Startseite Crystal structure of N-(3-methylphenyl)(propan-2-yloxy)carbothioamide, C11H15NOS
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Crystal structure of N-(3-methylphenyl)(propan-2-yloxy)carbothioamide, C11H15NOS

  • Chien Ing Yeo und Edward R. T. Tiekink EMAIL logo
Veröffentlicht/Copyright: 4. April 2019

Abstract

C11H15NOS, monoclinic, C2/c (no. 15), a = 21.0452(12) Å, b = 6.1447(4) Å, c = 17.1892(10) Å, β = 93.3520(10)°, V = 2219.0(2) Å3, Z = 8, Rgt(F) = 0.0291, wRref(F2) = 0.0854, T = 100(2) K.

CCDC no.: 1903611

The molecular structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Crystal:Colourless prism
Size:0.20 × 0.11 × 0.09 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:0.26 mm−1
Diffractometer, scan mode:Bruker SMART APEX, ω
θmax, completeness:27.5°, >99%
N(hkl)measured, N(hkl)unique, Rint:13386, 2545, 0.024
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 2283
N(param)refined:133
Programs:Bruker [1], SHELX [2], [3], [4], WinGX/ORTEP [5]
Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
S10.35255(2)−0.21699(5)0.00951(2)0.01905(10)
O10.36789(4)0.15300(15)0.08977(5)0.01890(19)
N10.26773(5)0.03575(17)0.07219(6)0.0165(2)
H1N0.2418(6)−0.063(2)0.0530(8)0.020*
C10.32909(5)0.00139(19)0.05886(6)0.0157(2)
C20.23881(5)0.19710(19)0.11801(6)0.0148(2)
C30.18019(5)0.1410(2)0.14645(7)0.0171(2)
H30.16250.00170.13480.021*
C40.14727(6)0.2859(2)0.19151(7)0.0186(2)
C50.17389(6)0.4890(2)0.20825(7)0.0188(2)
H50.15230.58920.23950.023*
C60.23190(6)0.5457(2)0.17949(7)0.0188(2)
H60.24950.68520.19110.023*
C70.26468(6)0.40209(19)0.13412(7)0.0170(2)
H70.30420.44290.11430.020*
C80.08445(7)0.2229(2)0.22276(9)0.0296(3)
H8A0.08480.25820.27840.044*
H8B0.07760.06630.21560.044*
H8C0.05000.30320.19460.044*
C90.43606(5)0.1434(2)0.07709(7)0.0195(3)
H90.4510−0.01110.07960.023*
C100.46806(7)0.2724(3)0.14296(9)0.0334(3)
H10A0.45680.21050.19290.050*
H10B0.45380.42410.13950.050*
H10C0.51430.26650.13930.050*
C110.44799(6)0.2392(2)−0.00183(8)0.0236(3)
H11A0.42800.1470−0.04280.035*
H11B0.49390.2468−0.00810.035*
H11C0.42980.3858−0.00570.035*

Source of material

All chemicals and solvents were used as purchased without purification. The reaction was carried out under ambient conditions. The melting point was determined on a Krüss KSP1N melting point meter. The IR spectrum was obtained on a Perkin Elmer Spectrum 400 FT Mid-IR/Far-IR spectrophotometer from 4000 to 400 cm−1; abbreviation: s, strong.

Preparation of the title compound: m-Tolyl isothiocyanate (Merck; 2.5 mmol, 0.34 mL) was added to NaOH (Merck; 2.5 mmol, 0.10 g) in i-PrOH (Merck; 5 mL) and the mixture was left for stirring at room temperature for 2 h, followed by the addition of excess 5 M HCl solution. The resulting mixture was stirred for a further 1.5 h. The final product was extracted with chloroform (Merck; 20 mL) and left for evaporation at room temperature, yielding brown crystals after 3 weeks. M.pt: 323–325 K. IR (cm−1): 3220 (s) ν(N—H), 1491 (s) ν(C—N), 1207 (s) ν(C—O), 1091 (s) ν(C=S).

