
  61. Crystal structure of 2-(furan-2-yl)-5-methyl-1,3-dioxane-5-carboxylic acid, C10H12O5
  62. Crystal structure of 2-(4-chlorophenyl)-3-phenyl-1,8-naphthyridine, C20H13N2Cl
  63. Crystal structure and photochromism of 1-(2-ethyl-5-formylthiophen-3yl)-2-(2-cyano-1,5-dimethyl-4-pyrrl)-3,3,4,4,5,5-hexafluorocyclopent-1-ene, C19H14F6N2OS
  64. Crystal structure of 2-(4-bromophenyl)-1,3-dimethyl-1H-perimidin-3-ium iodide, C19H16BrIN2
  65. Crystal structure of 2-(4-(dimethylamino)phenyl)-10-methylacridin-9(10H)-one, C22H20N2O
  66. Crystal structure of 4-(acetoxymethyl)-6-(3-acetyl-3-(4-fluorophenyl)thioureido)cyclohex-4-ene-1,2,3-triyl triacetate, C24H26FN2O9S
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