Startseite Naturwissenschaften Synthesis and crystal structure of methyl 2-((5-bromo-4-(4-cyclopropylnaphthalen-1-yl)-4H-1,2,4-triazol-3-yl)thio)acetate, C18H16BrN3O2S
Artikel Open Access

Synthesis and crystal structure of methyl 2-((5-bromo-4-(4-cyclopropylnaphthalen-1-yl)-4H-1,2,4-triazol-3-yl)thio)acetate, C18H16BrN3O2S

  • Yuan Xian-Zhu , Qiu Ting-Qun , Li Yan-Hua , Guo Jin EMAIL logo und Yi Zhi-Qiang ORCID logo EMAIL logo
Veröffentlicht/Copyright: 7. August 2024

Abstract

C18H16BrN3O2S, triclinic, P (no. 2), a = 11.5820(4) Å, b = 12.0492(4) Å, c = 14.3048(5) Å, α = 73.673(3)°, β = 88.190(3)°, γ = 72.686(3)°, V = 1826.02(12) Å3, Z = 4, R gt (F) = 0.0580, wRref (F 2) = 0.1565, T = 296(2) K.

CCDC no.: 2374461

Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal: Colorless platelet
Size: 0.22 × 0.15 × 0.12 mm
Wavelength: Mo Kα radiation (0.71073 Å)
μ: 2.38 mm−1
Diffractometer, scan mode: Multiwire proportional, φ and ω
θ max, completeness: 25.0°, >99 %
N(hkl)measured, N(hkl)unique, R int: 19,974, 6,421, 0.038
Criterion for I obs, N(hkl)gt: I obs > 2σ(I obs), 4,199
N(param)refined: 451
Programs: Bruker, 1 SHELX, 2 , 3 Diamond 4
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Atom x y z U iso*/U eq
Br1 0.85099 (5) 0.69458 (6) 0.47856 (5) 0.0696 (2)
Br2 1.65220 (7) −0.05384 (7) 0.11585 (5) 0.0923 (3)
S1 1.29257 (12) 0.57124 (13) 0.31533 (10) 0.0578 (4)
S2 1.92178 (14) 0.22632 (13) −0.09661 (10) 0.0631 (4)
O1 1.2991 (4) 0.3082 (4) 0.3375 (3) 0.0839 (13)
O2 1.3269 (4) 0.3224 (3) 0.1791 (3) 0.0717 (11)
O3 1.8655 (5) 0.4044 (5) 0.0260 (4) 0.118 (2)
O4 2.0390 (4) 0.3136 (4) 0.1130 (3) 0.0807 (12)
N1 1.0823 (3) 0.6456 (3) 0.4003 (3) 0.0403 (9)
N2 0.9482 (4) 0.6001 (4) 0.3238 (3) 0.0547 (11)
N3 1.0610 (4) 0.5662 (4) 0.2836 (3) 0.0542 (11)
N4 1.7766 (4) 0.0955 (4) −0.0060 (3) 0.0502 (10)
N5 1.8518 (4) 0.0196 (4) 0.1464 (3) 0.0661 (13)
N6 1.9232 (4) 0.0884 (4) 0.0929 (3) 0.0624 (12)
C1 1.3831 (7) 0.8593 (9) 0.6671 (6) 0.115 (3)
H1A 1.384429 0.931709 0.683571 0.139*
H1B 1.437161 0.839139 0.617145 0.139*
C2 1.3639 (7) 0.7578 (7) 0.7465 (5) 0.097 (2)
H2A 1.405834 0.675732 0.744817 0.116*
H2B 1.353058 0.768381 0.811298 0.116*
C3 1.2685 (5) 0.8328 (5) 0.6701 (4) 0.0639 (15)
H3 1.202443 0.890637 0.692049 0.077*
C4 1.2278 (4) 0.7821 (4) 0.5969 (3) 0.0448 (12)
C5 1.1714 (4) 0.8634 (4) 0.5055 (3) 0.0385 (10)
C6 1.1608 (4) 0.9878 (4) 0.4788 (4) 0.0497 (12)
H6 1.192726 1.018675 0.521190 0.060*
C7 1.1049 (5) 1.0636 (4) 0.3926 (4) 0.0555 (14)