Experimental details

The C-bound H atoms were geometrically placed (C—H = 0.95–1.00 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The N-bound H-atom was located in a difference Fourier map but was refined with a distance restraint of N—H = 0.88±0.01 Å, and with Uiso(H) set to 1.2Uequiv(N). Owing to poor agreement, the (9̄ 1 1) reflection was omitted from the final cycles of refinement.

Comment

A recent overview of the known crystal structures for molecules of the general formula, ROC(=S)N(H)R′′ (R/R′′ = alkyl and/or aryl), i.e. the alkoxycarbothioamides, showed a high degree of concordance in their structural features [6]. Most notable was the universal adoption of a thioamide tautomer. The majority of structures featured a syn-disposition of the thione-S and thioamide-N—H atoms. The exceptions occur when an anti-disposition of the thione-S and thioamide-N—H atoms is found as, for example, in the structure where R = Me and R′′ = 4-C(= O)Me-phenyl [7], allowing for the formation of intermolecular N—H⋯O hydrogen bonding, and where R = 4-pyridylphenyl and R′′ = phenyl [8], allowing for intermolecular N—H⋯N hydrogen bonding. Herein, as a continuation of structural studies of this class of compound [6], [7], [9], the crystal and molecular structures of the compound with R = iPr and R′′ = 3-Me-phenyl are described.

The molecular structure is shown in the figure (70% displacement ellipsoids) and features the normally observed [6] syn-disposition of the thione-S and thioamide-N—H atoms. In accord with expectation, the central C1, N1, O1, S1 residue is planar with the r.m.s. deviation being 0.0044 Å. The dihedral angle between the central plane and appended 3-tolyl group is 23.06(5)°. Evidence for the thioamide tautomer is found in the magnitude of the C1=S1 [1.6772(12) Å] and C1—N1 [1.3412(15) Å] bond lengths, and in the location of the thioamide-N—H atom in the crystallographic refinement. The angles subtended at the quaternary-C1 atom follow the expected trends with S1—C1—O1 [124.81(9)°] being wider than S1—C1—N1 [121.82(9)°] and each of these being wider than O1—C1—N1 [113.36(10)°].

The syn-disposition of the thione-S1 and thioamide-N—H atoms allows for the formation of thioamide-NH⋯S(thione) hydrogen bonds in the molecular packing [N1–H1n⋯S1i: H1n⋯S1i = 2.584(13) Å, N1⋯S1i = 3.4352(11) Å with angle at H1n = 167.0(11)° for symmetry operation i: 1/2 − x, −1/2 − y, − z]. As these occur between centrosymmetrically related molecules, eight-membered {⋯HNCS}2 synthons ensue. Intermolecular points of contact of the type tolyl-C—H⋯π [C6—H6⋯Cg(C2–C7)ii: H6⋯Cg(C2–C7)ii = 2.80 Å, C6⋯Cg(C2–C7)ii = 3.4597(13) Å and angle at H6 = 127° for ii: 1/2 − x, 1/2 + y, 1/2 − z] and parallel C=S⋯π [C1—S1⋯Cg(C2–C7)iii: S1⋯Cg(C2–C7)iii = 3.8929(6) Å, C1⋯Cg(C2–C7)iii = 3.9582(12) Å and angle at S1 = 79.85(4)° for iii: 1/2 − x, 1/2 − y, − z], each involving the 3-tolyl ring, serve to link molecules into a supramolecular layer in the bc-plane. Layers stack along the a axis direction without directional interactions between them.

The most closely related structures in the literature are the polymorphic structures EtOC(= S)N(H)(3-Me-phenyl) [6], [10], i.e. where iPr is substituted with Et; both polymorphs are monoclinic. In the P21/c form [6], there are two independent molecules in the asymmetric unit whereas in the C2/c form [10], one molecule comprises the asymmetric unit. Not unexpectedly, similar trends in conformation and geometric parameters are evident, along with supramolecular association via {⋯HNCS}2 synthons, as described above.

Acknowledgements

The University of Malaya’s X-ray laboratory is thanked for the intensity data. Sunway University is thanked for support of crystal engineering and biological studies of thiocarbamides and their metal complexes.

References

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Received: 2019-02-20
Accepted: 2019-03-16
Published Online: 2019-04-04
Published in Print: 2019-06-26

© 2019 Chien Ing Yeo et al., published by De Gruyter, Berlin/Boston

This work is licensed under the Creative Commons Attribution 4.0 Public License.

Artikel in diesem Heft

  1. Frontmatter
  2. Crystal structure of (E)-2-(1-((2-aminophenyl)imino)ethyl)-5-fluorophenol, C14H13FN2O
  3. Crystal structure of (E)-2-(1-((2-aminophenyl)imino)ethyl)-4,6-dichlorophenol, C14H12Cl2N2O
  4. The crystal structure of (E)-1-(4-methoxyphenyl)-3-(2-nitrophenyl)triaz-1-ene C8H8N2O4
  5. Crystal structure of (E)-2-(((6-bromopyridin-2-yl)methylene)amino)-3′,6′-bis(ethylamino)-2′,7′-dimethylspiro[isoindoline-1,9′-xanthen]-3-one—methanol (1:1), C32H30N5O2Br ⋅ CH4O
  6. Crystal structure of 2,4-pentanedione bis(2,4-dinitrophenylhydrazone), C17H16N8O8
  7. Crystal structure of sodium morpholine-4-carbodithioate, (C5H12NNaO3S2)
  8. Crystal structure of 1,1′-(hexane-1,6-diyl)bis(3-ethyl-1H-imidazol-3-ium) bis(hexafluorido phosphate), C16H28F12N4P2
  9. Crystal structure of 5-(4-chlorophenyl)-3-(4-fluorophenyl)-1-phenyl-4,5-dihydro-1H-pyrazole, C21H16ClFN2
  10. Crystal structure of catena-poly[diaqua-bis(3-carboxy-5-methoxybenzoato-κO)-(1,2-bis(imidazol-1-yl)ethane-κ2N:N′)cobalt(II)], C26H28CoN4O12, [Co(C9H6O5)2(H2O)2(C8H10N4)]
  11. The crystal structure of 3-cyclohexyl-1,5-dioxaspiro[5.5]undecane-2,4-dione, C15H22O4
  12. Crystal structure of (2,4-dimethoxybenzyl)triphenylphosphonium trifluoroacetate — trifluoroacetic acid (1/1), C31H27F6O6P
  13. Crystal structure of 4-tert-butyl-1-(2,6-dimethylphenyl)-1H-1,2,3-triazole, C14H19N3
  14. Crystal structure of 1,1′-methylenebis(4-tert-butylpyridinium) tetrachloridocobaltate(II) – dichloromethane (1:1), C20H30Cl6CoN2
  15. Crystal structure of (4,4′-(ethane-1,2-diylbis((nitrilo)(2-furylmethylylidene)))bis(3-methyl-1-phenyl-1H-pyrazol-5-olato-κ4N,N′,O,O′))-nickel(II)), C32H26N6NiO4
  16. Synthesis and crystal structure of bis{((E)-((4-((E)-1-(benzyloxyimino)ethyl)phenyl)imino)methyl)-2-phenolato-κ2N,O}copper(II), C44H38CuN4O4
  17. Crystal structure of catena-poly[diaqua-bis(3,5-dichloropyridine-4-carboxylato-κ1O)-bis(μ2-4,4′-bipyridine-κ2N:N′)cobalt(II)], C22H16Cl4CoN4O6
  18. The crystal structure of 2-(4-chloro-2,6-dinitrophenyl)-1-(4-chloro-3,5-dinitrophenyl)diazene 1-oxide, C12H4Cl2N6O9
  19. The crystal structure of 3-(1H-benzo[d]imidazol-2-yl)-7-chloro-1-cyclopropyl-6-fluoro-1,4-dihydroquinolin — dimethylsulfoxide (1/1), C21H19ClFN3O2S
  20. The crystal structure of dichlorido-bis(1-butyl-1H-imidazole-κN)zinc(II), C14H24Cl2ZnN4
  21. (Z)-N-tert-butyl-1-(2-(3,5-dichlorobenzamido)phenyl) methanimine oxide, C18H18Cl2N2O2
  22. Crystal structure of diaqua-bis(3-carboxy-5-bromoisophthalato-κO)-bis(1-(3-(1H-benzo[d]imidazol-1-yl)propyl)-1H-benzo[d]imidazol-3-ium-κN)nickel(II) bis(3-carboxy-5-bromoisophthalate), C66H54Br4N8NiO18