H7 1.098763 1.145588 0.376766 0.067*
C8 1.0564 (4) 1.0200 (4) 0.3273 (4) 0.0483 (12)
H8 1.018103 1.072903 0.268479 0.058*
C9 1.0651 (4) 0.9000 (4) 0.3497 (3) 0.0400 (11)
H9 1.032442 0.871681 0.305857 0.048*
C10 1.1231 (4) 0.8182 (4) 0.4385 (3) 0.0348 (10)
C11 1.1339 (4) 0.6930 (4) 0.4660 (3) 0.0381 (10)
C12 1.1898 (5) 0.6169 (5) 0.5512 (4) 0.0542 (13)
H12 1.196759 0.534816 0.566611 0.065*
C13 1.2376 (5) 0.6620 (5) 0.6170 (4) 0.0562 (14)
H13 1.276632 0.608680 0.675422 0.067*
C14 0.9651 (4) 0.6455 (4) 0.3928 (3) 0.0455 (12)
C15 1.1374 (4) 0.5938 (4) 0.3313 (3) 0.0434 (11)
C16 1.3093 (5) 0.4961 (5) 0.2216 (4) 0.0618 (14)
H16A 1.243420 0.540556 0.172520 0.074*
H16B 1.384268 0.499683 0.190556 0.074*
C17 1.3104 (5) 0.3654 (5) 0.2556 (4) 0.0587 (14)
C18 1.3321 (6) 0.1966 (5) 0.1963 (6) 0.093 (2)
H18A 1.344304 0.175459 0.136089 0.139*
H18B 1.398074 0.145882 0.242570 0.139*
H18C 1.257468 0.185218 0.221692 0.139*
C19 1.4901 (7) 0.2985 (9) −0.4410 (4) 0.104 (3)
H19A 1.423724 0.361120 −0.482204 0.125*
H19B 1.566146 0.317293 −0.444200 0.125*
C20 1.4952 (6) 0.1724 (9) −0.4276 (5) 0.104 (3)
H20A 1.574434 0.113229 −0.422357 0.124*
H20B 1.431980 0.157067 −0.460370 0.124*
C21 1.4611 (5) 0.2271 (5) −0.3463 (4) 0.0593 (14)
H21 1.374588 0.247099 −0.334202 0.071*
C22 1.5433 (4) 0.1932 (4) −0.2572 (3) 0.0462 (12)
C23 1.6523 (4) 0.1064 (5) −0.2446 (4) 0.0519 (13)
H23 1.676351 0.066866 −0.292428 0.062*
C24 1.7294 (4) 0.0748 (4) −0.1619 (3) 0.0479 (12)
H24 1.803516 0.014971 −0.155392 0.058*
C25 1.6967 (4) 0.1307 (4) −0.0918 (3) 0.0435 (11)
C26 1.5859 (5) 0.2244 (4) −0.1003 (3) 0.0486 (12)
C27 1.5521 (6) 0.2886 (5) −0.0296 (4) 0.0678 (16)
H27 1.603812 0.270458 0.024682 0.081*
C28 1.4432 (6) 0.3775 (6) −0.0413 (5) 0.083 (2)
H28 1.420455 0.417751 0.006217 0.100*
C29 1.3670 (6) 0.4081 (6) −0.1222 (5) 0.083 (2)
H29 1.293641 0.469059 −0.128989 0.099*
C30 1.3976 (5) 0.3503 (5) −0.1923 (4) 0.0660 (16)
H30 1.345147 0.372983 −0.246850 0.079*
C31 1.5084 (4) 0.2559 (4) −0.1840 (3) 0.0467 (12)
C32 1.7686 (5) 0.0260 (5) 0.0850 (4) 0.0554 (13)
C33 1.8753 (5) 0.1321 (4) 0.0026 (3) 0.0489 (12)
C34 2.0253 (5) 0.2659 (5) −0.0326 (4) 0.0663 (15)
H34A 2.085713 0.192396 0.003863 0.080*
H34B 2.066765 0.313856 −0.079473 0.080*
C35 1.9647 (6) 0.3372 (5) 0.0373 (5) 0.0665 (16)
C36 1.9926 (7) 0.3760 (6) 0.1853 (5) 0.104 (3)
H36A 2.053495 0.352615 0.237062 0.156*
H36B 1.971436 0.462017 0.155679 0.156*
H36C 1.922060 0.354962 0.211324 0.156*