  23. Crystal structure of poly[aqua(μ2-5-methoxyisophthalato-κ2O,O′:O′′)-(1,2-bis(imidazol-1′-yl)ethane-κ2N:N′)cobalt(II), C34H36Co2N8O12
  24. Crystal structure of poly[diaqua-bis(μ2-1-(4-(1H-imidazol-1-yl)benzyl)-1H-1,2,4-triazole-κ2N:N′)manganese(II)] terephthalate tetrahydrate, MnC32H38N10O10
  25. Crystal structure of the fluorescent fipronil derivative 5,5′-(methylenebis(azanediyl))bis(1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-((trifluoromethyl)sulfinyl)-1H-pyrazole-3-carbonitrile), C25H6N8O2Cl4F12S2
  26. Crystal structure of the phosphorescent complex diethyldithiophosphonato-κ2S,S′-bis(2-phenylpyridinato-κ2C,N)iridium(III), C26H26N2O2PS2Ir
  27. The crystal structure of 4,10-diethoxy-6H,12H-6,12-epoxydibenzo[b,f][1,5]dioxocine, C18H18O5
  28. Crystal structure of dichlorido-bis(N-benzyl-2-(quinolin-8-yloxy)acetamide-κ2N,O)copper(II) — ethyl acetate (1/1), C38H36N4O6Cl2Cu
  29. Synthesis and crystal structure of bis{4-methyl-2-((E)-((4-((E)-1-(benzyloxyimino)ethyl)phenyl)imino)methyl)phenolato-κ3N,O,O}copper(II), C92H84Cu2N8O8
  30. The crystal structure of 1,3,5-trinitro-4,6-diazidobenzene, C6HN9O6
  31. Crystal structure 1-cinnamyl-2-((Z)-styryl)-1H-benzo[d]imidazole — methanol (1/1), C24H20N2 ⋅ CH4O
  32. The crystal structure of poly[m2-aqua-tetraaqua-bis(m9-4-formylbenzene-1,3-disulfonato)tetrasodium(I) hydrate, C14H18O19S4Na4
  33. Crystal structure of 2-((2,8-bis(trifluoromethyl)quinolin-4-yl)(hydroxy)methyl)piperidin-1-ium trifluoroacetate, [C17H17F6N2O][C2F3O2]
  34. The crystal structure of bis(ferrocenecarboxylato-κ2O,O′)bis[4-(dimethylamino)pyridine-κN]copper(II) — acetonitrile(1/2), C40H44CuO4Fe2N6
  35. Crystal structure of poly[di-μ2-aqua)-diaqua-bis(μ6-4,4′,4′′-(benzene-1,3,5-triyltris(oxy))tribenzoato-κ6O1:O2:O3:O3:O5:O6)tricadmium(II)] dihydrate, C54H42Cd3O24
  36. The crystal structure of dichlorido(1,3-bis(2,6-diisopropyl-phenyl)-1H-3λ4-imidazol-2-yl)(3-phenyl-pyridine-κN)palladium(IV), C38H45N3Cl2Pd
  37. The crystal structure of 2-chloro-4-(prop-2-yn-1-yloxy)-6-phenyl-1,3,5-triazine, C12H8ClN3O
  38. The crystal structure of 2,6-di-tert-butyl-4-(phenyl(phenylsulfonyl)methyl)phenol, C27H32O3S
  39. Crystal structure of bis{μ2-bis{(((((1-methoxyimino)ethyl)phenyl)imino)methyl)-2-phenolato-κ3N,O:O}copper(II)}, C68H68Cu2N8O8
  40. Crystal structure of catena-poly[tetraaqua-bis(μ2-2-(4-carboxylatophenoxy)benzoato-κ2O:O′)-pentakis(pyridine-κ1N)dinickel(II)], C53H47N5Ni2O13
  41. Synthesis and crystal structure of 1-(2,6-dichloro-4-trifluoromethyl-phenyl)-5-(3-methoxy-benzylamino)-4-trifluoromethanesulfinyl-1H-pyrazole-3-carbonitrile, C20H12N4Cl2F6O2S
  42. Redetermination of the crystal structure of bis(μ2-di-ethyldithiocarbamato-κ3S,S′:S3S:S: S′)-hexacarbonyl-di-rhenium(I), C16H20N2O6Re2S4
  43. The crystal structure of (E)-N′-((2-hydroxynaphthalen-1-yl)methylene)-2-phenylacetohydrazide, C19H16O2N2
  44. Crystal structure of 6-hydroxy-4,8,11b-trimethyltetradecayhdro-8,11-epoxy-6a,9-methanocyclohepta[a]naphthalene-4-carboxylic acid – methanol (1/1), C20H30O4
  45. The crystal structure of aqua-bis(3-acetyl-2-oxo-2H-chromen-4-olato-κ2O,O′)zinc(II) monohydrate, C22H18O10Zn
  46. Crystal structure of poly[bis(μ2-4-bromoisophthalate-κ2O:O′)-tris(μ2-1-(3-((1H-1,2,4-triazol-1-yl)methyl)benzyl)-1H-1,2,4-triazole-κ2N:N′)dicobalt(II)] monohydrate, C26H23CoN9O5Br
  47. A cyclic I102− anion in the layered crystal structure of theophyllinium pentaiodide, C7H9I5N4O2
  48. Crystal structure of catena-poly[diaqua-bis(μ2-4-((4-(pyridin-2-ylmethoxy)phenyl)diazenyl)benzoato-κ3O,O′:N)cadmium(III)], Cd(C19H14O3N3)2(H2O)
  49. Crystal structure of catena-poly[(μ2-4,4′-bipyridyl-κN,N′)-bis(O,O′-dimethyldithiophosphato-κS)-zinc(II)], {C14H20N2O4P2S4Zn}n
  50. Crystal structure of 3-amino-2-hydroxy-6-methoxybenzamide hydrate, C16H22N4O7
  51. Crystal structure of hemikis(cyclohexane-1,4-diammonium) (pyridine-2-carboxylate), [C6H16N2]0.5[C6H4NO2]
  52. Crystal structure of 2-chloro-4-(prop-2-yn-1-yloxy)-6-(thiophen-2-yl)-1,3,5-triazine, C10H6ClN3OS
  53. The crystal structure of 3-butyl-1-methyl-1H-imidazol-3-ium catena-poly[tris(μ2-bromido-κ2Br:Br)lead(II)], C8H15Br3N2Pb
  54. Crystal structure of 3-(5-amino-1H-1,2,4-triazol-3-yl)-1-(piperidin-1-yl)propan-1-one, C10H17N5O
  55. Crystal structure of aqua-2,2′,2′′-(((nitrilo-κN-tris(ethane-2,1-diyl))tris(azanylylidene-κ3N′,N′′,N′′′))tris(methanylylidene))tris(4-chlorophenolato-κ3O,O′,O′′)neodymium(III), C27H26Cl3N4NdO4
  56. Crystal structure of dichlorido-(μ2-2,2′-(diazene-1,2-diyl)bis(benzen-1-ido)-κ2C:C′)dimercury(II), C12H8Cl2Hg2N2
  57. Crystal structure of (3E,5E)-3,5-bis(4-cyanobenzylidene)-1-((4-fluorophenyl)sulfonyl)piperidin-4-one, C27H18FN3O3S
  58. Crystal structure of dichlorido(pyridine-κN)(2,4,6-tri-2-pyridyl-1,3,5-triazine-κ3N2,N1,N6)nickel(II), C23H17Cl2N7Ni
  59. Redetermination of the crystal structure of tetrakis(4-chlorobenzyl)tin(IV), C28H24Cl4Sn
  60. The crystal structure of 2,6-bis(pyridin-1-ium-3-ylmethyl)hexahydro-4,8-ethenopyrrolo-[3,4-f] isoindole-1,3,5,7-tetrone tetrachloridocuprate(II) monohydrate, C24H24Cl4CuN4O5
  61. Crystal structure of cyclo-[octaaqua-tetrakis(μ2-5,5′-(1H-imidazole-4,5-diyl)bis(tetrazol-2-ido)-κ4N,N′,N′′,N′′′)tetramagnesium(II)], C20H24N40O8Mg4