1 Source of materials

The methyl 2-{[4-(4-cyclopropyl-1-naphthyl)-4H-1,2,4-triazole-3-yl]thio}acetate (40.0 g, 0.113 mol) was dissolved in 360 mL of dry dichloromethane at room temperature, and stirred evenly. Then, carbonyldiimidazole (0.92 g, 5.67 mmol) was added in batches, and the mixture was stirred for 30 min. Cooling to 0 °C, adding N-bromosuccinimide (22.2 g, 0.125 mol) in batches, and controlling the temperature to 0 °C for 40 min. The reaction was monitored by TLC. After the reaction, 300 mL of 10 % sodium sulfite aqueous solution was added and stirred for 1 h. Separate the organic layer, wash it once with 200 mL water and 200 mL saturated sodium chloride solution respectively, and dry the organic layer with anhydrous sodium sulfate. The solvent was evaporated under reduced pressure to obtain a brownish yellow oil. Using ethyl acetate as eluent, the product was separated by rapid column chromatography, and the solvent was evaporated under reduced pressure to obtain light yellow solid product (35.9 g) with a yield of 73.5 %.

2 Experimental details

All H atoms were included in calculated positions and refined as riding atoms, with C–H = 0.90–0.97 Å with U iso(H) = 1.5 U eq(C) for methyl H atoms and 1.2 U eq(C) for all other H atoms.

3 Comment

Lesinurad sodium was first developed by Aread Biosciences and then continued to be developed by Astra Zeneca. 5 Lesinurad sodium, whose chemical name is 2-{[5-bromo-4-(4-cyclopropylnaphthalene-1-yl)-4h-1,2,4-triazol-3-yl]thio}acetic acid, is the first inhibitor of uric acid selective reabsorption transporter-1(URAT1). Lesinurad sodium is mainly used for treating hyperuricemia related to gout in combination with xanthine oxidase inhibitors (such as allopurinol and febuxostat). 6 , 7 , 8 The optimization of the process of lesinurad sodium and its derivatives has attracted extensive attention of researchers. 9 , 10 , 11 In order to make it more suitable for industrial production, we have been devoted to its synthesis and process optimization of lesinurad sodium. Recently, we reported the synthesis and crystal structures of two intermediates of lesinurad sodium. 12 , 13 Herein we reveal the synthesis and crystal structure of the key intermediate of lesinurad sodium methyl 2-((5-bromo-4-(4-cyclopropylnaphthalen-1-yl)-4H-1,2,4-triazol-3-yl)thio)acetate.

In the molecules of the title structure, both bond lengths and angles are very similar to those given in the literature. 12 , 13 , 14 In the asymmetric unit of the title compound, there are two molecules, molecule A and molecule B. In molecule A, the dihedral angles formed by the naphthalene ring plane, the 1,2,4-triazole plane and the cyclopropyl group plane are 51.7(4)°, are 69.7(4)°, 79.3(2)° and 63.5(1)°, respectively. The torsion angles of N1–C15–S1–C16, C15–S1–C16–C17, S1–C16–C17–O2, C16–C17–O2–C18, N4–C33–S2–C34, C33–S2–C34–C35, S2–C34–C35–O4 and C34–C35–O4–C36 are 177.4°, −75.6°, −178.1°, 179.3°, 167.2°, −64.2°, 148.8° and 179.8°, respectively. Intermolecular C–H⋯S hydrogen bonds connect two adjacent the title structures into a dimer. Dimers are further stabilized in the stacking structure by ππ stacking.