  62. The crystal structure of a matrine derivative, 13-(4-Cl-pyrrole)-matrine, C18H26ClN4O
  63. Crystal structure of (dibenzyl sulphoxide-κO)bis(2-chlorobenzyl-κC1)dichloridotin(IV), C28H26Cl4OSSn
  64. Crystal structure of catena-poly[(μ2-azido-κ2N:N)(μ2-4-cyanobenzoato-κ2O:O′)-(μ2-methanol-κ2O:O)copper(II)], C9H8CuN4O3
  65. Crystal structure of 1,1′-dibenzyl-3,3′-dicyano-1,1′,4,4′-tetrahydro-4,4′-bipyridine, C26H22N4
  66. Crystal structure of (2-bromobenzyl)((1-bromonaphthalen-2-yl)methyl)sulfane, C18H14Br2S
  67. Crystal structure of 2-(4-ammoniocyclohexyl)-3-(pyridin-2-yl)imidazo[1,5-a]pyridin-2-ium 2-[(2-carboxylatophenyl)disulfanyl]benzoate dihydrate, [C18H22N4][C14H8O4S2] ⋅ 2H2O
  68. Crystal structure of (E)-N-((3R,5S,10S, 13S,14S,17S)-17-((S)-1-(dimethylamino)ethyl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-3-yl)-2-methylbut-2-enamide – water – methanol (1/1/1), C29H54N2O3
  69. Crystal structure of methyl 2-(4-(3-(2,4-difluorophenyl)pyrazolo[1,5-a]pyrimidin-6-yl)phenyl)acetate, C21H15F2N3O2
  70. Crystal structure of poly[triaqua-(μ4-benzene-1,3,5-tricarboxylato-κ5O1,O2:O3:O4:O5)-(μ2-5-(3-pyridyl)tetrazolato-κ2N1:N3)dizinc(II)], C15H13N5O9Zn2
  71. Crystal structure of N-(3-methylphenyl)(propan-2-yloxy)carbothioamide, C11H15NOS
  72. Crystal structure of poly[(μ2-1,3-bis(imidazol-1-ylmethyl)benzene-κ2N:N′)(nitrato-κ1O)cadmium(II)] — water (2/1), C28H32CdN10O7
  73. Crystal structure of 4-phenyl-2,4-dihydro-3H-1,2,4-triazole-3-thione, C8H7N3S
  74. Crystal structure of benzyltrichloridobis(1H-pyrazole-κ2N)tin(IV), C13H15Cl3N4Sn
  75. Crystal structure of chlorido-4-fluorobenzyl-bis(2-methylquinolin-8-olato-κ2N,O)tin(IV), C27H22ClFN2O2Sn
  76. Crystal structure of tetrakis(O,O′-diisopropyldithiophosphato-κ2S,S′)-(μ2-1,2-bis(4-pyridylmethylene)hydrazine-κ2N:N′)zinc(II), C36H66N4O8P4S8Zn2
  77. Crystal structure of tetrabutylammonium 4,4-oxydibenzoate – boric acid – water (1/2/6) C46H98B2N2O17
  78. Redetermination of the crystal structure of catena-poly[[tribenzyltin(IV)]-(μ2-pyridine-4-carboxylato-κ2N:O)], C27H25NO2Sn
  79. The synthysis and crystal structure of cyclohexyl 5-amino-1-(2,6-dichloro-4-(trifluoromethyl)phenyl)-4-((trifluoromethyl)sulfinyl)-1H-pyrazole-3-carboxylate, C18H15N3Cl2F6O3S
  80. The crystal structure of 5,7-bis(2-hydroxyethoxy)-2-phenyl-4H-chromen-4-one, C19H18O6
  81. Synthesis and crystal structure of (±)-Ethyl 5′-(difluoromethyl)-2-oxo-4′,5′-dihydrospiro[indoline-3,3′-pyrazole]-4′-carboxylate, C14H13F2N3O3
Heruntergeladen am 1.10.2025 von https://www.degruyterbrill.com/document/doi/10.1515/ncrs-2019-0125/html
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