Corresponding authors: Guo Jin, School of Chemistry and Chemical Engineering, Jinggangshan Univeristy, Ji’an, Jiangxi, 343709, People’s Republic of China, E-mail: and Yi Zhi-Qiang, Ji’an Central People’s Hospital, Ji’an, Jiangxi, 343700, People’s Republic of China, E-mail:

Acknowledgments

X-ray data were collected at Instrumental Analysis Center Nanchang Hangkong University, Nanchang, 330063, People’s Republic of China.

  1. Author contributions: All the authors have accepted responsibility for the entire content of this submitted manuscript and approved submission.

  2. Conflict of interest statement: The authors declare no conflicts of interest regarding this article.

  3. Research funding: This research was supported by the National Natural Science Foundation of China (22168018), the Science and Technology Plan Project of Ji’an (20233–043995).

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Received: 2024-06-19
Accepted: 2024-07-30
Published Online: 2024-08-07
Published in Print: 2024-10-28

© 2024 the author(s), published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 International License.

Artikel in diesem Heft

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  2. Editorial
  3. Editorial 2024 – New developments and changes of Zeitschrift für Kristallographie – New Crystal Structures
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  46. Crystal structure of 1-(5-(benzo[d][1,3]dioxol-5-yl)-4-benzyl-1-(4-bromophenyl)-4,5-dihydro-1H-1,2,4-triazol-3-yl)ethan-1-one, C24H20BrN3O3
  47. The crystal structure of (Z)-3′-(2-(1-(3,4-dimethyl-phenyl)-3-methyl-5-oxo-1,5-dihydro-4H-pyrazol-4-ylidene)hydrazinyl)-2′-hydroxy-[1,1′-biphenyl]-3-carboxylicacid ─ methanol (1/1), C26H26N4O5
  48. Crystal structure of (S)-1-phenylpropan-1-aminium (S)-(1-phenylpropyl)carbamate C19H26N2O2
  49. Synthesis and crystal structure of methyl 2-((5-bromo-4-(4-cyclopropylnaphthalen-1-yl)-4H-1,2,4-triazol-3-yl)thio)acetate, C18H16BrN3O2S
  50. The crystal structure of trichlorobis(pyridine-2,6-dithio-κS-carbomethylamido)antimony(III), [SbCl3(C9H11N3S2)2]
  51. Crystal structure of 1,8-dihydroxy-3-{[(triphenylstannyl)oxy]carbonyl} anthracene-9,10-dione, C33H22O6Sn
  52. The crystal structure of (E)-4-(2-(pyridin-4-ylmethylene)hydrazine-1-carbonyl)pyridin-1-ium-2-olate dihydrate, C12H14N4O4
  53. The crystal structure of 6-amino-pyridinium-2-carboxylate, C6H6N2O2
  54. The crystal structure of catena-poly[aqua-nitrato-κ3O,O:O′′-(1,10-phenanthroline-κ2N,N)sodium(I)], C24H18N6O7Na2
  55. Retractions
  56. Retraction of: Crystal structure of bis[diaquaisonicotinatosamarium(III)]-µ-isonicotinato-[diisonicotinatocopper(II)], CuSm2(C6H4NO2)8(H2O)4
  57. Retraction of: Crystal structure of aqua(2,2-bipyridine-k 2 N:N′)(nitrato)-(4-aminobenzoato)cadmium(II) nitrate, [Cd(H2O)(NO3)(C10H8N2)(C7H7NO2)][NO3]
Heruntergeladen am 21.12.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2024-0253/html
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